mRNA_C-linearis_contig99.17155.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17155.1 vs. uniprot
Match: D7G7W0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W0_ECTSI) HSP 1 Score: 535 bits (1378), Expect = 1.680e-161 Identity = 560/1608 (34.83%), Postives = 682/1608 (42.41%), Query Frame = 1 Query: 1 MDIEEIDGNSSQEDRPPXXXXXXXXXXRPKSXXXXXXXXXXTQSPAIASVASGSSTLIRFLGPAGSPSLSAWEDVNRQCPVCQQTGFSSRSLALHVNKCLDVGSNAGAGVADEAGEAAAVGAKETAKKRVGNAGGRNAATAGAARXXXXXXXXTSNASHAAGAGSLEGEGVARTTPQAVPSKSKSPTSNG--------KAAKKLKTQQDGREAASERQGPGS---------DHATDKARSGTNS-----LQPSFAGSKPAGLAQQXXXXXXXXXXXXXXXTPLRRRGLGLARPPRVHPTGSDTAPTTNAAAAVSRVPNGSDERALNEIARAQLSYVLEASVNMPASAPQAGGWLGTQLFPKPGAEDSLKDGQCADCCCDRTARGQGACLAKCGASARVWAAGRGGKKIAANENSRVRPRPASWGACPSRSSGRRGWLEIWP--GDVDGGNDDDCWGDGDGYVTLRPFPSAAEPKATPXXXXXXXXXXXXXXXXXXXXXXXXXXSSLVVQAGGGPSLSSKGQKQGSSPAPTSRADRFLQVFARLQPARSALNLHESPPPSSKEKPKAKASEARHAEVEGAGARLRSRVAGDGGVNXXXXXXXXXXXXXXXGRQDVVSPGRKDSMTASVAVEFGEGEAKAGAGGTAGSCEVRGVGILATPSPKRDALGTLTLPSAGVSDAVGQRSSANINIVPDRSR-----AASSSSSPH-----------------CNSLGTSSTSVKSNSSVNKVRRK-ESRKPPSPTPTPAMPPTYTPQVGEPRGTGCLANSPLANTKGSVKQKSLLEAAPSVPPTSTSTPHLSG-------------------------------------------AMSVENVAIGMTKRPKPASVARTELNTAARGGGEPLPRDGSSRTSGRMIGRLTGASVTAKRSSAARDSDKREETLXXXXXXXXXXXXXXXXXXXXXXXPDAKHAAPVSSRWGAPRSRGALACRASSGLLRSADHAASPSXXXXXXXXXXXXXXXXXXXXASDRFVESSVSDXXXXXXXXXXXXXXXPFQGRKADVPQKGSLTVVCDHGATLRSSWSIDDSQEVGRLLFGASLGYDAVWYLDPADEDCVGVRRYRILPHPLLAPTGGWISERGRLRDDPYTIIKAIPSPTTKSXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXPAQAPLGRRHPAA-PYQRQQQQHRRQQHGNLGNEGLPKST---PTQGSNPSTNTSXNAGRRRGRG-------SSWYPSGESHDERASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVFALPGAAPAKGRGSLHVGGATSPPAKALEASDTGDKVTCPVCNRGMDHCKPGQRQQHVHTCLLKQSSSTKKAPXXXKTPATAPVTPTPQTPGSAVGVGAGGSGYGNMARSSVEETGPFAFGQGRKGREAPGP---------SSAS--DADAGAADSPRSTRVSLQGVFSPKPARRSPKTGDIPIQLEHRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRKSGVGTKTNGFRGSTGTAEVRVPASKSTVAPKAKGPAECPVCQLHFGGRLGDWERQQHIKQCLES 4488
MD EEID NSSQE P R K+ SPA+A SSTL RFLGPAG PS SAW+DVNRQCPVCQQTGFSSRSLALHVN CL+ + A D + +A G ++ A VGN GRN ATA +S + G+GS EG R + + P KSK+ G KAAKK KT Q R +ER + + A DK +S T + L S S P G Q PLRRR LGLARP + H SD PT AA+ SR G D RAL+EIA+AQL Y+ EAS PA GGWLGT+LFP P E D DC C T G+GA + CG V G G EN RVR RPASWGA P+ + GW WP G VD G D CWGDGDGY+TL+ FP P T + + V A L +G SPAP+SR DRFLQVF+RLQPAR AL LHE PP+ P+ +A+V+ G R N G Q PG +M SV E G G + GTA SCE V L P PKR AL T++ SA + +R A I P +S A+ S S H N G + N+ + SRK P PT T+ Q G ++P N+ VK + + P+ ++ A++ EN+ IG R + A V R ++ G +P PR GSS S + + GA+V KR+S++ + + R ++ P + A P SS+W RSRGALA RASSGLLRSAD AA A+D V+ + S+ +GRKADV QKGSLTVV +HGATLR SWSID S E+GRL FGA L YDAVWYL PAD DCVGV RY ++PHP LAPTGGWIS GRLRDDPY I+KA +P+ + + G+R P P+ Q G +G EGL KST G + + +AGR RG + P+ ESH +R S S+V LP A A G L ATSP AKALEA+D+GDKVTCPVCNRGMDH K GQRQQHVH CL+KQ SS KK T TP+ P G RSS++ G G+ R P SSA+ + +G ++ PRS+RVSLQGVFSPKPA RD TN S GTA KG ECPVC + FGGR G WERQ H++QCL+S
Sbjct: 2 MDAEEIDDNSSQEANLPPATLTLATKKRTKTKK---------DSPAVAP----SSTLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSSRSLALHVNDCLERRARA-----DASDSESAAGGRKDAAGGVGNPDGRNTATA-----TTVGNEASSAVTDVTGSGSREGN-TRRMSREGTP-KSKAVHGRGGEKQVRQDKAAKKTKTLQGERAIDTERAASATSKARVSHTRNQAADKTKSNTRAALQHRLPNSTQSSSPDGSQQP---------------NPLRRRALGLARP-KGHQIVSDAMPTPAAASNASRARKGCDSRALDEIAQAQLLYLREASARGPA---HGGGWLGTKLFPAPDEEGESADDGSMDCWCVGTGGGEGAYRSSCG----VGECGTGRNTRMRKENRRVRGRPASWGARPNDE--QWGWFGTWPAGGSVDDGGVD-CWGDGDGYLTLKAFP----PPET-------------LVESDGEDERDGGGAVMPVDAARSMRLGEEG-----SPAPSSRVDRFLQVFSRLQPARRALRLHE--PPTPXXXPQDSGDNRANAKVKNVGTRSPPTAVAPTNKNTVASSS---------GPQQAERPGGSPTMRPSVEREPG-GAGNSARTGTARSCEGERVRELTMPPPKRTALETISEVSANNN----RRPGATIASSPVQSTSPAIIASFKSVSGHKISRKQPPQEPPQQRKPANRSGEEGSRRHEQEDRNRTSSEGSSRKLSLPAPTVRRTSTFEVQACS-GGVENSVSAPKGNSPRVVKTPAKIYGPPNESAADAASQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRPVAVANENLTIGE-HRKRTAHVDRAPVDATTHGVPQPPPRHGSSTGSDEVKRSMPGATVAKKRASSSHERNVRVSSMDAGGHRRSQRDPP----------PGLQRAIPTSSQWNGSRSRGALASRASSGLLRSADLAARSENQRKENENAKVAPA------ANDGVVDLAGSNSSQLEEC----------EGRKADVRQKGSLTVVWEHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADTDCVGVLRYSVVPHPRLAPTGGWISGSGRLRDDPYIIVKAEAAPSIRPSKAASRDRGD----------------------GRGGSGQRQPNLDPHHHQ---------GRVGVEGLTKSTHGAADGGYTAAAPSRGHAGRSRGTNXXXXXXAERYEPAEESHSDRVSAGPTAEGGRRTQPQTP-----------------------SRV--LPKAVSAGGSFGL----ATSPSAKALEANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKK------TRLAGDATPSASRPS------------GITHRSSLQFDGSSDPGESTTPRPERRPGVRRTEGTGSSANRQEGPSGPSEGPRSSRVSLQGVFSPKPA----------------RDPDG--------------------------------------------TNTVSASRGTAPXXXXXXXXXXX-XXKGLTECPVCGVSFGGRQGQWERQAHVQQCLDS 1353
BLAST of mRNA_C-linearis_contig99.17155.1 vs. uniprot
Match: A0A7S4J0S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J0S2_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 9.020e-6 Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 1 Query: 2896 PQKGSLTVVCDHGATLRSSWSIDDSQ-EVGRLLFGASLGYDAVWYLDPA---------DEDCVGVRRYRILPHPLLAPT---------GGWISERGRLRDDPYTIIK 3159
P G++ +V + GAT+R + ID+++ +G+L G Y +L P D++C+GV RY+I+ P+ T GWIS+RGRL+ +PY I+K
Sbjct: 374 PVLGTVRIVSEKGATIREIFDIDEAKLSLGKLKHGDVRQYVEKRFLPPPEDEDEFDNDDDECIGVYRYKIILKPVDKETVDSELDHFNHGWISDRGRLKCEPYKILK 480 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17155.1 >prot_C-linearis_contig99.17155.1 ID=prot_C-linearis_contig99.17155.1|Name=mRNA_C-linearis_contig99.17155.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1506bp MDIEEIDGNSSQEDRPPPTTTTATTKKRPKSKSKSKSKSKETQSPAIASVback to top mRNA from alignment at C-linearis_contig99:226406..234019+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17155.1 ID=mRNA_C-linearis_contig99.17155.1|Name=mRNA_C-linearis_contig99.17155.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7614bp|location=Sequence derived from alignment at C-linearis_contig99:226406..234019+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:226406..234019+ >mRNA_C-linearis_contig99.17155.1 ID=mRNA_C-linearis_contig99.17155.1|Name=mRNA_C-linearis_contig99.17155.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9036bp|location=Sequence derived from alignment at C-linearis_contig99:226406..234019+ (Chordaria linearis ClinC8C monoicous)back to top |