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Homology
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI) HSP 1 Score: 148 bits (374), Expect = 4.150e-41 Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 1 Query: 1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER 288
WV TKL QGHRSPIRRPARATMEWS+ TH+ RLRLWETLRG VGCVLQRGPSFAWLS+++ SKR R RL LSVPVLV EA LD LVRSDGI R
Sbjct: 265 WVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVLVLEAGLDHLVRSDGIAR 361
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.000e-31 Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 Query: 1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSV 228
WV TKL QGHRSPIRRPARA+MEWS+ TH+ RLRLWETLRG VGCVLQRGPSFAWLS+++ SKR R RL LSV
Sbjct: 115 WVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D7G484_ECTSI | 4.150e-41 | 77.32 | Lysophospholipase l2 pldb, hydrolase of alpha/beta... | [more] |
| A0A6H5KMI3_9PHAE | 2.000e-31 | 75.32 | Hydrolase_4 domain-containing protein n=1 Tax=Ecto... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 3 |
| Model size | 292 |
| Cds size | 288 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930822.9765263-CDS-C-linearis_contig96:196155..196187 | 1622930822.9765263-CDS-C-linearis_contig96:196155..196187 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 196156..196187 + |
| 1690881268.0232818-CDS-C-linearis_contig96:196155..196187 | 1690881268.0232818-CDS-C-linearis_contig96:196155..196187 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 196156..196187 + |
| 1622930822.9978635-CDS-C-linearis_contig96:196647..196840 | 1622930822.9978635-CDS-C-linearis_contig96:196647..196840 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 196648..196840 + |
| 1690881268.0331702-CDS-C-linearis_contig96:196647..196840 | 1690881268.0331702-CDS-C-linearis_contig96:196647..196840 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 196648..196840 + |
| 1622930823.0134206-CDS-C-linearis_contig96:197558..197621 | 1622930823.0134206-CDS-C-linearis_contig96:197558..197621 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 197559..197621 + |
| 1690881268.0425003-CDS-C-linearis_contig96:197558..197621 | 1690881268.0425003-CDS-C-linearis_contig96:197558..197621 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig96 197559..197621 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17033.1 >prot_C-linearis_contig96.17033.1 ID=prot_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
WVATKLAQGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQR
GPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER back to topmRNA from alignment at C-linearis_contig96:196156..197623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGGTGGGATACTCCGGGAAG
GTATTCTTTGGGTGTGCATCGGCGTTTATGTTTGAAACAGATCTTCATTC
GAGCTTGGCAGACTCCGGCACATTCGCGACCACACTAGCTGGGTTCGTTT
AGATGTGCTCACGACAACTTCCACAGGAAGAAAAGCGGAACTGGACGACA
TTGATGACAAAGTCTCGTGTGTTGCTCGTCTGGCTGCAGACACGCGTGGC
GGAAATTGATTGGTGCATTGGCACGCTCATTCATGGTTTCTCCTGCAGCT
GCTAGAAATATTGAGATCGTGGCGTGCATCACGTCGACCACCCTGACTTC
CTCACGGCGCATCATACACTACGGCAGCACCATGATCGCGCCTGCCTCTC
CGCTAGCTCATTTGCATTTGTCTCCCCCTGTGCCCGTCCGCCCACCCTAC
GGCTCGTCCCTTGCAAAATTTCACGGCGTGAAATGAGAGTAGGAGCCCAA
TCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCGAAGGCGACGCATGAA
ATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGGTGAGGTGGGCTGCGT
GCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTCAGGCCATCGGCACGT
CTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCGGTGAGCGTGCCGGAT
CGGCCAACGATTACGGTTGCGGCGCGATGCATGGATGTGGTACAGTGCAA
GGCATGGATTTGTTCAATGGCTCAGGGTTTAGGGGTGCTATTTAGCTCGG
TTTCTGTTGTTTCCTGCACTTCGTTGGGCTCTTGAACTATGATGGAATTG
GGGCGATCGATGTTGTTTCAAAGTATAAATGCTTTGTTTTCTGGTGAGCT
AAGTAAGGTGCCGTCGAGTAAAGGAAGGGACTGCAGTTGTGAAGGCACAA
CTCTTAGGCCCAAGGGCAACATCAAATTGTTTGATTTGAAGCGCAGCAGT
GCGTCGTGGTGTTACTGCTTGAGTGAGGTTGATGTGCGCCGTCGTCAACA
CTACTGTTTGCTCTTTTTTTTTGTGTGGCTGTGGCGCTTTTTGATGTGGC
ACGATGCTCGCTCAATCGCGAGATATCACCCGTGATGTGTCCGACGCTCT
TGACGCCCTTGACTGTGCTTGGCGTGTTTGGATTGTTTTTTCTCTCTCAA
TCTTTCCGAGTTGACTTACAATGCGCGCAGGTGCCCTTTTTGGCGCCGCT
CGGAGCAAAATTGAACCTTTCAGTAATCTGAGCCATAACTTTGATAATTC
ATTTTGTTTTTGGTCCTCCCTCTCCCGCCACTGCCCTACGCTGTTACTGT
ATGCCGCTATTGTTGACCTGTTGTTCTAACGACTTTTTCGGTTTCGTCTA
CAGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATC
CGACGGCATAGAGCGGTT back to topCoding sequence (CDS) from alignment at C-linearis_contig96:196156..197623+ >mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGTGGGTTGCAACCAAGCTC
GCCCAGGGACACAGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGA
GTGGTCGAAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCC
TCCGGGGTGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGG
CTGTCTCAGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGA
TCTGTCGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCG
AAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGG
TGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTC
AGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCG
GTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATCCGA
CGGCATAGAGCGGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGAT
TGGTACGATCCGACGGCATAGAGCGG back to top
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