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Homology
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI) HSP 1 Score: 167 bits (422), Expect = 3.460e-45 Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 3 Query: 132 GVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAE 509
GV AV+C + AVA A KW S RRMLGNIASGR+F+DALS VA+LEA ++LAAE +DL+TAR+E+ERKSRE+DE VTQVLTHLDKC GG EIGVARKKQ+HRAE LG+RISKILPGG +
Sbjct: 10 GVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVD 137
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE) HSP 1 Score: 166 bits (421), Expect = 4.800e-45 Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 3 Query: 96 MSGSSLWRERRAGVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGG 500
MSGS + GV AV+ + AVA A KW S RRMLGNIASGR+FID LS VA+LEA ++LAAE +DL+TAR+EHERKSRE+DE VTQVLTHLDKC GGGEI VARKKQ+HRAEALG+RIS ILPGG
Sbjct: 1 MSGSL---GQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGG 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-02_001960.1 |
Exons | 5 |
Model size | 1980 |
Cds size | 420 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930825.2390134-UTR-C-linearis_contig96:444055..444150 | 1622930825.2390134-UTR-C-linearis_contig96:444055..444150 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 444056..444150 + |
1690881269.3580954-UTR-C-linearis_contig96:444055..444150 | 1690881269.3580954-UTR-C-linearis_contig96:444055..444150 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 444056..444150 + |
1622930825.3418188-UTR-C-linearis_contig96:448010..448070 | 1622930825.3418188-UTR-C-linearis_contig96:448010..448070 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 448011..448070 + |
1690881269.409433-UTR-C-linearis_contig96:448010..448070 | 1690881269.409433-UTR-C-linearis_contig96:448010..448070 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 448011..448070 + |
1622930825.3613527-UTR-C-linearis_contig96:448086..449491 | 1622930825.3613527-UTR-C-linearis_contig96:448086..449491 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 448087..449491 + |
1690881269.4220471-UTR-C-linearis_contig96:448086..449491 | 1690881269.4220471-UTR-C-linearis_contig96:448086..449491 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig96 448087..449491 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930825.259226-CDS-C-linearis_contig96:444150..444282 | 1622930825.259226-CDS-C-linearis_contig96:444150..444282 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 444151..444282 + |
1690881269.3680983-CDS-C-linearis_contig96:444150..444282 | 1690881269.3680983-CDS-C-linearis_contig96:444150..444282 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 444151..444282 + |
1622930825.2759135-CDS-C-linearis_contig96:446197..446311 | 1622930825.2759135-CDS-C-linearis_contig96:446197..446311 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 446198..446311 + |
1690881269.3779554-CDS-C-linearis_contig96:446197..446311 | 1690881269.3779554-CDS-C-linearis_contig96:446197..446311 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 446198..446311 + |
1622930825.2930605-CDS-C-linearis_contig96:446854..446959 | 1622930825.2930605-CDS-C-linearis_contig96:446854..446959 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 446855..446959 + |
1690881269.3882139-CDS-C-linearis_contig96:446854..446959 | 1690881269.3882139-CDS-C-linearis_contig96:446854..446959 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 446855..446959 + |
1622930825.319051-CDS-C-linearis_contig96:447941..448010 | 1622930825.319051-CDS-C-linearis_contig96:447941..448010 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 447942..448010 + |
1690881269.3990002-CDS-C-linearis_contig96:447941..448010 | 1690881269.3990002-CDS-C-linearis_contig96:447941..448010 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 447942..448010 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17043.1 >prot_C-linearis_contig96.17043.1 ID=prot_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=140bp
MSGSSLWRERRAGVTVAVLCCIGAVAYVGAAKWNSRRPTRRMLGNIASGR DFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTH LDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAED* back to topmRNA from alignment at C-linearis_contig96:444056..449491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5436bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous) CACAGACACACAGGGCTCTTCGTGCGTTCGGGGGGAGAGGCCTCCCTCTT
GGGGTGTATCGCGTCTCAGCGTCGGTGAGCGGGCGAGAGAGCACGATGAG
CGGGTCCAGCCTTTGGAGGGAGCGGCGGGCGGGCGTCACTGTTGCGGTCC
TGTGTTGCATCGGTGCCGTCGCGTACGTCGGGGCTGCCAAGTGGAACAGC
AGACGGCCGACGAGACGGATGCTTGGGGTGAGTTGAGCGCGCGTGGAGTA
TATGGGCATGGACCGCACTCCCTTGGTCGTCGGCCCAGCTTTGCTTTGTC
CGCTTGCTGCGTTGATGTGGCGCGTACGAGCACCGGTGGTGCGGAACCTG
CTGCTGTACGTGCACACGGCACGTGCAGCGCTGCAGCACTCCTGGGTTCC
AAAACACGATGTGTGGAGATGCGGCGGCTAGATGAGTGGCACCATTGTTT
GGATTTTCGATCCATTGGAACATGCATGACCCATCCACCTCGCATATCTT
TGGCCTGGGGTGAGGTTCGACATCGATGTCGGTTGACAACGCTCACATCA
ACAGAGTAGATCGAAGTTTAAGTTTGGAGTGTAGTCTAAACATCCCACCC
ACAACACAACCAGGAGTTACAGCAGTAGGAGTTCGGAGTTTCCGTCATAC
GGCGATAGCATCGCATCATGCTATAGTGCTATCCACCAAGTGGATCTTGA
TGGTGCTCGCTTGAATACAGTGTGTCCCGCTCCACACTATAGTGAAGACA
CGCACTTGCAGTATTGTACCGGCGAATTTCAAACCCGAAAATACACAGTG
ATGTGAAAAACTGCTAACCGGTTATAACCGGTTCTCACTTTCGCGGTAAG
TTACATGGAAATTCCCGGTTATTTTCTCAGTTTTTTCTTTTCCTTCTTTA
TTTTTTATTTTTTTGCTTGATTTTTATTTTTTGCCACACGCATTTGCGTG
CGATCTGCGATCTGTGGGGGGAGTCAGTACAGTAGCACAATAATAGTCTA
TTAATAGTGCTTATTTCTTATTTTTTCGAAGCGTTTAGTCTTCGTTATTT
TCTACGGTACAACTTAGGACACTAAATGATCAAGACTCATGAACCATTAA
GCATGTTTATTTTTTATTTTTTGGTCTCCGGAGGTACGATGTATCACAAC
CAAAATTAGCATTCATTGTAACATTGTAACAGGGCAGAGAGCATACGCGA
TAAACATATATATATACGAAGTACAGCAGCAACAGCACAGCAGTGACAGC
ACCCAGAGAACCGCAATATCATACAGCAATACAGCACGTCTCGAGAGCTC
GAGAGCCTTTTCAAACGAACGCTATTACGTTGTTTAACACCCCGGGGATG
GGTCGTTTTCGTCCCCGGTAGGCGCGGTTATAACCGGTAAGTTACATGGC
TGAACCGCGGTTTTTCACATCCCTGAAAATACCAGCATCCGGGGGCCCCG
TGATATAACTCGCGGTTTTTCTTTGTTGCTGTTCACGCCTTTTTACTTGG
GCGTGTCAACACATTCCTCCCGAGGGACCGTGAGAGCATCTGCCGGGTAC
TCCCATGCCAGCAAGCCCCCCTCACAAACATTTCACAATCTTCATCTGCG
AGCCCTCTCTGCTCCCAAGATTGGACATCATGGAACATAAAAAAGGCAAA
AAATGCGGCGGCGAAGTCTTGGGGCTAGTTCTGCTATTTTCGCTGCACGC
CACATGAATTGAGGCTCATTCTACATACGAGCGGACCTGGCGGTAGCTTC
TCCGTTCAAAGACCTTTTAGTGCTGCTGCTGCTGCTGGTAGCGTGACAGC
GTCCCTGTAGTAAATAGGCCGATGTTTTGCCACATGGAAAAGAGGTGTTG
TGATTTTTCGGGCCACATTGGGGACAACAAAGGTCGAAACACTATTGGCG
ATGCATGTCTTGCCCTGCTGGAGAGAAGGAAGGGTATTCCTTTACAAACC
GCCACTCTGTGCGTGACAACATGTACCGGTATGTATCTACCTACCAAACA
GGAACGTGTTTTCGCATGCTGCGTGGTTGCTACCCAGAACTCATTGCCGA
CGGTAGATACCTTGCGGTTCTATCCCCACAGCAGTGCCTCCTGAAACCCG
CCACCGGTCAATGCACCCGTCCATCTTCATGTCCCACCTCAGAACATCGC
TAGCGGGCGCGATTTCATCGACGCACTGTCGACAGGGGTGGCGGAGCTGG
AGGCAAAGGTTTCCCTGGCCGCCGAGGGAACTGACCTGGAAACAGCTCGA
GAAGAGGTATGTGCGCCAGCCGCGTGATTTGCACGAGAAATCGTGATCTT
GCTACAAAATAGTTTTCTCCATATGTAGTCGACCCGAGAGCACCTATTTG
TTGCAATCCATGATAAAGACTTGAACATGACAATGATGGACACTTTTTTT
GGGTCAGATTTCCAACTCCAAGCGTAAGGAAGGCCTGCTGGGACGAGCCC
CGCGGCGATGGCTTTCTTTGAAAACCTCAGCACCGTGTGAAGCCACTTCA
GCTTTTTTGCCTGGATACAAGAGGGGCAGCATATTTGTTGATGGTACTGT
CGACAAGGCACGACCATGCGCAAGGCTGGGTTTAAATCAACGTGTCCACA
CTCCCAATCTCAAGGGCCTCTTATATGCCTTAAAAGTCGTTCACGAGTTT
CAAGTGAGATATTTTGGTCTGGCTGATGACTACGGCGACAGAGTCGATAC
AGCCATGTTATTAATGTTTCCCGCGCCTCTCGACCGCCCACCGCCTTCGC
CACCACGCCTTCCACCTATCGTGCAAACCCTGTCCGCCGGTGCTTGTAGC
ACGAGAGAAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACC
CACCTCGACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAA
GCAGGCGAGGAGCCCCACTTGACTTCACTGCTACGCGTACTTTTGGCCTT
GAAACCGCCCCTTTTCGGAAAGGTTTCTTGCACGCTCCGCCTTTGCGCTC
TACCATCACAGCGGGCCCCATTTTCGCCCAGGCCAGCCCCCCAATGCGCC
GGGGTTATGCGGTCCACGGGGCACAGAGTGCGAATATTTTTGTAAGCTTT
TGGGATCAAGCAAATGTGTTCCTAGGAATCGACAGGCCACAACCATCCGC
CGAGTGGTCGCCCCAGCGACCCATATGCTGGTGTTGATACCGGCGAGGTC
GAGGGGTCAGGGGGGCTGGAGCGTGTGGGTGTTCTGTGTGTCTGCGTGTG
CTCGTTCTGTTAGCCTCAAGCAAGCCTGCAGAAACGTGCAGTGTCCCCCG
GCCAGCATTCTGCAAGAAGTTTCGAGTGGTCTAGGCTGAACAGCAAAGTT
GGTAGGCTAAATTGTAAGCTAAATTAGCCCCGAGGGAGTGGTGACATTCT
CGGCAAAACGCAACTTCCACGTAATTTGTTCAGTCGACTGGGATCCTCGT
CCACGATGCCATCTGCGCAGTCGCTCGTTCCTATCGGCCGCGTAGCTTTT
TATCCTGTCTAGGCGCCATGGTTTCTGCCTTTCAAGTGTAAGCATCACCC
GGACCTTTTCAGTACGTGTCGCTACTTTAGCTGCGCTGAACCACAGCACC
TACCGGTACTTGACCCGTTGTGGAGACATGCTGCATCCTGCAGTCTCGTG
AGTAAGTCGCCCTTGGGTGCAAGCGCTTTCATATGCACCGAGCTTGTGGT
CGGTTCATGCGGCGCACGTTTCTTCTACTGCCTGGAACCCACCCCCTCAA
CCATCTGCTGCTACTACTGCTGCTGCTACTGCTGCTACTGCTGCTACTGC
TGGCGATACCTTGTCTGATATCCGTCGTGTTCGCCTTTACCCTTGCAATT
TGATTTTTGGTGTGGGATGTGGGTTTTGGTTCACAGGTTCACCGAGCGGA
GGCGTTGGGTGTTCGAATTAGCAAGATTCTCCCTGGGGGAACTGCCGAAG
ATTGAAGGAGGGAGACAGAGACTGAAAGAGCCGCAGCCGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGGTAACGCGTGC
TAGAAAGGTTCATGATCGAGGGAAGCAGCAAGGAAAACCAAGCCCATCAA
TATTCGCTTCTAGAGGTTCTCAAGGACCGATTTGCTATTTTTAACGGCTA
CCCGTAGCTTGTCTGTACGCGACAAAGGTGTTTTCAGTACTTGCGTACGC
CTCAGAAATTCCACTGAGAGAAAGCGGCGAGGCCGACCGTCGTCAGTTTC
TAGAGGAATTGAATGTCTCGGCGAAACGCAGAATGCAGGGGAATGGGGCT
TTCGCCTGAAGACCCGCCAGCTGCACCACAGCTAAACACTGGGATGGACG
CCATACGTTGAAGAGAGTATTTAGCAGCTGCAGGAAAATGAAAGCGTCCA
GTAACCTTGGTTTTGTAGTACATGTGTACAAGTCGGGTGTTTGTGAAGTC
AGGACAACGCTGGTTTGGGGTGCAGTCGGCAATGCCACCTCAAAGATTTT
CAGCTTTTGTACGTCTGTTGCTTGTGGCCGCGAGTGTTACTGTTTGAGGC
CTGTTCAGGCGGAATTGTGGGATATCCACGTCGGTCCCCCGTTGTTAGGT
GTGAGTACAACAGTAGTAGTGCTCAATTCAAGGCCGATCGCTGTTGTTGT
AGTGTTCGTTCTGCTCTCGGGTCTTTCGTTCTGGTGTAGTGTTATGCAAG
AAGATTGGTAGACAGTCTAGAGCTCGTTATCATTCTTCTCTATTTCGTGA
CATGCTGTCGCGTCGCCCTTCTGTTTTGGCGTTATTGTAAGGCGACGTTA
TTGTAAGGCGGCGTTACTGTAGGGCGGCGTTATTGTAAGGCGGCGTTGTT
GTAAGGCGAAGCCTCTTAATTGTTGCTCCGAGCGACGCAACGCAACCTTT
GGTGTTACCATATCATCCCACGCTTTGTTCCGACGGTGATCGGAAGGACG
GGGTCGTGCAAGTGTGTGCTCTTCACTTTGGAGCGGGCCAAGATTGAGCG
ATATAGCCGACGCCATCCAAGTCAAGTTCCTGTCTTTTCTTCTGCGAATT
TTTCTCTCTGCAGGTTCTCATTGTTCTTGTTCTGTTATATTTCTACTCCG
TCGGTTTCCGTCGTGAGTGAAAAGCCGGGTTCATCTTTCGGCGTGCCCCC
GAACATGCACGGTTGTTCTGTATGTGTGTGGTATGTGGTATATTTGAGGC
TTCCGAGACGAAATGTATATGGAGTATGAAGGTGCTTCGTGTAGTGGTGG
ACGGCTGGCACGCGGGAGAGCTTGTTACAGTAGTTATATATTTCTTGTCT
CCCGCTGTTTGGTAATGCAGAGCTGTGTGCGTAATCGAGCTCGAAGTAAT
TGGACCAGAAACCGTGAAGGTTATGCTTGAGAATGTACTTCGTATGTAGT
ATGTCGCACCAGCAGCCATTCGGCTCTACTCCCGTG back to topCoding sequence (CDS) from alignment at C-linearis_contig96:444056..449491+ >mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous) ATGAGCGGGTCCAGCCTTTGGAGGGAGCGGCGGGCGGGCGTCACTGTTGC GGTCCTGTGTTGCATCGGTGCCGTCGCGTACGTCGGGGCTGCCAAGTGGA ACAGCAGACGGCCGACGAGACGGATGCTTGGGATGAGCGGGTCCAGCCTT TGGAGGGAGCGGCGGGCGGGCGTCACTGTTGCGGTCCTGTGTTGCATCGG TGCCGTCGCGTACGTCGGGGCTGCCAAGTGGAACAGCAGACGGCCGACGA GACGGATGCTTGGGAACATCGCTAGCGGGCGCGATTTCATCGACGCACTG TCGACAGGGGTGGCGGAGCTGGAGGCAAAGGTTTCCCTGGCCGCCGAGGG AACTGACCTGGAAACAGCTCGAGAAGAGAACATCGCTAGCGGGCGCGATT TCATCGACGCACTGTCGACAGGGGTGGCGGAGCTGGAGGCAAAGGTTTCC CTGGCCGCCGAGGGAACTGACCTGGAAACAGCTCGAGAAGAGCACGAGAG AAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACCCACCTCG ACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAAGCAGCAC GAGAGAAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACCCA CCTCGACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAAGC AGGTTCACCGAGCGGAGGCGTTGGGTGTTCGAATTAGCAAGATTCTCCCT GGGGGAACTGCCGAAGATTGAGTTCACCGAGCGGAGGCGTTGGGTGTTCG AATTAGCAAGATTCTCCCTGGGGGAACTGCCGAAGATTGA back to top
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