mRNA_C-linearis_contig96.17033.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI) HSP 1 Score: 148 bits (374), Expect = 4.150e-41 Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 1 Query: 1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER 288
WV TKL QGHRSPIRRPARATMEWS+ TH+ RLRLWETLRG VGCVLQRGPSFAWLS+++ SKR R RL LSVPVLV EA LD LVRSDGI R
Sbjct: 265 WVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVLVLEAGLDHLVRSDGIAR 361
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.000e-31 Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 Query: 1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSV 228
WV TKL QGHRSPIRRPARA+MEWS+ TH+ RLRLWETLRG VGCVLQRGPSFAWLS+++ SKR R RL LSV
Sbjct: 115 WVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 191 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17033.1 >prot_C-linearis_contig96.17033.1 ID=prot_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp WVATKLAQGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRback to top mRNA from alignment at C-linearis_contig96:196156..197623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:196156..197623+ >mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)back to top |