mRNA_C-linearis_contig96.17055.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: D7G4B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B7_ECTSI) HSP 1 Score: 247 bits (631), Expect = 6.000e-67 Identity = 170/313 (54.31%), Postives = 187/313 (59.74%), Query Frame = 3 Query: 1938 PTPQTEESAATGAAPMLSPGLADRRKQSIQAEMKSFLEDSDEEAAEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXREEGGEGTTEAGGVRAVAPTEE--GEAGEEAAAA--DAIVTSSVTAVV--EAPLSPEQXXXXXXXLDTEFSATHARKVIGSGVVLERKASITGVVPELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRQKHATERQDMDLPLISAEMARMQSVKGKAQLHQRAIAAIEGPSKGDMGPSKGGSGTGRLGPDWTQRRESLEKFVVKYDKPENGSTS-TSSAADAPTRYLPLPAD 2855
P T A P +SPGLADRRK+SI AEMKSFLEDSDEEAA XX GEG+ + GV G+ EEA A DA S + V EA S + DTEFSA HA++VI SGVVLERKASITGVVPELKNKSQ KLKEEQEALRQKHATERQD D PLISAEM+R QSVKG+AQ+HQ+AIAAIEG GD G K GSGTGRLG DWTQRRE+LEKFVVKYDKPEN ST+ T S + PTRY+PLP D
Sbjct: 29 PAGTTAAPVAAAPVPAMSPGLADRRKESIAAEMKSFLEDSDEEAAXXXXXXAAVTEDGQAAEAPGAVERETDGGA-----GEGSGQEEGVAXXXXXXXXXGQGAEEAVALADDASKASDASGSVDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXKLKEEQEALRQKHATERQDTDFPLISAEMSRQQSVKGRAQMHQQAIAAIEG---GDRGTGKAGSGTGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPTD 333
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: A0A6H5KSY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY5_9PHAE) HSP 1 Score: 238 bits (608), Expect = 3.150e-62 Identity = 164/301 (54.49%), Postives = 181/301 (60.13%), Query Frame = 3 Query: 1986 LSPGLADRRKQSIQAEMKSFLEDSDEEAAEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXREEGGEGTT------EAGGVRAVAPTEEGEAGEEAAA-AD-AIVTSSVTAVV--EAPLSPEQXXXXXXXLDTEFSATHARKVIGSGVVLERKASITGVVPELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRQKHATERQDMDLPLISAEMARMQSVKGKAQLHQRAIAAIEGPSKGDMGPSKGGSGTGRLGPDWTQRRESLEKFVVKYDKPENGSTS-TSSAADAPTRYLPLPAD 2855
+SPGLAD+RK SI AEMKSFLEDSDEEAAEA +GG G E + G+ EEA A AD A S + V EA S + DTEFSA HA++VI SGVVLERKASITGVVPELKNKSQ KEEQEALRQKHATERQD DLPLISAEM+R QSVKG+AQ+HQ+AIAAIEG GD G K GSG GRLG DWTQRRE+LEKFVVKYDKPEN ST+ T S + PTRY+PLPAD
Sbjct: 234 MSPGLADKRKASIAAEMKSFLEDSDEEAAEATAATAPVTEDAQAAEAPGAAER-------ETDGGAGEVSEQEREEGVAMXXXXXXXXGQVAEEAVALADGASKASDASGAVDGEASSSGDMKPPAIAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEG---GDRGTGKAGSGRGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPAD 524
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.030e-27 Identity = 176/331 (53.17%), Postives = 194/331 (58.61%), Query Frame = 2 Query: 266 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGLAVAGDSAPNTKPSAXXXXXXXXXXXXXXXXXXXSGNTNTAGGAAAATVAAHSTQRHSYKAPSPTKTSSAGSKSAAAAADKNPRGCLASLGQVD-----QASASSSATAPLP-PPAQQRDQAPTSG---KPTPGKLSASRFGSFGDN---SSSGIRGDSGALPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--VQDLTSRFGGTGLGP-----GKRSTSGRIAELTRKFEK 1201
M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEYLREDLAKHGLAVAG PN K XXXXXXXXXXXXXXX +G + PRGCLASLGQVD A+ S++A PLP PP+QQ+ + T G +PTPGKLSASRFGSF ++ SS + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX S VQ LTSR G GLGP GKR+TSGRIAELTRKFEK
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGGVVPNRKAQGAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPR---------PRGCLASLGQVDGRVASAAADSTTAAGPLPNPPSQQQQRDQTVGSADRPTPGKLSASRFGSFRNSNADSSGAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRCTVESSSAPAPYTREEQGQEQKSAGGSASTSVQGLTSRLGSAGLGPSAGGGGKRTTSGRIAELTRKFEK 322
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 8.720e-10 Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 2 Query: 266 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEY 385
M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEY
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY 40 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17055.1 >prot_C-linearis_contig96.17055.1 ID=prot_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=313bp MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGLback to top mRNA from alignment at C-linearis_contig96:594224..609041+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17055.1 ID=mRNA_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14818bp|location=Sequence derived from alignment at C-linearis_contig96:594224..609041+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:594224..609041+ >mRNA_C-linearis_contig96.17055.1 ID=mRNA_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at C-linearis_contig96:594224..609041+ (Chordaria linearis ClinC8C monoicous)back to top |