mRNA_C-linearis_contig96.17055.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: D7G4B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B7_ECTSI) HSP 1 Score: 247 bits (631), Expect = 6.000e-67 Identity = 170/313 (54.31%), Postives = 187/313 (59.74%), Query Frame = 3 Query: 1938 PTPQTEESAATGAAPMLSPGLADRRKQSIQAEMKSFLEDSDEEAAEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXREEGGEGTTEAGGVRAVAPTEE--GEAGEEAAAA--DAIVTSSVTAVV--EAPLSPEQXXXXXXXLDTEFSATHARKVIGSGVVLERKASITGVVPELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRQKHATERQDMDLPLISAEMARMQSVKGKAQLHQRAIAAIEGPSKGDMGPSKGGSGTGRLGPDWTQRRESLEKFVVKYDKPENGSTS-TSSAADAPTRYLPLPAD 2855
P T A P +SPGLADRRK+SI AEMKSFLEDSDEEAA XX GEG+ + GV G+ EEA A DA S + V EA S + DTEFSA HA++VI SGVVLERKASITGVVPELKNKSQ KLKEEQEALRQKHATERQD D PLISAEM+R QSVKG+AQ+HQ+AIAAIEG GD G K GSGTGRLG DWTQRRE+LEKFVVKYDKPEN ST+ T S + PTRY+PLP D
Sbjct: 29 PAGTTAAPVAAAPVPAMSPGLADRRKESIAAEMKSFLEDSDEEAAXXXXXXAAVTEDGQAAEAPGAVERETDGGA-----GEGSGQEEGVAXXXXXXXXXGQGAEEAVALADDASKASDASGSVDGEASSSGDMKPPAVAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXKLKEEQEALRQKHATERQDTDFPLISAEMSRQQSVKGRAQMHQQAIAAIEG---GDRGTGKAGSGTGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPTD 333
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: A0A6H5KSY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY5_9PHAE) HSP 1 Score: 238 bits (608), Expect = 3.150e-62 Identity = 164/301 (54.49%), Postives = 181/301 (60.13%), Query Frame = 3 Query: 1986 LSPGLADRRKQSIQAEMKSFLEDSDEEAAEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXREEGGEGTT------EAGGVRAVAPTEEGEAGEEAAA-AD-AIVTSSVTAVV--EAPLSPEQXXXXXXXLDTEFSATHARKVIGSGVVLERKASITGVVPELKNKSQFSVEDATATISSGAISERTRKLKEEQEALRQKHATERQDMDLPLISAEMARMQSVKGKAQLHQRAIAAIEGPSKGDMGPSKGGSGTGRLGPDWTQRRESLEKFVVKYDKPENGSTS-TSSAADAPTRYLPLPAD 2855
+SPGLAD+RK SI AEMKSFLEDSDEEAAEA +GG G E + G+ EEA A AD A S + V EA S + DTEFSA HA++VI SGVVLERKASITGVVPELKNKSQ KEEQEALRQKHATERQD DLPLISAEM+R QSVKG+AQ+HQ+AIAAIEG GD G K GSG GRLG DWTQRRE+LEKFVVKYDKPEN ST+ T S + PTRY+PLPAD
Sbjct: 234 MSPGLADKRKASIAAEMKSFLEDSDEEAAEATAATAPVTEDAQAAEAPGAAER-------ETDGGAGEVSEQEREEGVAMXXXXXXXXGQVAEEAVALADGASKASDASGAVDGEASSSGDMKPPAIAERDTEFSAGHAKRVIESGVVLERKASITGVVPELKNKSQXXXXXXXXXXXXXXXXXXXXXXKEEQEALRQKHATERQDTDLPLISAEMSRQQSVKGRAQMHQQAIAAIEG---GDRGTGKAGSGRGRLGTDWTQRRETLEKFVVKYDKPENASTAGTPSTGEGPTRYIPLPAD 524
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.030e-27 Identity = 176/331 (53.17%), Postives = 194/331 (58.61%), Query Frame = 2 Query: 266 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGLAVAGDSAPNTKPSAXXXXXXXXXXXXXXXXXXXSGNTNTAGGAAAATVAAHSTQRHSYKAPSPTKTSSAGSKSAAAAADKNPRGCLASLGQVD-----QASASSSATAPLP-PPAQQRDQAPTSG---KPTPGKLSASRFGSFGDN---SSSGIRGDSGALPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--VQDLTSRFGGTGLGP-----GKRSTSGRIAELTRKFEK 1201
M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEYLREDLAKHGLAVAG PN K XXXXXXXXXXXXXXX +G + PRGCLASLGQVD A+ S++A PLP PP+QQ+ + T G +PTPGKLSASRFGSF ++ SS + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX S VQ LTSR G GLGP GKR+TSGRIAELTRKFEK
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGGVVPNRKAQGAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPR---------PRGCLASLGQVDGRVASAAADSTTAAGPLPNPPSQQQQRDQTVGSADRPTPGKLSASRFGSFRNSNADSSGAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRCTVESSSAPAPYTREEQGQEQKSAGGSASTSVQGLTSRLGSAGLGPSAGGGGKRTTSGRIAELTRKFEK 322
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 8.720e-10 Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 2 Query: 266 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEY 385
M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEY
Sbjct: 1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY 40 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17055.1 >prot_C-linearis_contig96.17055.1 ID=prot_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=313bp MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGLback to top mRNA from alignment at C-linearis_contig96:594224..609041+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17055.1 ID=mRNA_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14818bp|location=Sequence derived from alignment at C-linearis_contig96:594224..609041+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:594224..609041+ >mRNA_C-linearis_contig96.17055.1 ID=mRNA_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at C-linearis_contig96:594224..609041+ (Chordaria linearis ClinC8C monoicous)back to top |