mRNA_C-linearis_contig96.17033.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.150e-41
Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 1

Query:    1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER 288
            WV TKL  QGHRSPIRRPARATMEWS+ TH+  RLRLWETLRG VGCVLQRGPSFAWLS+++  SKR R RL  LSVPVLV EA LD LVRSDGI R
Sbjct:  265 WVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVLVLEAGLDHLVRSDGIAR 361

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BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.000e-31
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1

Query:    1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSV 228
            WV TKL  QGHRSPIRRPARA+MEWS+ TH+  RLRLWETLRG VGCVLQRGPSFAWLS+++  SKR R RL  LSV
Sbjct:  115 WVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 191

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot

BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G484_ECTSI	4.150e-41	77.32	Lysophospholipase l2 pldb, hydrolase of alpha/beta...	[more]
A0A6H5KMI3_9PHAE	2.000e-31	75.32	Hydrolase_4 domain-containing protein n=1 Tax=Ecto...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig96	contig	C-linearis_contig96:196156..197623 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig96:196156..197623+
coding sequence from alignment at C-linearis_contig96:196156..197623+

protein sequence of mRNA_C-linearis_contig96.17033.1

>prot_C-linearis_contig96.17033.1 ID=prot_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
WVATKLAQGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQR
GPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER

mRNA from alignment at C-linearis_contig96:196156..197623+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGGTGGGATACTCCGGGAAG
GTATTCTTTGGGTGTGCATCGGCGTTTATGTTTGAAACAGATCTTCATTC
GAGCTTGGCAGACTCCGGCACATTCGCGACCACACTAGCTGGGTTCGTTT
AGATGTGCTCACGACAACTTCCACAGGAAGAAAAGCGGAACTGGACGACA
TTGATGACAAAGTCTCGTGTGTTGCTCGTCTGGCTGCAGACACGCGTGGC
GGAAATTGATTGGTGCATTGGCACGCTCATTCATGGTTTCTCCTGCAGCT
GCTAGAAATATTGAGATCGTGGCGTGCATCACGTCGACCACCCTGACTTC
CTCACGGCGCATCATACACTACGGCAGCACCATGATCGCGCCTGCCTCTC
CGCTAGCTCATTTGCATTTGTCTCCCCCTGTGCCCGTCCGCCCACCCTAC
GGCTCGTCCCTTGCAAAATTTCACGGCGTGAAATGAGAGTAGGAGCCCAA
TCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCGAAGGCGACGCATGAA
ATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGGTGAGGTGGGCTGCGT
GCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTCAGGCCATCGGCACGT
CTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCGGTGAGCGTGCCGGAT
CGGCCAACGATTACGGTTGCGGCGCGATGCATGGATGTGGTACAGTGCAA
GGCATGGATTTGTTCAATGGCTCAGGGTTTAGGGGTGCTATTTAGCTCGG
TTTCTGTTGTTTCCTGCACTTCGTTGGGCTCTTGAACTATGATGGAATTG
GGGCGATCGATGTTGTTTCAAAGTATAAATGCTTTGTTTTCTGGTGAGCT
AAGTAAGGTGCCGTCGAGTAAAGGAAGGGACTGCAGTTGTGAAGGCACAA
CTCTTAGGCCCAAGGGCAACATCAAATTGTTTGATTTGAAGCGCAGCAGT
GCGTCGTGGTGTTACTGCTTGAGTGAGGTTGATGTGCGCCGTCGTCAACA
CTACTGTTTGCTCTTTTTTTTTGTGTGGCTGTGGCGCTTTTTGATGTGGC
ACGATGCTCGCTCAATCGCGAGATATCACCCGTGATGTGTCCGACGCTCT
TGACGCCCTTGACTGTGCTTGGCGTGTTTGGATTGTTTTTTCTCTCTCAA
TCTTTCCGAGTTGACTTACAATGCGCGCAGGTGCCCTTTTTGGCGCCGCT
CGGAGCAAAATTGAACCTTTCAGTAATCTGAGCCATAACTTTGATAATTC
ATTTTGTTTTTGGTCCTCCCTCTCCCGCCACTGCCCTACGCTGTTACTGT
ATGCCGCTATTGTTGACCTGTTGTTCTAACGACTTTTTCGGTTTCGTCTA
CAGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATC
CGACGGCATAGAGCGGTT

Coding sequence (CDS) from alignment at C-linearis_contig96:196156..197623+

>mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGTGGGTTGCAACCAAGCTC
GCCCAGGGACACAGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGA
GTGGTCGAAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCC
TCCGGGGTGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGG
CTGTCTCAGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGA
TCTGTCGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCG
AAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGG
TGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTC
AGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCG
GTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATCCGA
CGGCATAGAGCGGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGAT
TGGTACGATCCGACGGCATAGAGCGG