Homology
BLAST of mRNA_C-linearis_contig99.17147.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.950e-17 Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 3 Query: 366 LSFLISRVQQSRKRSRDDEGNGLLGFLQDSALIEVVDESDLEEDVAPLK 512
L FLISRVQQSRKR RDDEGNG+LGFLQDSALIEVVD+SDLEEDVAPLK
Sbjct: 34 LPFLISRVQQSRKRGRDDEGNGILGFLQDSALIEVVDDSDLEEDVAPLK 82
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 699 |
| Cds size | 402 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930845.9237528-UTR-C-linearis_contig99:119539..119835 | 1622930845.9237528-UTR-C-linearis_contig99:119539..119835 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 119540..119835 + |
| 1690881279.5956264-UTR-C-linearis_contig99:119539..119835 | 1690881279.5956264-UTR-C-linearis_contig99:119539..119835 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig99 119540..119835 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930845.9402087-CDS-C-linearis_contig99:119835..120237 | 1622930845.9402087-CDS-C-linearis_contig99:119835..120237 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 119836..120237 + |
| 1690881279.6088233-CDS-C-linearis_contig99:119835..120237 | 1690881279.6088233-CDS-C-linearis_contig99:119835..120237 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig99 119836..120237 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17147.1 >prot_C-linearis_contig99.17147.1 ID=prot_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MWRNTNVIPTSRLFHALLSTAFCLSFLISRVQQSRKRSRDDEGNGLLGFL
QDSALIEVVDESDLEEDVAPLKVSKLKGMISPTGDVFGIGCFARWLFQDI
VWRIHALTSNISASCIVLNNKDHRFPSFVFRRAA back to topmRNA from alignment at C-linearis_contig99:119540..120237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=698bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)
GTATGTACTTATATGTGTTGCCTTACATGGTCGATGAATGTCGTACACGC
CACCGAGGCCGTGTGGCACCCACCTGCTTGTGTGCGTTTCCCTTTGTGCC
ATGTTTCAGATTCAGGTTTTCTATACCAAGTGCATTCGTTAAATTTGTTC
CTCCTGGGATTTCGAATTTAGGAGATGGTTGTGTCGTGTACCATGCTCCC
AATTTCTGTGTTTTGCGGGGAAGATGGCAGACACAAATACACCACGTTCT
ACGCTCGCTGAAAAGAGGGAGTAAATAGAGACAACCAACCGTAAAGATGT
GGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCCCTGCTG
TCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCAGTCCAG
AAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCCTCCAGG
ACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAAGACGTG
GCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCACTGGCGA
CGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATATTGTGT
GGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATCGTTTTG
AATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGCCGCA back to topCoding sequence (CDS) from alignment at C-linearis_contig99:119540..120237+ >mRNA_C-linearis_contig99.17147.1 ID=mRNA_C-linearis_contig99.17147.1|Name=mRNA_C-linearis_contig99.17147.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig99:119540..120237+ (Chordaria linearis ClinC8C monoicous)
ATGTGGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCCCT
GCTGTCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCAGT
CCAGAAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCCTC
CAGGACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAAGA
CGTGGCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCACTG
GCGACGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATATT
GTGTGGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATCGT
TTTGAATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGCCG
CAATGTGGAGAAACACGAACGTGATACCCACAAGCCGCCTCTTTCACGCC
CTGCTGTCGACGGCGTTTTGCCTTTCTTTCTTGATTTCACGCGTGCAGCA
GTCCAGAAAACGTAGTCGCGACGACGAGGGCAACGGGTTACTGGGCTTCC
TCCAGGACTCAGCGCTTATCGAGGTGGTGGATGAGTCCGACCTTGAAGAA
GACGTGGCACCCTTGAAAGTGAGTAAATTGAAAGGGATGATCTCCCCCAC
TGGCGACGTCTTTGGTATTGGTTGTTTCGCTCGATGGCTCTTCCAAGATA
TTGTGTGGCGAATTCATGCATTGACCAGCAATATATCAGCATCGTGCATC
GTTTTGAATAACAAAGACCACCGCTTCCCCTCCTTCGTTTTCCGACGTGC
CGCA back to top
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