mRNA_C-linearis_contig99.17168.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	Neurotransmitter-gated ion-channel transmembrane domain
Ec32 ortholog	Ec-06_000250.1
Exons	6
Model size	600
Cds size	600
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig99.17168.1	prot_C-linearis_contig99.17168.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig99 302401..307195 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930845.4771676-CDS-C-linearis_contig99:302400..302472	1622930845.4771676-CDS-C-linearis_contig99:302400..302472	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 302401..302472 -
1690881279.4058478-CDS-C-linearis_contig99:302400..302472	1690881279.4058478-CDS-C-linearis_contig99:302400..302472	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 302401..302472 -
1622930845.4912267-CDS-C-linearis_contig99:302934..303099	1622930845.4912267-CDS-C-linearis_contig99:302934..303099	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 302935..303099 -
1690881279.420229-CDS-C-linearis_contig99:302934..303099	1690881279.420229-CDS-C-linearis_contig99:302934..303099	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 302935..303099 -
1622930845.5081863-CDS-C-linearis_contig99:304078..304148	1622930845.5081863-CDS-C-linearis_contig99:304078..304148	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 304079..304148 -
1690881279.4304874-CDS-C-linearis_contig99:304078..304148	1690881279.4304874-CDS-C-linearis_contig99:304078..304148	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 304079..304148 -
1622930845.5248106-CDS-C-linearis_contig99:305848..305931	1622930845.5248106-CDS-C-linearis_contig99:305848..305931	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 305849..305931 -
1690881279.4417212-CDS-C-linearis_contig99:305848..305931	1690881279.4417212-CDS-C-linearis_contig99:305848..305931	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 305849..305931 -
1622930845.5399184-CDS-C-linearis_contig99:306620..306707	1622930845.5399184-CDS-C-linearis_contig99:306620..306707	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 306621..306707 -
1690881279.452587-CDS-C-linearis_contig99:306620..306707	1690881279.452587-CDS-C-linearis_contig99:306620..306707	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 306621..306707 -
1622930845.556539-CDS-C-linearis_contig99:307072..307195	1622930845.556539-CDS-C-linearis_contig99:307072..307195	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 307073..307195 -
1690881279.4634955-CDS-C-linearis_contig99:307072..307195	1690881279.4634955-CDS-C-linearis_contig99:307072..307195	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig99 307073..307195 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig99:302401..307195-
coding sequence from alignment at C-linearis_contig99:302401..307195-

protein sequence of mRNA_C-linearis_contig99.17168.1

>prot_C-linearis_contig99.17168.1 ID=prot_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=200bp
TREAPPPPSSRPRISSPGTMPFSLTENIPFLALPVTLITLKITYDVLPPV
AFLALVAVAIGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAK
EEAARKQAAKDRKAAAKKQQEAARKAAVAAKEAAAAKLLAQQEEESKPRS
APQTQSSGKKQPKKKQPKKQPKAAQQVEEEDSDDEDDFLLRMADLERAR*

mRNA from alignment at C-linearis_contig99:302401..307195-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig99.17168.1 ID=mRNA_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4795bp|location=Sequence derived from alignment at C-linearis_contig99:302401..307195- (Chordaria linearis ClinC8C monoicous)
ACGAGAGAAGCTCCACCCCCTCCAAGCTCTCGTCCCCGCATCTCATCTCC
AGGAACGATGCCTTTCTCCCTGACAGAGAACATCCCCTTCCTCGCGCTCC
CCGTGACGCTGATCACCCTCAAGGTGTGTAGACTAGATGGTCCACTCAAA
ACGGGAGCGTTTTTCTTTCGGAAGGATGCGGTTAGGCTAATCTAAGGGAA
GCGCCAACTCCTTTCGCCTCTTGTCGATCACGTTGTATCCGGTTCCCCTC
TCTTGCTTGATCTCGGTCAGACGATGCTAGTCATGGACATTTGATGGAGT
GGGAATGAACGGCGCTCATGCGTTGCACGAGAATTGCACGCATCGCGCAT
AGATGGCGGATGGTTTCTGCCAGCACAGCAGCCATATTTTGTATTTTGTG
TGCGGTTCTGAGAGGTGTCTCTCGCTCTCGGCTTTTCCCCATCGAACCAC
CCTATCCCCGGTCGTGCTCCTCCCGTTTGCGGCTACAGATCACGTATGAT
GTGCTTCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCCATAGGCTG
CTACATGTTCTACGCAGGCAACAAGGTGGGTTTTGTTGTATAATATGTAC
GCCGTTCTAGAACTGCATCTTGGAACCAGAGACGGCACGGCGATTCCCGG
TCGAGCGTCCACACCGCTGAGTTTGTCCGCTCACGCGGTTTTACCGGCAC
ACGGCGGTTGTTTGTATTCGAAGACGCGTTCTCTTTCGCGTTCGCAGCGG
TAGAATTCTGTTGCTGTGCTGAACGCTTTGGCGAGAGCCACACGGGCGCG
TTGCCTAGCTGCTAGCTGGGGCTGCGTGGTTGCCTTTTTCCTTTTTCGCA
AACCTAATCTAAAAGCTTTTTGTGCTCCGGTCCGTCCAGGTCGTCGTTAG
GAAAAATAGATGATATCATATTATAGTTACAAGTCTAGACTGCTAGGTGT
AAACAGCGGCCCGGTAGCTTGCTATGAAGAGCTGCTTTCTGTCAGCTGTG
GCCACTTTTCGGAAGCACCTGTTCCTCTAGTCTAAGTGGCATCTTCCCTT
CTGTATATCAGATATTTTGATCCTGGCATCCGCCTGGCTCTCCGCGCAAG
GGATGTGTATCGGCCACTTCTATGTTTGTGTGATTTCTTTGCTTCTGCTG
GTGCTTTATAAGTGTTCCTCTTGCCTACAGCTGTACTCTTTTTGACATTG
TTGTGGACATGCTGTCAATGTCAAAATCGATGTTGCGCCGTTGTTGTGCC
GTTATCGCGAGCAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAGGCCGAG
GCCACTGCGGACAGTCTTATCCAGGAGCTCACCCGGGAGGAAGACAGGTG
AACACACCCCGGTGGTCTAGTGGATACCCACGCAGTCTACTAAGCGCCAG
GTCATGGGTTCGAGTCCCGACGAAGTGAGTTTTTTTTCTCACTTTCGTTC
CTGGTACATTGAAAACTTGCTGCATAGCTTGTGAGTAAATACTACTTTCG
ACTTCGTTGTTGACGAGGGTAAGGAGTGCTGAACCCTGCTCGCGATAAAA
AACATCAAAGGCATGCACCGCAGGAGGTAGGTGGAGACATCCCCTCTTGT
GTGACCCCGCATGGTAGCCTATCTAGTTGTAGTGAAGAGGAGGAGGCAGG
CTACGAAAAAACATTAATGAGGGAGAAAAAAAAACTGTCATACGAAGTAT
GCATGCAGGAGGACGCAGACAGCTAGACAGAAACGCAGGAGCCGTAATTT
TGGTTTCAGACAAGAGGTCGACCTGAAATACCCTCGTGTTCAAGTGTGCT
CGTGCGGGCGCATCATCGTGGCCGCCTTTCTCCGTGGTTCGCTGGTTGTG
GTGCGACCATGCCGTTGCGCGCGAATGTTGGCATCTGTGCGTGTTTGTCG
CATACAGCTGTCTCTTGTCGACCAAATAACACCAGCATCTAGGTTGGGCT
TGAGTGATGGGTGAGATGCGGCGTACAGGCGAGAAACGCAATTCAATCTG
CACAGAGCTGCTGTCTGTCACTACTGCTGTAGATCGCTCGACGGCTCAAC
CAGGGAGCTCCACACCCTAACGTAATACCTGCATGCGTTTCAGCGCAGCA
CACGCTATTTAACTGTTAGTGTGTGTGTTTGTTTTCTTCCCATTTATTTT
GGCGACAGTCCCTTTCCGATCAAGGCCAGACGTGTACTACACGTTGCGGT
GTATTTAGAGTACTACACTTGTTCGGTGCATTTTTCTGTACAACTAGAAC
CAACCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTT
TTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTAGATT
TTATCGCGAGAAGGGTGCAGCCATCCATTTCCCTCGTCAACGTGCTAAGT
CGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTG
CAAAGTCGCAAAATAAACACCTTTGCTTGGGATTGAACTCCAGACTTTGC
TGCTAGTGGGTTCGAGCTTAAACCACTAGTCCACCGGGGCGTCCGGTAAG
TAGCCCCGCCCTTTCTCTTGAGTTAGCGTCGTTGGAAATCCACCGCTGTC
ATCCTTGCAGCTAAGCAATACAGAAGGGTATTTAGTTATTTACCCATCTG
TTTCTCCTCAGTTAGCCATTCGTACCAGCGGTGAGCTTTGTACGCCGACG
CCGACATCGACCGCGAACGTCAACCCATCTCAACTATTCAGCTACCGCAG
CGTACCTCCACCTCCTTTTTTGTTCGTGGTTTGTTTGGGAGTATTGTATC
GAAGAAAGGTTAAGCTAGCTTTCGTACGTGCATCCCAAACTCTCACAGTC
AAAGTCTCAAACGAGGACGAACGAGCAAACGACTGACGTTGTCGTCGCGG
GCTGCGGTGCGGTGTGCTATTTTGCTCTTGGCGATTCATCGGTGACTGCC
ATTTTCACATTATTATACTCAGTATATGGTAGATATGCCGTAAACAGCAA
GCTTCTCTTTGGCTGCATTACTCTGCGCTGTGACTTCGTGCACCCAGGGC
AAAGGAGGAGGCGGCCAGGAAGCAGGCGGCCAAGGACAGGAAAGCAGCGG
CAAAGAAGCAGCAGGAGGTGAGTTGTGTTGTGTTGGTGTCTTGGATCTTT
CTCATCGCTCGCTTGAGAGGTGCCATGAACCACGCGTCGGTGTGTGTAGG
AGCTTCTTCCGCATCGACTGGTACCTTGGCATTCGGGCGTATCCCGTTCT
GTTGTCAAAGAAGTCTATTCGTGCAACACGACTCTGGCGGCGATAAGGGA
TTCGGAAGGAAGGAAGCAAGGGAGGGATGAATAGGGCACTGAAGTGATGG
ATCGAAACACGAAAAATAGCATCAAGATGTTTGTCTCATCTCCACCCTCA
CGGTCCAGTCACGCCAGCCGGACTGTTGTGTAACGTGAAAGGCGAGAGAC
GGCCTTGACCCACTCGATCGATCTGTTCGATAGTCACAGGCTGTGATTTT
AGGCCATCTGGAGTTGCCTTTCGCACGTCACGTGTTTTTTGTTTTTTTAG
GTAGTCAGAGCGGGTGCGTCCCGACGATCGATGGAATCGACGGTAGTTTT
TGCGTTGACCCTGTTTGCGTCGGAATAACTCTAAGGGGGATGAGCCCTGG
CATTCTGGCATTCGCATACCGGGATCTAAGCACATACCCTGGACCGACTT
TTAAAGCTTGACTAGTCCGTAACGAAGAGGGTTCCAATACCAAACGATAC
GTTTTCGGACAACCATCCTGTCAACGAGATGTTTCCGACGCCGCCCTTTT
TGGCACTGACATGACAGTCTCGTTGTTGTTGTCACGGAGTATAAGAAAGA
GCTTAGAAAGAGCTTTGAAAGTCGGTCCAGGGGGTGTGCTTAGACCCCGA
TTCTTGCGGTACTTACTCAACCTCAGCCAAAAGTGTTGATACGCATTGCT
GTAAATAACGGTACGTGCATAGGTAATGGCAGTCGGTGCATTGTATCAGT
GATCGGAATATTGTCCACGCCTACTTTGTGCAGGTCATGCATAGGACGAT
AGGGTAACATGTTGTTCCACCCCTGTCCCTCTCGCTTTCCGTGCAGGCTG
CCCGCAAGGCTGCAGTTGCCGCCAAGGAAGCCGCTGCCGCCAAGTTGCTG
GCGCAGCAGGAGGAGGAGAGCAAGCCTCGCTCCGCCCCGCAGACACAGTC
TTCCGGCAAGAAGCAGCCCAAGAAGAAGCAGCCCAAGAAGCAGCCCAAGG
CGGCACAACAGGTGAAACACAAAATACTTGGAAGGCTGCACATGGCAATA
TTGATTTTGATGCTGCAGCACGCTATGCCGACCCGAAGGTGGATAACAGA
TGCAGGTAAAAGAAGATAAAGTTCGTGCTTCGAAGTATATATAGACGCAG
TATGTAAGGGTTCACTTGTTACAACTACTGCGCGAATACAAGTCCCTGGT
TGTTGATGGTCTGGCCTAGTCTACGCGGTGCATCTGATGCACGTGATAAC
TGATTGTTTCGTGTGCGTTCCCCTCTCCCGTGCCCCTGCGATGTTTGTGT
GCATGTATGTATGCATGCATCATTGTGCGGTATGTATGTATGCGGTGGTC
CTCCTCCTTCCGCTGCTGCTGCGGGCTGGCTCCGATTGGGCGGGCTGCGG
ATTGCGTGGATCTCATTGGCCGGTCGGAAATATGGATGGATCTACTGGCT
GGTGTTGTGTTGTGTAACTGAAGGTTGAAGAGGAGGACTCGGACGATGAG
GATGACTTCCTGCTGCGCATGGCGGACCTCGAGCGGGCGAGGTGA

Coding sequence (CDS) from alignment at C-linearis_contig99:302401..307195-

>mRNA_C-linearis_contig99.17168.1 ID=mRNA_C-linearis_contig99.17168.1|Name=mRNA_C-linearis_contig99.17168.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at C-linearis_contig99:302401..307195- (Chordaria linearis ClinC8C monoicous)
ACGAGAGAAGCTCCACCCCCTCCAAGCTCTCGTCCCCGCATCTCATCTCC
AGGAACGATGCCTTTCTCCCTGACAGAGAACATCCCCTTCCTCGCGCTCC
CCGTGACGCTGATCACCCTCAAGACGAGAGAAGCTCCACCCCCTCCAAGC
TCTCGTCCCCGCATCTCATCTCCAGGAACGATGCCTTTCTCCCTGACAGA
GAACATCCCCTTCCTCGCGCTCCCCGTGACGCTGATCACCCTCAAGATCA
CGTATGATGTGCTTCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCC
ATAGGCTGCTACATGTTCTACGCAGGCAACAAGATCACGTATGATGTGCT
TCCTCCAGTGGCCTTCTTGGCGCTCGTAGCTGTGGCCATAGGCTGCTACA
TGTTCTACGCAGGCAACAAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAG
GCCGAGGCCACTGCGGACAGTCTTATCCAGGAGCTCACCCGGGAGGAAGA
CAGAGCCCAGCGGCCCAGAGGACGGCTAAGAAGGCCGAGGCCACTGCGGA
CAGTCTTATCCAGGAGCTCACCCGGGAGGAAGACAGGGCAAAGGAGGAGG
CGGCCAGGAAGCAGGCGGCCAAGGACAGGAAAGCAGCGGCAAAGAAGCAG
CAGGAGGGCAAAGGAGGAGGCGGCCAGGAAGCAGGCGGCCAAGGACAGGA
AAGCAGCGGCAAAGAAGCAGCAGGAGGCTGCCCGCAAGGCTGCAGTTGCC
GCCAAGGAAGCCGCTGCCGCCAAGTTGCTGGCGCAGCAGGAGGAGGAGAG
CAAGCCTCGCTCCGCCCCGCAGACACAGTCTTCCGGCAAGAAGCAGCCCA
AGAAGAAGCAGCCCAAGAAGCAGCCCAAGGCGGCACAACAGGCTGCCCGC
AAGGCTGCAGTTGCCGCCAAGGAAGCCGCTGCCGCCAAGTTGCTGGCGCA
GCAGGAGGAGGAGAGCAAGCCTCGCTCCGCCCCGCAGACACAGTCTTCCG
GCAAGAAGCAGCCCAAGAAGAAGCAGCCCAAGAAGCAGCCCAAGGCGGCA
CAACAGGTTGAAGAGGAGGACTCGGACGATGAGGATGACTTCCTGCTGCG
CATGGCGGACCTCGAGCGGGCGAGGTGAGTTGAAGAGGAGGACTCGGACG
ATGAGGATGACTTCCTGCTGCGCATGGCGGACCTCGAGCGGGCGAGGTGA

mRNA_C-linearis_contig99.17168.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

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POSITION

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