mRNA_C-linearis_contig96.17045.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17045.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI) HSP 1 Score: 570 bits (1468), Expect = 7.010e-192 Identity = 386/602 (64.12%), Postives = 424/602 (70.43%), Query Frame = 1 Query: 178 MVHHKEMAQLLLESGALWASRLNVPWFLAGAGLGVPVAVGAVSTWDSKLLSLVTTLGGVIGGVAADRLSTTALDTLAGSD----------FSCYDVLTKGVGPACLALVVLSRNIRSEPTVAVKPAAFVALVSLLLEPLFSAHVLG--------------------TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAVSRARWLTGGAQLALWAAVVLAYANLSLRLSRAGGGSGRTVAGYMTALRSLAAKKRGTGGWVRIDRWGKGGGGWRGEGEEGGTAPNSPVPGGWGXXXXXXXXVRDNSRPRAHSLLGSLYETLMSGGGWRGGGRVDARAMALSQYQTMDDNGPPFERGEVTVRSIYCFGLDAAITGRPPSASLNNGGAXXXXXXXXXXXXXX----------IIAGGTSRPFYVTITLGGVTAKTSPRPGFSPSFTEVFPLGCDCPIRGAFLTVAVVDSFETGRSVRGDRIVGEVHLPLDAAQLVPGT-GTSSHGGEPSYVPSSGNDTGXXXXXXXXXXGAAYRLSGDWELQGALGGSLGGARVGADIVIHGPPSPSSAAGRLRRRR-ESVGWYAR 1857
M EM QLLL SGA+WAS LN+PWFLAGAG+GVP AVG V+T +SKLLSL TTLGGV+GGVAADRLSTT ++LAG+D F+CYDVLTKGVGPACL LVVLSR+IRSEP+VAVKPAA VAL +LLLEPLFSA+VLG T + XXXXXXXXXXXXXXXXXXXXXXXXX V+RARWLT GAQL LWAAVVLAYAN+SLRLSR G G+TV GYM+ALRSLAAKKRGTGGWVRID+WG G XXXXXXXX RA+ LLGSLYETLM GR+ AMAL Q+Q D GPPFERGEVTVRSIYC GLDA+ITGRPPS + GG XXXXXXXXXX +IAGG+SRPFYVT++LGG+TAKTS R GFSP+FTEVFPLGCDCPIRGA+LT+AVVDSFETGRS RGDR+VGEVHLPL+AAQLVPGT G + S SSG G G AYRL GDWELQGALGG L GARVGADI++HGPPSPSSAAGRLRRRR ESVGWYAR
Sbjct: 1 MAQDHEMLQLLLRSGAMWASSLNIPWFLAGAGVGVPAAVGTVTTGNSKLLSLATTLGGVLGGVAADRLSTTISESLAGNDVGXXXXXGCEFTCYDVLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRSGLARLLLLRDVPHRVLGQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSR--GPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTGX---------------------XXXXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICPEAMALCQHQKSYD-GPPFERGEVTVRSIYCSGLDASITGRPPSNGNSVGGVGVGGXXXXXXXXXXXXXXXXXXGGLIAGGSSRPFYVTVSLGGLTAKTSARQGFSPTFTEVFPLGCDCPIRGAYLTIAVVDSFETGRSGRGDRVVGEVHLPLEAAQLVPGTSGLDDNADMFSSSSSSGGWDGGS--------GPAYRLRGDWELQGALGGPLCGARVGADIMVHGPPSPSSAAGRLRRRRRESVGWYAR 570 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17045.1 >prot_C-linearis_contig96.17045.1 ID=prot_C-linearis_contig96.17045.1|Name=mRNA_C-linearis_contig96.17045.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=561bp MVHHKEMAQLLLESGALWASRLNVPWFLAGAGLGVPVAVGAVSTWDSKLLback to top mRNA from alignment at C-linearis_contig96:473803..478802+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17045.1 ID=mRNA_C-linearis_contig96.17045.1|Name=mRNA_C-linearis_contig96.17045.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5000bp|location=Sequence derived from alignment at C-linearis_contig96:473803..478802+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:473803..478802+ >mRNA_C-linearis_contig96.17045.1 ID=mRNA_C-linearis_contig96.17045.1|Name=mRNA_C-linearis_contig96.17045.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3366bp|location=Sequence derived from alignment at C-linearis_contig96:473803..478802+ (Chordaria linearis ClinC8C monoicous)back to top |