mRNA_C-linearis_contig98.17135.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig98.17135.1
Unique Name	mRNA_C-linearis_contig98.17135.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Match: D8LJU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.920e-13
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1

Query:  118 MTERLRLLHEKRAILSSELREFSARSGASSSERLIAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF 369
            MT+RL+LLHE++  LSSELR  SA+  +SS+ RL+AADNA+A M T+G+ GV AG A ARF AARR      RR    D+ + F
Sbjct:    1 MTQRLKLLHEEKTALSSELRTLSAKGSSSSTVRLVAADNAMAAMVTSGIIGVFAGGALARFLAARRGRSRLSRRQQDKDKDRHF 84

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot

BLAST of mRNA_C-linearis_contig98.17135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LJU1_ECTSI	6.920e-13	53.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig98	contig	C-linearis_contig98:481359..484302 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-23_000120.1
Exons	3
Model size	1480
Cds size	333
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig98.17135.1	prot_C-linearis_contig98.17135.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig98 481428..483224 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930843.0502274-UTR-C-linearis_contig98:481358..481427	1622930843.0502274-UTR-C-linearis_contig98:481358..481427	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig98 481359..481427 +
1690881278.1147726-UTR-C-linearis_contig98:481358..481427	1690881278.1147726-UTR-C-linearis_contig98:481358..481427	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig98 481359..481427 +
1622930843.1196153-UTR-C-linearis_contig98:483224..484302	1622930843.1196153-UTR-C-linearis_contig98:483224..484302	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig98 483225..484302 +
1690881278.1696036-UTR-C-linearis_contig98:483224..484302	1690881278.1696036-UTR-C-linearis_contig98:483224..484302	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig98 483225..484302 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930843.0687342-CDS-C-linearis_contig98:481427..481461	1622930843.0687342-CDS-C-linearis_contig98:481427..481461	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 481428..481461 +
1690881278.130782-CDS-C-linearis_contig98:481427..481461	1690881278.130782-CDS-C-linearis_contig98:481427..481461	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 481428..481461 +
1622930843.0833673-CDS-C-linearis_contig98:482171..482283	1622930843.0833673-CDS-C-linearis_contig98:482171..482283	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 482172..482283 +
1690881278.1430628-CDS-C-linearis_contig98:482171..482283	1690881278.1430628-CDS-C-linearis_contig98:482171..482283	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 482172..482283 +
1622930843.1031432-CDS-C-linearis_contig98:483037..483224	1622930843.1031432-CDS-C-linearis_contig98:483037..483224	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 483038..483224 +
1690881278.1543627-CDS-C-linearis_contig98:483037..483224	1690881278.1543627-CDS-C-linearis_contig98:483037..483224	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig98 483038..483224 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig98:481359..484302+
coding sequence from alignment at C-linearis_contig98:481359..484302+

protein sequence of mRNA_C-linearis_contig98.17135.1

>prot_C-linearis_contig98.17135.1 ID=prot_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MELEQRDAEAEALCHGMTERLRLLHEKRAILSSELREFSARSGASSSERL
IAADNAVAVMATAGLTGVLAGVAAARFFAARRTNRSRPRRGGGVDETKRF
DWPPPKAPSS*

mRNA from alignment at C-linearis_contig98:481359..484302+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig98.17135.1 ID=mRNA_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2944bp|location=Sequence derived from alignment at C-linearis_contig98:481359..484302+ (Chordaria linearis ClinC8C monoicous)
GGTTCGTTCCTACTCGCACCTTCCCGTTCCGCGACCAACAATTTTTTGAC
GTCAGGTGAGGTTGGCACCATGGAACTGGAGCAGCGAGATGCAGAGGCCG
AAGGTGTGTGGGGGGTGTGTTTTCTCTCTCGGTGAGAGATTGAAAAAACA
AAAGAGCGGTGTTATATTTTTTCGAGAACGCGGTCCATTGCTCTGCGTAG
ATAGGTCTCCGTCCTCTCGCCTACCGGGCGATCCAAGGTTGTCGTGTGGA
CCTTAATCTTTACCGGGGATAGCGAGGATGCTGTGAGTGTTTCTTAGAAG
CTTTGCTTGTTCAGCGCACCCCACCCTACCCGGCCCTGCTCTAAACCGAT
TTCTACTGATCTGTTGCTGTAAGATGAGCTGGCTCTATTGTATAAAGGGA
GATTTGAGATTTGAGATTTGAAAGTGTTGAATTGTTCACACTGTGCGCAC
ACATCCACCACTGCATATTTTCCCTGGTTCTGACGGCTGTTCCCTTCTCC
TTCCATCTCCACACCCCTCCGACGTTTTCCGACAGTAGTTGAGCGCCTTA
GACCAAACACGATGCAGGTCGTATTTTAGGCATTCAAATCATGTTTCAGG
GGCGCTCGTTGTCACGTCCTCACACACGGATTCTCCGAGCGCCATCATCG
CTGACCCTGTGAAGAGAAGACTTGCCTGCTGGAAAAAATAGCTTTATCCT
TGTCAACCATTCGAACACTCACGATGTACTACTGTGGATAACGGGCCGTT
CGTTGTTCCGCGTTCGCTCTTCGTGTCTAACGCTAACCCACATTTCTCAC
CGTTCGCCGTCAGCTTTGTGTCATGGCATGACTGAGCGTCTAAGGCTGCT
CCATGAGAAGAGGGCCATCCTCTCGTCCGAGCTCAGGGAGTTTTCCGCGA
GGAGTGGGGCGTCATCCTCAGAGAGGTGAGTTTTGTCGTCGTAGAAATTG
GTTCGCTGCTGCAAAGCAACAGAACACCCAAATAAATCTGTTCGGTGGAC
TTGTTTAGTCGTGACGCACTGGGGGGCCTTGACTATGGTGGGTGCTGCTG
CCTGTGCCTCATCGTCGGCACGAGGGCACCCTTTGCAGTTGTGTCGAGAT
GATAGACCACGCGAAATGATGTCTATCATTTGCCGTTAGGTTCAAGAGAC
GATGGTACCTGCGATACGATCGCCCCTCGCCGACATCGCATAGAAGATAT
GAGCAGATGCACGGCCGATGCGCTTCTCACAGACTCGTATCTTGACGCGA
TAGCTAAAGTTCACCTACGCTGCACTTCTGATTGTGCTCACAATAGAGTA
TGCGGAAGAGATACAGGAAAGTGTCGGCAGTAGAGGCGCTTTAGCAGCTG
GACACAGAGTATATCCAGCGGCTGCGCCATAGAGAGGTTGTTTAAAGAAG
TGTGACTTTCCAGCAAATACATGAGTACCTAAGCCGCGAGGCAAGCCGGT
GGCATCGCGGGCGGGGGGGGGTACTTGCTTGCCCGGGGCATCCCATCGAG
GCGGAACATGGTTTCCACCCCTGCATGGTGCTACAAACACCACAACGTTC
GGGAGCGCTTGACGCCTTTTGGTTGACCTTTTTCGTTGCAAAAATCTATT
GTTGCCGTGTATAGATACATAGCCTTGCGCCCCTCGGAAAAATTCAACTG
GCGCGGCGTCCGCCGACTCGGGGGCACAGGTTAATCGCTGCAGACAACGC
CGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTGCTGGCAGGAGTGG
CCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCGATCAAGACCAAGA
CGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACTGGCCACCACCCAA
AGCCCCGTCTTCCTGACAGCCCCGGTCCCGACTCGGAAGCATATTCTTCA
CGTACACACGTATATACCACCAGCTTCTGACAAGAAACGGGCGTTAGGCA
GAGGCTCAATTTCTCATGAAGACGCCATGACGCCGGGAGACCTCGACAGT
ATGGTACACGACAGGGTCGAGTACTTCGTCGCGGTCAATGAGGCTGGCTT
GGCGCTTGCCTGTCTCTCACTGTAGATATTTCACAGCGATCTCGGCCGAT
GGCAAAAAAAGCGTTGGTGGGCGTGTACACTATAGTGAATTCGGAAGAAG
AGGCGTTTCGGGTTTTTCGAGCTTTTCGATCGACACTCAGGATTTGACTG
CGCTTACGTTCTACTTCTCTCTGCTACCTGTTGTTTTGCCAGATGATCAG
TTGGAGTTGGCAGGTTTCCTTGAGAAGTTCAAAGCGTGCCGGGAAACCAT
GCTATCCCGTTTGTACTGCCACGAAAAATGGTAAGGATGTGACCCTTGGG
AATTACGCATGTACAGCAGTAGTCTACATGGACTTTTCGCTTGATGCAGT
CCAATAGAAGAAAATACGCTCATGCGGCTGCGGCCGCAGTGCGTCGAAAA
TTGCGGTTTTGTTACCCTTGCCTCATGGAAAATGGCAGGGACGTTAAGAC
TAGAGCAGATGCTGTTTGGATAGTAGGCTAGGGGGCGGCGGAAAAACTCA
ATCGGAGCGGTTTCAGTGGACCTCAAGTTCCAAAGCTGTTGGTTCAACAG
GCGTTGAGTAGACACTACAATTGCTGCAAGTACCCTCGGATTCCCCGATT
TCCCCGGGTTCATGGCAGGAGTGTCTCGTCATGGGGTTCTATGCGTAAAG
CACAAGCGAAAAGAGGATGCACCCATCACTGTCACTAATCCGAAGAAGCG
CATGCACGAAGCCAGCAGACCAACGGATGTGAGTCTGAAGCCTTGCCCGC
TCGCCGCTTTGTTCGCCGGAGGAAAAACATTGCCGGCGTCGCCCTCGCTC
ATCCTTCATCGCTGCCGTCGCCGCCACCCAGCTCGCCATTAATTTCGTCT
CTTGGGCGCTCTTCCGCACCTACTACCACCCCGCCGCCCCACCC

Coding sequence (CDS) from alignment at C-linearis_contig98:481359..484302+

>mRNA_C-linearis_contig98.17135.1 ID=mRNA_C-linearis_contig98.17135.1|Name=mRNA_C-linearis_contig98.17135.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig98:481359..484302+ (Chordaria linearis ClinC8C monoicous)
ATGGAACTGGAGCAGCGAGATGCAGAGGCCGAAGATGGAACTGGAGCAGC
GAGATGCAGAGGCCGAAGCTTTGTGTCATGGCATGACTGAGCGTCTAAGG
CTGCTCCATGAGAAGAGGGCCATCCTCTCGTCCGAGCTCAGGGAGTTTTC
CGCGAGGAGTGGGGCGTCATCCTCAGAGAGCTTTGTGTCATGGCATGACT
GAGCGTCTAAGGCTGCTCCATGAGAAGAGGGCCATCCTCTCGTCCGAGCT
CAGGGAGTTTTCCGCGAGGAGTGGGGCGTCATCCTCAGAGAGGTTAATCG
CTGCAGACAACGCCGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTG
CTGGCAGGAGTGGCCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCG
ATCAAGACCAAGACGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACT
GGCCACCACCCAAAGCCCCGTCTTCCTGAGTTAATCGCTGCAGACAACGC
CGTTGCCGTGATGGCGACTGCCGGGCTGACGGGTGTGCTGGCAGGAGTGG
CCGCTGCGAGATTCTTCGCCGCGAGAAGAACGAACCGATCAAGACCAAGA
CGAGGGGGAGGCGTGGACGAGACGAAGAGATTTGACTGGCCACCACCCAA
AGCCCCGTCTTCCTGA