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Homology
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 383 bits (984), Expect = 4.110e-127 Identity = 259/402 (64.43%), Postives = 289/402 (71.89%), Query Frame = 1 Query: 16 DGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQ-SQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGMPDEEVEGGE 1158
D +T PAP +Q TGPMVAVYLD+ S+EKL +YPG NPGRLRK VI+Y+PS +QR LYE FG SATVKLTGEASSENR+AL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GA+ E+SWKG LPALSAHERDF +EEGS+NKLDEPLTL GSICRADWVEG +G CRTT GGGKREDGWTPQ C +CN+ E+SPCRDIYK FD ++ RINELQPP E+ S S++P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LRREE+++L+ KR +M +ML CSQFHHV ED NADDGLVP M ++ EGGE
Sbjct: 40 DATTAPAPAPSPP----LQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSETSSDGSKSPGTSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAFEGSAGTAVGGGDENALSGRQGGHSRKGEGGEKESEEXXXXXXXXXEERLRREELEVLEEKRTDVMVKMLKCSQFHHVLEDSNADDGLVPDMSGDDEEGGE 437
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 370 bits (949), Expect = 9.590e-122 Identity = 246/416 (59.13%), Postives = 273/416 (65.62%), Query Frame = 1 Query: 1 SAEKPDGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQSQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGM--PDEEVEGGEDATSG 1173
+A K D +T P XXXXXX +Q TGPMVAVYLD+ S+EKL EYPG PGRLRK VI+Y+PS +QR LYE FGGSATVK+TGEA S+NRLAL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GAL E+SWKG LP LSAHERDF +EEGS+NKLDEPLTL GSICRADWVE +G CRTT GGGKREDGWTPQ C +CNT E+SPCRDI+K FD +S RI ELQP E+ S P XXXXXXXXXXXXXXXXXXXXXXXXXX LRREE+++L+ KR+ +M EM CS+FHHV ED ADDGLVPGM DEE E G+ A G
Sbjct: 35 NAVKGDATTAPXXXXXXXXXXPLQRTGPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSETSSDGSKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXKQTEATEVVAGSDRGAGRSGTDIASEGSAGPAVGGGDENALSGRHGGHSPSRKGEVGEKESVAGGSGEPETEEERLRREELEVLEDKRMVVMVEMFRCSKFHHVLEDSYADDGLVPGMLGDDEEGEEGDAAPGG 450
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 171 bits (434), Expect = 9.370e-47 Identity = 92/194 (47.42%), Postives = 120/194 (61.86%), Query Frame = 1 Query: 208 LYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGV------------GGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQS 753
+Y F G A V +TG+ASS R AL ASVS AG VEP SLS +D++P + G GPL S VLIEQ K+AGA EE W+G LP + AH+R F +E G++ +L EP+T+ G+ICRADWV+G S CR T EGG KRE+ W P C +C F SPC+ I++ F SKR +E E+E ++
Sbjct: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEA 194
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 1209 |
Cds size | 1209 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930849.6891124-CDS-C-linearis_contig99:312440..312686 | 1622930849.6891124-CDS-C-linearis_contig99:312440..312686 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 312441..312686 + |
1690881281.4784133-CDS-C-linearis_contig99:312440..312686 | 1690881281.4784133-CDS-C-linearis_contig99:312440..312686 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 312441..312686 + |
1622930849.7101293-CDS-C-linearis_contig99:312968..313154 | 1622930849.7101293-CDS-C-linearis_contig99:312968..313154 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 312969..313154 + |
1690881281.4928527-CDS-C-linearis_contig99:312968..313154 | 1690881281.4928527-CDS-C-linearis_contig99:312968..313154 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 312969..313154 + |
1622930849.7306778-CDS-C-linearis_contig99:313630..313887 | 1622930849.7306778-CDS-C-linearis_contig99:313630..313887 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 313631..313887 + |
1690881281.5015178-CDS-C-linearis_contig99:313630..313887 | 1690881281.5015178-CDS-C-linearis_contig99:313630..313887 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 313631..313887 + |
1622930849.7470436-CDS-C-linearis_contig99:314097..314617 | 1622930849.7470436-CDS-C-linearis_contig99:314097..314617 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 314098..314617 + |
1690881281.5100646-CDS-C-linearis_contig99:314097..314617 | 1690881281.5100646-CDS-C-linearis_contig99:314097..314617 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 314098..314617 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17169.1 >prot_C-linearis_contig99.17169.1 ID=prot_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=403bp
SAEKPDGSTTPAPTPTPAPDAEMQHTGPMVAVYLDNESVEKLHREYPGAN PGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVS SAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQ LPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEG GGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQ SQNPSAESSSGTPSEASSAEDNERGAFKNESRSESNDAAEKSSLGGENAI SSGEGKGSIEGKSKGKGPQESKGEEPETETEDEKLRREEVDMLKFKRVSI MQEMLTCSQFHHVFEDLNADDGLVPGMPDEEVEGGEDATSGTGSGAGEGE SSG back to topmRNA from alignment at C-linearis_contig99:312441..314617+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2177bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous) TCAGCAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACC
AGCACCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACC
TAGACAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAAC
CCCGGGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCA
GCGCAGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGGTAT
GTATCGATGGTAGACTAGTAGGACACGACCGCTCCCTGTTTCCTGCAGCA
TTGAGGTTACACATTTCGGTAAACCTCGTCACTCCAGCATCACTTCTCAT
CTCGTGACTACACGCTCGAAACGATGGTTGAAAGCTCGATGGTGTGTTGC
GTTCAACACACGCCAACACAAACATTCCCACGGCTTGCAGCCATGCACAC
CCATGATTTCTTACCTCTTCCCTCTCTCGCCCTTCTCTCCCGCAATGTGA
TGCTGTGATAATAATTTGCCGTGAAAAGTTAACCGGCGAAGCTTCCAGCG
AAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTGCCGGGGGCTCCGTG
GAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACCCCGGGGGGTGTGGG
TGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCAGATCAAGCGGGCTG
GGGCACTCACGGAGGTGATTGACATTGACATTGACATTGACATGATGCTT
TCTGTGTTGTTGCTTTAGCCGATAGACTAGACTCATCAAGACCAATGTTA
TTGTTGTAGAAATTTTGGTAATCCCATCTTTCCCGTTCTGACTCATCCAT
GTCCCCCGAAACCCCTTGCAAACCAAGCTACGAAGTATACTCTTTACAAG
CTAACCTGTCTTGTCCACTAGGCAACGTCCGATGACACCTTTGTAAAAAT
TTCTTTACTTTCCTTGTGCGAGCCGAAGCTATAGATAAAATTTGTTCGTC
TCTTTTTCGAAATTCCAACCTACATACAATCTAGCAAACACAATCGGCCT
TCAACCAGCATCTATATGTAGAGCACCGTATCAGTTGCTCTTGTTGGTCT
CTATGTATGTACTTTAAAATATGTACTTCGATGTTTGTATGTATGTCGCA
CAACTATAGACACGCTGGCTCTTTTTATTTGACGCACCAGGAATCGTGGA
AAGGTCAGCTTCCCGCCCTTTCGGCCCACGAAAGAGACTTCTCGACCGAG
GAGGGCAGCTTCAACAAACTAGACGAGCCCCTCACTCTCCAGGGCTCAAT
TTGCCGAGCGGATTGGGTGGAAGGCAAGAGCGGCTTTTGCCGAACCACGG
CCGAAGGAGGGGGGAAGCGAGAGGACGGATGGACGCCCCAGGTCTGCCCC
ATGTGCAACACGTTCGAAGCTAGTCCGTGCCGAGATATTTACAAAATGTG
AGTACTTGTTCTCTTGATTGCATTCTCCGTGGCCGAGGTTTGTCCACCTT
CGAGGGTCTATTTTATAGGAGTAAATCTTTTGAACGTCACCAAATGATCT
CTTTCTCTTCCACTGCTGCTGTCGGAAGAGGTCCAATGTTACCTCGCCGG
TATTTTGTCGGTCTGACGTATTTCCTGACTGCCTGATCTCTACCCTCCGC
CCAACAGATTCGATAGAATGTCCAAGAGAATAAACGAGCTCCAACCGCCG
AAAGAGTCTGAGAGTCAGAGTCAGAATCCTTCCGCCGAAAGTTCTTCAGG
AACTCCCTCAGAAGCTTCCTCTGCAGAAGACAACGAACGAGGTGCTTTCA
AGAACGAATCGCGATCTGAGAGCAATGATGCCGCTGAAAAGTCTAGCCTC
GGCGGTGAAAACGCGATTTCGAGCGGAGAAGGGAAAGGCAGCATAGAGGG
TAAGAGTAAGGGCAAAGGTCCCCAGGAGAGCAAAGGCGAAGAGCCGGAGA
CGGAGACGGAAGATGAGAAGCTGCGACGGGAGGAGGTGGACATGCTAAAG
TTCAAGAGGGTTTCGATCATGCAAGAGATGCTCACGTGCTCGCAGTTCCA
CCACGTGTTTGAGGACTTGAATGCTGACGATGGATTGGTGCCGGGCATGC
CTGATGAGGAGGTAGAGGGCGGTGAAGACGCGACCTCTGGGACGGGCAGT
GGGGCCGGGGAGGGCGAAAGTAGCGGC back to topCoding sequence (CDS) from alignment at C-linearis_contig99:312441..314617+ >mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2418bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous) TCAGCAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACC AGCACCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACC TAGACAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAAC CCCGGGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCA GCGCAGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGTCAG CAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACCAGCA CCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACCTAGA CAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAACCCCG GGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCAGCGC AGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGTTAACCGG CGAAGCTTCCAGCGAAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTG CCGGGGGCTCCGTGGAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACC CCGGGGGGTGTGGGTGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCA GATCAAGCGGGCTGGGGCACTCACGGAGTTAACCGGCGAAGCTTCCAGCG AAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTGCCGGGGGCTCCGTG GAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACCCCGGGGGGTGTGGG TGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCAGATCAAGCGGGCTG GGGCACTCACGGAGGAATCGTGGAAAGGTCAGCTTCCCGCCCTTTCGGCC CACGAAAGAGACTTCTCGACCGAGGAGGGCAGCTTCAACAAACTAGACGA GCCCCTCACTCTCCAGGGCTCAATTTGCCGAGCGGATTGGGTGGAAGGCA AGAGCGGCTTTTGCCGAACCACGGCCGAAGGAGGGGGGAAGCGAGAGGAC GGATGGACGCCCCAGGTCTGCCCCATGTGCAACACGTTCGAAGCTAGTCC GTGCCGAGATATTTACAAAATGAATCGTGGAAAGGTCAGCTTCCCGCCCT TTCGGCCCACGAAAGAGACTTCTCGACCGAGGAGGGCAGCTTCAACAAAC TAGACGAGCCCCTCACTCTCCAGGGCTCAATTTGCCGAGCGGATTGGGTG GAAGGCAAGAGCGGCTTTTGCCGAACCACGGCCGAAGGAGGGGGGAAGCG AGAGGACGGATGGACGCCCCAGGTCTGCCCCATGTGCAACACGTTCGAAG CTAGTCCGTGCCGAGATATTTACAAAATATTCGATAGAATGTCCAAGAGA ATAAACGAGCTCCAACCGCCGAAAGAGTCTGAGAGTCAGAGTCAGAATCC TTCCGCCGAAAGTTCTTCAGGAACTCCCTCAGAAGCTTCCTCTGCAGAAG ACAACGAACGAGGTGCTTTCAAGAACGAATCGCGATCTGAGAGCAATGAT GCCGCTGAAAAGTCTAGCCTCGGCGGTGAAAACGCGATTTCGAGCGGAGA AGGGAAAGGCAGCATAGAGGGTAAGAGTAAGGGCAAAGGTCCCCAGGAGA GCAAAGGCGAAGAGCCGGAGACGGAGACGGAAGATGAGAAGCTGCGACGG GAGGAGGTGGACATGCTAAAGTTCAAGAGGGTTTCGATCATGCAAGAGAT GCTCACGTGCTCGCAGTTCCACCACGTGTTTGAGGACTTGAATGCTGACG ATGGATTGGTGCCGGGCATGCCTGATGAGGAGGTAGAGGGCGGTGAAGAC GCGACCTCTGGGACGGGCAGTGGGGCCGGGGAGGGCGAAAGTAGCGGCAT TCGATAGAATGTCCAAGAGAATAAACGAGCTCCAACCGCCGAAAGAGTCT GAGAGTCAGAGTCAGAATCCTTCCGCCGAAAGTTCTTCAGGAACTCCCTC AGAAGCTTCCTCTGCAGAAGACAACGAACGAGGTGCTTTCAAGAACGAAT CGCGATCTGAGAGCAATGATGCCGCTGAAAAGTCTAGCCTCGGCGGTGAA AACGCGATTTCGAGCGGAGAAGGGAAAGGCAGCATAGAGGGTAAGAGTAA GGGCAAAGGTCCCCAGGAGAGCAAAGGCGAAGAGCCGGAGACGGAGACGG AAGATGAGAAGCTGCGACGGGAGGAGGTGGACATGCTAAAGTTCAAGAGG GTTTCGATCATGCAAGAGATGCTCACGTGCTCGCAGTTCCACCACGTGTT TGAGGACTTGAATGCTGACGATGGATTGGTGCCGGGCATGCCTGATGAGG AGGTAGAGGGCGGTGAAGACGCGACCTCTGGGACGGGCAGTGGGGCCGGG GAGGGCGAAAGTAGCGGC back to top
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