mRNA_C-linearis_contig97.17074.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI) HSP 1 Score: 332 bits (851), Expect = 1.570e-107 Identity = 218/360 (60.56%), Postives = 231/360 (64.17%), Query Frame = 1 Query: 370 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASPENRLEAYRCALCGGSSGVTVDGGPLVWRVDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETQEGEEGESEDDDF-------LKLSGCSQGSRAGGRIAQTRRVPASGGRSGRECRPSPSPAGGQDSVVLVDTTSDRHDSENNSEVRDGE--TQPSPPRLPLAERLRLRRLGSC 1422
RKKFFHCYLLQSQDPKHKRSTYIGFTVDP RRIRQHNG I GGA+RTKRKRPWDMVAIVHGFPSKSSALQFE AWQHPQRDRRIKVKV DLPVDSRRTVGVP KLRLCKAMLCLDPWARYGLGIRFLREEYA Y+KL+LP V GDPDTELSTG Q+GLPVY PP S E RLEA XXXXXXXXXXXXXXXXXX + GEE L L + S G Q R PASG G SP+ A G + VDTTSDR+DS+ + E + T SPP+LPLAERLRLRRL C
Sbjct: 7 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXDGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXXSCWRLSLERAGKDSEGSG---QPERFPASGEMPGGV--KSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA) HSP 1 Score: 150 bits (380), Expect = 9.570e-40 Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 427 STYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
STYIGFTV P RRIRQHNG I GA RT+ KRPW M +V GFPSKS+ALQFE AWQHP +DR +K KV L + R + G+ +KL +CKA++CL+PW RYGLG F + A + LP
Sbjct: 2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALP 123
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO) HSP 1 Score: 142 bits (358), Expect = 2.480e-35 Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 1 Query: 379 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 765
F+ CYLL S DPK+K TYIGFTV+P RR+RQHNG I GA+RTKR RPWDMV +V+GFP+K ALQFE AWQHP + ++ + L + R G K+RL ML LDPW Y L ++ L YA
Sbjct: 4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYA 130
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML) HSP 1 Score: 137 bits (344), Expect = 1.730e-34 Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 1 Query: 379 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 765
F+ CYLL+S +P+ K TYIGFTV+P RRIRQHNG I GA+RTK+KRPW+MV V+GF SK+ ALQFE AWQHP+ + + + P + R G+ K+++ AMLC W+R L ++F E+A
Sbjct: 1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR) HSP 1 Score: 135 bits (340), Expect = 1.870e-34 Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 726
++F+ CYLL S P+HK TYIGFTV+P RRIRQHNG + GA+RTK KRPW+MV ++GFP+ SALQFE AWQHP R V VR+ + + G+ +K++L AML L PW R
Sbjct: 27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F) HSP 1 Score: 138 bits (348), Expect = 3.440e-34 Identity = 78/195 (40.00%), Postives = 109/195 (55.90%), Query Frame = 1 Query: 364 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKL-----HLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASP---ENRLEAYRCALC 921
E +F+ CYLL S +PK+K TYIGFTVDP+RRIRQHNGGI GGA++T ++ PW+M+ +HGFP++ SAL+FE AWQHP + RR+K V + V R+ ML + PW R L IR+L++EY + L H+P+ V +P + P ++ E LE C +C
Sbjct: 4 EEESRFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI---------------VYGSIPSWKKPKSADIAREEELETKTCCIC 180
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU) HSP 1 Score: 136 bits (342), Expect = 1.390e-33 Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 1 Query: 376 KFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEY 762
+FF CYLL S+ P++K TYIGFTV+P RRIRQHNG I GA+RTKRKRPW+MV ++GFP+ SALQFE AWQHP + VR + G+ SK++L ML L PW + ++F +Y
Sbjct: 26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQY 150
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI0006AB688C (structure-specific endonuclease subunit SLX1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB688C) HSP 1 Score: 132 bits (333), Expect = 1.850e-33 Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 1 Query: 373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 726
K+FF CY+L S P+HK TYIGFTV+P RRIRQHNG I GAYRTK+KRPW+MV ++GFP+K SALQFE AWQHP R + VR+ + G+ S ++L ML L W R
Sbjct: 26 KEFFACYILTSLSPRHKGHTYIGFTVNPRRRIRQHNGEITSGAYRTKKKRPWEMVLCIYGFPTKVSALQFEWAWQHP----RESLAVREAAAAFKSISGLASNIKLAYTMLSLPAWNR 139
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001068F671 (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F671) HSP 1 Score: 136 bits (343), Expect = 1.970e-33 Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 1 Query: 364 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
E + KF+ CYLL +PK+K TYIGFTVDP+RRI+QHNGG+ GGAYRT K PW+MV VHGFP++ SAL+FE AWQHP R RR+K V + + R+ ML + PW R L I++L+E+Y + L P
Sbjct: 4 EEKSKFYGCYLLYCLNPKYKGRTYIGFTVDPNRRIKQHNGGVQKGGAYRTSNKGPWEMVLTVHGFPNEISALRFEWAWQHPFRSRRLKRVVANKKSTEK---NFAFYFRVLTEMLRIGPWNRLALTIQWLKEDYHMDFDLLKQP 144
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO) HSP 1 Score: 136 bits (343), Expect = 2.080e-33 Identity = 71/140 (50.71%), Postives = 90/140 (64.29%), Query Frame = 1 Query: 373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
KKFF CYLL S DPK K TYIGFTV+P RRIRQHNG I GA+RTK+ RPWDM +++GFP+K ALQFE AWQHP ++ +L R GV K+RL ML ++P+ Y L ++FL +Y+ A + P
Sbjct: 3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSP 140 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17074.1 >prot_C-linearis_contig97.17074.1 ID=prot_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp MLLASTRMEDGDAALSTSTATIHKAPKGHSTRKKGPEARKKFFHCYLLQSback to top mRNA from alignment at C-linearis_contig97:206945..210276- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17074.1 ID=mRNA_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3332bp|location=Sequence derived from alignment at C-linearis_contig97:206945..210276- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:206945..210276- >mRNA_C-linearis_contig97.17074.1 ID=mRNA_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig97:206945..210276- (Chordaria linearis ClinC8C monoicous)back to top |