mRNA_C-linearis_contig97.17102.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: D8LL05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL05_ECTSI) HSP 1 Score: 280 bits (715), Expect = 5.280e-90 Identity = 150/162 (92.59%), Postives = 156/162 (96.30%), Query Frame = 2 Query: 95 MAAGQHQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKRAEFKGGEEAKA 580
MA GQ QQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQAR+SESISAVEALGSK EDKEILVPLTQSLYVPGRIVEADKM+VDVGTGYYVQKDQQKTAEFLGRKK+MVTTNLESLR+A+D KRKNLEAIVMVMRRKIG+IETKRAEFK EEAKA
Sbjct: 1 MAGGQQQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARFSESISAVEALGSKTEDKEILVPLTQSLYVPGRIVEADKMMVDVGTGYYVQKDQQKTAEFLGRKKDMVTTNLESLRNAIDVKRKNLEAIVMVMRRKIGDIETKRAEFKSSEEAKA 162
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A835ZFR4_9STRA (Prefoldin subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR4_9STRA) HSP 1 Score: 176 bits (447), Expect = 6.680e-50 Identity = 91/154 (59.09%), Postives = 118/154 (76.62%), Query Frame = 2 Query: 95 MAAGQHQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKRAEF 556
MA+ Q+ +DLS LSLEQLNQ+KTQH+EEVQTL+ N+ LRD ARY E+ SAVEA+G K E +EILVPLTQSLYVPG+++E DK LVD+GTGYY +K Q++T EFL RK MV NL SLR ++ KRK E + MVMR+++ +IE R+++
Sbjct: 1 MASVVGQREVDLSSLSLEQLNQLKTQHQEEVQTLTANYAALRDGLARYQEAKSAVEAMGRKAEGREILVPLTQSLYVPGKVIEGDKFLVDIGTGYYAEKSQRETEEFLTRKAGMVEANLASLREVIEMKRKAFETLTMVMRQRLSQIEENRSKY 154
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A2P6NP58_9EUKA (Prefoldin subunit 5 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NP58_9EUKA) HSP 1 Score: 132 bits (331), Expect = 4.370e-33 Identity = 67/142 (47.18%), Postives = 105/142 (73.94%), Query Frame = 2 Query: 113 QQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIE 538
QQ ID+S LSLEQLN K Q EEEVQ LS ++ +L+ A AR+++S A+ A+ ++ E K +LVPLT SL+VPG++ +++L+D+GTGYYV K ++ ++F RK +M+ N + + AV KRKNLE++++VM++KIG+++
Sbjct: 6 QQGIDISQLSLEQLNTFKQQFEEEVQVLSNSWQQLKLASARFTDSKDALSAIKTENEGKAMLVPLTTSLFVPGQLTNTEQVLIDIGTGYYVTKPVKQASDFFDRKIKMINDNADQVAQAVSVKRKNLESVLLVMQQKIGQMQ 147
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A7S3NIR8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIR8_9STRA) HSP 1 Score: 131 bits (330), Expect = 7.050e-33 Identity = 72/149 (48.32%), Postives = 107/149 (71.81%), Query Frame = 2 Query: 113 QQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEA--LGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKRAE 553
QQ ID+S LSLEQLN MK +HEE VQ LS ++ A+ R+ ES + ++ L + E KE+LVPLTQSLYV G +++AD++LVD+GTGY++QK Q E + RK ++VT N++S+ + V+ K++NL AIV VM+ K+ +I+ ++AE
Sbjct: 5 QQQIDISKLSLEQLNSMKQEHEESVQELSSQLETMKLAEGRFRESRNTLDIIKLDDQAEGKEMLVPLTQSLYVSGNVLDADQVLVDIGTGYFLQKSVQGAQEMIDRKLKVVTQNMDSIHTVVNQKQENLNAIVTVMQYKMQQIQKQKAE 153
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A7S2C3Z7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Z7_9STRA) HSP 1 Score: 129 bits (323), Expect = 7.370e-32 Identity = 65/148 (43.92%), Postives = 104/148 (70.27%), Query Frame = 2 Query: 122 IDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKRAEFKGG 565
IDLS + + QLN +KT HE+E+ L+GN+ L+ AQ++ + ++ + +GS+ E +EILVPLT SLYVPG I + +K+L+DVGTGY+V+K K +F+ RK +MVT N + +++ K+KNLE IVM+MR+++ ++ + + K G
Sbjct: 12 IDLSQMDINQLNDLKTSHEQEIDQLTGNWRTLKHAQSKLNTAVVCLNEVGSQ-EGREILVPLTPSLYVPGTICDTNKVLLDVGTGYFVEKSLAKAKDFVDRKNKMVTVNADQIQNVTQQKQKNLETIVMIMRQRMAMMQQAQEDAKAG 158
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: M4B879_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B879_HYAAE) HSP 1 Score: 126 bits (317), Expect = 4.360e-31 Identity = 65/142 (45.77%), Postives = 105/142 (73.94%), Query Frame = 2 Query: 122 IDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKR 547
++L LSLEQL+ +KTQ E+E+Q L+ +F LR+AQ+R+SES +A++++ + +K++LVPLT SL++PG+I D +LVDVGTGY+V++ K +F+ RK E + +N E L++ VD KR LEA++M+M++K+ E + R
Sbjct: 8 VNLVDLSLEQLSSLKTQLEKELQQLTVSFRGLREAQSRFSESKAALQSMAAVDLNKDVLVPLTASLFIPGKIASKDDVLVDVGTGYFVEQSISKAEQFMDRKVEFLQSNTEQLKTVVDGKRNTLEAVLMIMQQKVQEAQPTR 149
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: F0YDJ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ5_AURAN) HSP 1 Score: 125 bits (315), Expect = 8.680e-31 Identity = 64/145 (44.14%), Postives = 100/145 (68.97%), Query Frame = 2 Query: 122 IDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKIGEIETKRAEF 556
+D+S LSL+QLNQ+K+QHE+E+ L L+ A+ R+ +S A+ A+ E K +LVPLTQSLYVPG++ + D +LV++GTGYY++K + + RK ++V N E++ + V K +N EAIVM+M+ K+ +I+ K+AEF
Sbjct: 1 MDISTLSLDQLNQLKSQHEQELNQLRERHSSLKQAEGRFRQSKDALAAISKDDEGKSMLVPLTQSLYVPGKLCDVDSLLVELGTGYYLEKKKDDADAMIDRKIKLVADNAENITTVVAQKTRNHEAIVMMMQHKMAQIQEKKAEF 145
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A7S2SQJ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQJ9_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.360e-29 Identity = 63/135 (46.67%), Postives = 97/135 (71.85%), Query Frame = 2 Query: 122 IDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKI 526
IDLS + ++QL Q+K QHE+E+ L+ N+ +L++AQ + S A++ + S+ E +ILVPLT+SLYVPG IVEAD++LV++GTGYY +K+ + +GRK M++ N ++++ V KR NLE IVMVMR ++
Sbjct: 16 IDLSQMPMDQLMQLKEQHEQEISELTTNWRQLKEAQIKLEASTEALKTVSSR-EGTDILVPLTESLYVPGNIVEADRVLVELGTGYYAEKNVPDAQDLIGRKVAMISANADNMQETVTQKRNNLETIVMVMRSRL 149
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: H3G733_PHYRM (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3G733_PHYRM) HSP 1 Score: 121 bits (304), Expect = 2.220e-29 Identity = 63/137 (45.99%), Postives = 100/137 (72.99%), Query Frame = 2 Query: 113 QQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGSKVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRK 523
Q ++L LSLEQLN +K Q E+E+Q L+ +F LR+AQ+R++ES A++A+ + DKE+LVPLT S++VPG++ ++LVDVGTGY+V++ K +F+ RK E + +N E L++ +D KR LEA++M+M++K
Sbjct: 4 QNEVNLVDLSLEQLNSLKGQLEKELQQLTTSFGGLREAQSRFTESKEALKAMAAADLDKEVLVPLTASMFVPGKLSNKTEVLVDVGTGYFVEQSVDKAEQFMDRKVEFLQSNTEQLKTVIDGKRNMLEAVLMIMQQK 140
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Match: A0A068S4K0_9FUNG (Prefoldin-domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S4K0_9FUNG) HSP 1 Score: 121 bits (304), Expect = 3.340e-29 Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 2 Query: 107 QHQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSESISAVEALGS-KVEDKEILVPLTQSLYVPGRIVEADKMLVDVGTGYYVQKDQQKTAEFLGRKKEMVTTNLESLRSAVDAKRKNLEAIVMVMRRKI 526
Q QQ+++++ L L L Q+KTQ EEE+ L+ ++ KLR AQAR+S+ +VE+L S K +DK ILVPLT SLYVPG++ + +K++VDVGTGYYV+K F K+E V NLE L+ ++ K+ +L AIV VM+ K+
Sbjct: 4 QQQQTVNITDLDLPSLQQVKTQLEEELSHLTQSYGKLRGAQARFSDCADSVESLKSEKADDKTILVPLTSSLYVPGKLSDVEKVIVDVGTGYYVEKSLDGATSFYKTKEEYVKQNLEKLQETINGKQSSLRAIVNVMQDKV 144 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17102.1 >prot_C-linearis_contig97.17102.1 ID=prot_C-linearis_contig97.17102.1|Name=mRNA_C-linearis_contig97.17102.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=163bp MAAGQHQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARYSEback to top mRNA from alignment at C-linearis_contig97:395762..398677- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17102.1 ID=mRNA_C-linearis_contig97.17102.1|Name=mRNA_C-linearis_contig97.17102.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2916bp|location=Sequence derived from alignment at C-linearis_contig97:395762..398677- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:395762..398677- >mRNA_C-linearis_contig97.17102.1 ID=mRNA_C-linearis_contig97.17102.1|Name=mRNA_C-linearis_contig97.17102.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at C-linearis_contig97:395762..398677- (Chordaria linearis ClinC8C monoicous)back to top |