Homology
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match:
D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)
HSP 1 Score: 167 bits (422), Expect = 3.460e-45
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 3
Query: 132 GVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAE 509
GV AV+C + AVA A KW S RRMLGNIASGR+F+DALS VA+LEA ++LAAE +DL+TAR+E+ERKSRE+DE VTQVLTHLDKC GG EIGVARKKQ+HRAE LG+RISKILPGG +
Sbjct: 10 GVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVD 137
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match:
A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)
HSP 1 Score: 166 bits (421), Expect = 4.800e-45
Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 3
Query: 96 MSGSSLWRERRAGVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGG 500
MSGS + GV AV+ + AVA A KW S RRMLGNIASGR+FID LS VA+LEA ++LAAE +DL+TAR+EHERKSRE+DE VTQVLTHLDKC GGGEI VARKKQ+HRAEALG+RIS ILPGG
Sbjct: 1 MSGSL---GQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGG 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.46e-45 / Id = 68.75 Expect = 4.80e-45 / Id = 67.15 Sequence D7G4A6_ECTSI A0A6H5JHT5_9PHAE
Match Name E-value Identity Description
D7G4A6_ECTSI 3.460e-45 68.75 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JHT5_9PHAE 4.800e-45 67.15 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-02_001960.1 Exons 5 Model size 1980 Cds size 420 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930825.2390134-UTR-C-linearis_contig96:444055..444150 1622930825.2390134-UTR-C-linearis_contig96:444055..444150 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 444056..444150 + 1690881269.3580954-UTR-C-linearis_contig96:444055..444150 1690881269.3580954-UTR-C-linearis_contig96:444055..444150 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 444056..444150 + 1622930825.3418188-UTR-C-linearis_contig96:448010..448070 1622930825.3418188-UTR-C-linearis_contig96:448010..448070 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 448011..448070 + 1690881269.409433-UTR-C-linearis_contig96:448010..448070 1690881269.409433-UTR-C-linearis_contig96:448010..448070 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 448011..448070 + 1622930825.3613527-UTR-C-linearis_contig96:448086..449491 1622930825.3613527-UTR-C-linearis_contig96:448086..449491 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 448087..449491 + 1690881269.4220471-UTR-C-linearis_contig96:448086..449491 1690881269.4220471-UTR-C-linearis_contig96:448086..449491 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 448087..449491 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930825.259226-CDS-C-linearis_contig96:444150..444282 1622930825.259226-CDS-C-linearis_contig96:444150..444282 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 444151..444282 + 1690881269.3680983-CDS-C-linearis_contig96:444150..444282 1690881269.3680983-CDS-C-linearis_contig96:444150..444282 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 444151..444282 + 1622930825.2759135-CDS-C-linearis_contig96:446197..446311 1622930825.2759135-CDS-C-linearis_contig96:446197..446311 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 446198..446311 + 1690881269.3779554-CDS-C-linearis_contig96:446197..446311 1690881269.3779554-CDS-C-linearis_contig96:446197..446311 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 446198..446311 + 1622930825.2930605-CDS-C-linearis_contig96:446854..446959 1622930825.2930605-CDS-C-linearis_contig96:446854..446959 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 446855..446959 + 1690881269.3882139-CDS-C-linearis_contig96:446854..446959 1690881269.3882139-CDS-C-linearis_contig96:446854..446959 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 446855..446959 + 1622930825.319051-CDS-C-linearis_contig96:447941..448010 1622930825.319051-CDS-C-linearis_contig96:447941..448010 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 447942..448010 + 1690881269.3990002-CDS-C-linearis_contig96:447941..448010 1690881269.3990002-CDS-C-linearis_contig96:447941..448010 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 447942..448010 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17043.1
>prot_C-linearis_contig96.17043.1 ID=prot_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=140bp
MSGSSLWRERRAGVTVAVLCCIGAVAYVGAAKWNSRRPTRRMLGNIASGR back to top mRNA from alignment at C-linearis_contig96:444056..449491+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5436bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous)CACAGACACACAGGGCTCTTCGTGCGTTCGGGGGGAGAGGCCTCCCTCTT
GGGGTGTATCGCGTCTCAGCGTCGGTGAGCGGGCGAGAGAGCACG ATGAG
CGGGTCCAGCCTTTGGAGGGAGCGGCGGGCGGGCGTCACTGTTGCGGTCC
TGTGTTGCATCGGTGCCGTCGCGTACGTCGGGGCTGCCAAGTGGAACAGC
AGACGGCCGACGAGACGGATGCTTGGG GTGAGTTGAGCGCGCGTGGAGTA
TATGGGCATGGACCGCACTCCCTTGGTCGTCGGCCCAGCTTTGCTTTGTC
CGCTTGCTGCGTTGATGTGGCGCGTACGAGCACCGGTGGTGCGGAACCTG
CTGCTGTACGTGCACACGGCACGTGCAGCGCTGCAGCACTCCTGGGTTCC
AAAACACGATGTGTGGAGATGCGGCGGCTAGATGAGTGGCACCATTGTTT
GGATTTTCGATCCATTGGAACATGCATGACCCATCCACCTCGCATATCTT
TGGCCTGGGGTGAGGTTCGACATCGATGTCGGTTGACAACGCTCACATCA
ACAGAGTAGATCGAAGTTTAAGTTTGGAGTGTAGTCTAAACATCCCACCC
ACAACACAACCAGGAGTTACAGCAGTAGGAGTTCGGAGTTTCCGTCATAC
GGCGATAGCATCGCATCATGCTATAGTGCTATCCACCAAGTGGATCTTGA
TGGTGCTCGCTTGAATACAGTGTGTCCCGCTCCACACTATAGTGAAGACA
CGCACTTGCAGTATTGTACCGGCGAATTTCAAACCCGAAAATACACAGTG
ATGTGAAAAACTGCTAACCGGTTATAACCGGTTCTCACTTTCGCGGTAAG
TTACATGGAAATTCCCGGTTATTTTCTCAGTTTTTTCTTTTCCTTCTTTA
TTTTTTATTTTTTTGCTTGATTTTTATTTTTTGCCACACGCATTTGCGTG
CGATCTGCGATCTGTGGGGGGAGTCAGTACAGTAGCACAATAATAGTCTA
TTAATAGTGCTTATTTCTTATTTTTTCGAAGCGTTTAGTCTTCGTTATTT
TCTACGGTACAACTTAGGACACTAAATGATCAAGACTCATGAACCATTAA
GCATGTTTATTTTTTATTTTTTGGTCTCCGGAGGTACGATGTATCACAAC
CAAAATTAGCATTCATTGTAACATTGTAACAGGGCAGAGAGCATACGCGA
TAAACATATATATATACGAAGTACAGCAGCAACAGCACAGCAGTGACAGC
ACCCAGAGAACCGCAATATCATACAGCAATACAGCACGTCTCGAGAGCTC
GAGAGCCTTTTCAAACGAACGCTATTACGTTGTTTAACACCCCGGGGATG
GGTCGTTTTCGTCCCCGGTAGGCGCGGTTATAACCGGTAAGTTACATGGC
TGAACCGCGGTTTTTCACATCCCTGAAAATACCAGCATCCGGGGGCCCCG
TGATATAACTCGCGGTTTTTCTTTGTTGCTGTTCACGCCTTTTTACTTGG
GCGTGTCAACACATTCCTCCCGAGGGACCGTGAGAGCATCTGCCGGGTAC
TCCCATGCCAGCAAGCCCCCCTCACAAACATTTCACAATCTTCATCTGCG
AGCCCTCTCTGCTCCCAAGATTGGACATCATGGAACATAAAAAAGGCAAA
AAATGCGGCGGCGAAGTCTTGGGGCTAGTTCTGCTATTTTCGCTGCACGC
CACATGAATTGAGGCTCATTCTACATACGAGCGGACCTGGCGGTAGCTTC
TCCGTTCAAAGACCTTTTAGTGCTGCTGCTGCTGCTGGTAGCGTGACAGC
GTCCCTGTAGTAAATAGGCCGATGTTTTGCCACATGGAAAAGAGGTGTTG
TGATTTTTCGGGCCACATTGGGGACAACAAAGGTCGAAACACTATTGGCG
ATGCATGTCTTGCCCTGCTGGAGAGAAGGAAGGGTATTCCTTTACAAACC
GCCACTCTGTGCGTGACAACATGTACCGGTATGTATCTACCTACCAAACA
GGAACGTGTTTTCGCATGCTGCGTGGTTGCTACCCAGAACTCATTGCCGA
CGGTAGATACCTTGCGGTTCTATCCCCACAGCAGTGCCTCCTGAAACCCG
CCACCGGTCAATGCACCCGTCCATCTTCATGTCCCACCTCAGAACATCGC
TAGCGGGCGCGATTTCATCGACGCACTGTCGACAGGGGTGGCGGAGCTGG
AGGCAAAGGTTTCCCTGGCCGCCGAGGGAACTGACCTGGAAACAGCTCGA
GAAGAG GTATGTGCGCCAGCCGCGTGATTTGCACGAGAAATCGTGATCTT
GCTACAAAATAGTTTTCTCCATATGTAGTCGACCCGAGAGCACCTATTTG
TTGCAATCCATGATAAAGACTTGAACATGACAATGATGGACACTTTTTTT
GGGTCAGATTTCCAACTCCAAGCGTAAGGAAGGCCTGCTGGGACGAGCCC
CGCGGCGATGGCTTTCTTTGAAAACCTCAGCACCGTGTGAAGCCACTTCA
GCTTTTTTGCCTGGATACAAGAGGGGCAGCATATTTGTTGATGGTACTGT
CGACAAGGCACGACCATGCGCAAGGCTGGGTTTAAATCAACGTGTCCACA
CTCCCAATCTCAAGGGCCTCTTATATGCCTTAAAAGTCGTTCACGAGTTT
CAAGTGAGATATTTTGGTCTGGCTGATGACTACGGCGACAGAGTCGATAC
AGCCATGTTATTAATGTTTCCCGCGCCTCTCGACCGCCCACCGCCTTCGC
CACCACGCCTTCCACCTATCGTGCAAACCCTGTCCGCCGGTGCTTGTAGC
ACGAGAGAAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACC
CACCTCGACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAA
GCAG GCGAGGAGCCCCACTTGACTTCACTGCTACGCGTACTTTTGGCCTT
GAAACCGCCCCTTTTCGGAAAGGTTTCTTGCACGCTCCGCCTTTGCGCTC
TACCATCACAGCGGGCCCCATTTTCGCCCAGGCCAGCCCCCCAATGCGCC
GGGGTTATGCGGTCCACGGGGCACAGAGTGCGAATATTTTTGTAAGCTTT
TGGGATCAAGCAAATGTGTTCCTAGGAATCGACAGGCCACAACCATCCGC
CGAGTGGTCGCCCCAGCGACCCATATGCTGGTGTTGATACCGGCGAGGTC
GAGGGGTCAGGGGGGCTGGAGCGTGTGGGTGTTCTGTGTGTCTGCGTGTG
CTCGTTCTGTTAGCCTCAAGCAAGCCTGCAGAAACGTGCAGTGTCCCCCG
GCCAGCATTCTGCAAGAAGTTTCGAGTGGTCTAGGCTGAACAGCAAAGTT
GGTAGGCTAAATTGTAAGCTAAATTAGCCCCGAGGGAGTGGTGACATTCT
CGGCAAAACGCAACTTCCACGTAATTTGTTCAGTCGACTGGGATCCTCGT
CCACGATGCCATCTGCGCAGTCGCTCGTTCCTATCGGCCGCGTAGCTTTT
TATCCTGTCTAGGCGCCATGGTTTCTGCCTTTCAAGTGTAAGCATCACCC
GGACCTTTTCAGTACGTGTCGCTACTTTAGCTGCGCTGAACCACAGCACC
TACCGGTACTTGACCCGTTGTGGAGACATGCTGCATCCTGCAGTCTCGTG
AGTAAGTCGCCCTTGGGTGCAAGCGCTTTCATATGCACCGAGCTTGTGGT
CGGTTCATGCGGCGCACGTTTCTTCTACTGCCTGGAACCCACCCCCTCAA
CCATCTGCTGCTACTACTGCTGCTGCTACTGCTGCTACTGCTGCTACTGC
TGGCGATACCTTGTCTGATATCCGTCGTGTTCGCCTTTACCCTTGCAATT
TGATTTTTGGTGTGGGATGTGGGTTTTGGTTCACAGGTTCACCGAGCGGA
GGCGTTGGGTGTTCGAATTAGCAAGATTCTCCCTGGGGGAACTGCCGAAG
ATTGA AGGAGGGAGACAGAGACTGAAAGAGCCGCAGCCGCAGCAGCAGCA
GCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCACGGGTAACGCGTGC
TAGAAAGGTTCATGATCGAGGGAAGCAGCAAGGAAAACCAAGCCCATCAA
TATTCGCTTCTAGAGGTTCTCAAGGACCGATTTGCTATTTTTAACGGCTA
CCCGTAGCTTGTCTGTACGCGACAAAGGTGTTTTCAGTACTTGCGTACGC
CTCAGAAATTCCACTGAGAGAAAGCGGCGAGGCCGACCGTCGTCAGTTTC
TAGAGGAATTGAATGTCTCGGCGAAACGCAGAATGCAGGGGAATGGGGCT
TTCGCCTGAAGACCCGCCAGCTGCACCACAGCTAAACACTGGGATGGACG
CCATACGTTGAAGAGAGTATTTAGCAGCTGCAGGAAAATGAAAGCGTCCA
GTAACCTTGGTTTTGTAGTACATGTGTACAAGTCGGGTGTTTGTGAAGTC
AGGACAACGCTGGTTTGGGGTGCAGTCGGCAATGCCACCTCAAAGATTTT
CAGCTTTTGTACGTCTGTTGCTTGTGGCCGCGAGTGTTACTGTTTGAGGC
CTGTTCAGGCGGAATTGTGGGATATCCACGTCGGTCCCCCGTTGTTAGGT
GTGAGTACAACAGTAGTAGTGCTCAATTCAAGGCCGATCGCTGTTGTTGT
AGTGTTCGTTCTGCTCTCGGGTCTTTCGTTCTGGTGTAGTGTTATGCAAG
AAGATTGGTAGACAGTCTAGAGCTCGTTATCATTCTTCTCTATTTCGTGA
CATGCTGTCGCGTCGCCCTTCTGTTTTGGCGTTATTGTAAGGCGACGTTA
TTGTAAGGCGGCGTTACTGTAGGGCGGCGTTATTGTAAGGCGGCGTTGTT
GTAAGGCGAAGCCTCTTAATTGTTGCTCCGAGCGACGCAACGCAACCTTT
GGTGTTACCATATCATCCCACGCTTTGTTCCGACGGTGATCGGAAGGACG
GGGTCGTGCAAGTGTGTGCTCTTCACTTTGGAGCGGGCCAAGATTGAGCG
ATATAGCCGACGCCATCCAAGTCAAGTTCCTGTCTTTTCTTCTGCGAATT
TTTCTCTCTGCAGGTTCTCATTGTTCTTGTTCTGTTATATTTCTACTCCG
TCGGTTTCCGTCGTGAGTGAAAAGCCGGGTTCATCTTTCGGCGTGCCCCC
GAACATGCACGGTTGTTCTGTATGTGTGTGGTATGTGGTATATTTGAGGC
TTCCGAGACGAAATGTATATGGAGTATGAAGGTGCTTCGTGTAGTGGTGG
ACGGCTGGCACGCGGGAGAGCTTGTTACAGTAGTTATATATTTCTTGTCT
CCCGCTGTTTGGTAATGCAGAGCTGTGTGCGTAATCGAGCTCGAAGTAAT
TGGACCAGAAACCGTGAAGGTTATGCTTGAGAATGTACTTCGTATGTAGT
ATGTCGCACCAGCAGCCATTCGGCTCTACTCCCGTG back to top Coding sequence (CDS) from alignment at C-linearis_contig96:444056..449491+
>mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous) back to top