mRNA_C-linearis_contig96.17028.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig96.17028.1
Unique Name	mRNA_C-linearis_contig96.17028.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.590e-86
Identity = 142/214 (66.36%), Postives = 165/214 (77.10%), Query Frame = 1

Query:    1 PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
            PLLWSL  RQCQL SL+PVAGLLHHL+G++GL +H + GL LAGVERVLADARCL TLTI  C LA LPRLQSGSIE+LD+S+N +ESA+GLE LFRLKELNLAGN I TL+ LRPL+ LG G LREL+LD NPV+N P RYRESV  + PSIQLLDG+A ++ WR    T  NT G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:    4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVG-EEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAG 215

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 5.830e-83
Identity = 139/213 (65.26%), Postives = 164/213 (77.00%), Query Frame = 1

Query:    4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
            LLWSL  RQCQL SL+PVAGLLHHL+G++GL +H   GLALAG+ERVLADARCL TLTI  CGLA LPRLQSGSIE+LD S+N +ESA+GLE LFRL+ELNLAGN I TL+DLRPL+ LG G LREL+L+ NPV++ P RYRESV  + PSIQLLDG+A ++ WR    T  N  G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAG-EEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAG 299

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A0L0SBP9_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SBP9_ALLM3)

HSP 1 Score: 57.0 bits (136), Expect = 6.240e-6
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1

Query:    4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMG----LRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
            L+ SL +R CQL+++ P+A L H  E  +G     R+ ++A L L    RVL DA C +   +       +P      +  L+LS N+L S   +  L R+ EL LA N+++    +  L  L A  L  L L  N        YR  V   +P IQ+LDGVA+T
Sbjct:  576 LVTSLSLRNCQLTTVSPLADLAHLEELFIGGNRLTRIDDLAHLPL----RVL-DASCNAITAV------DVPARAFAKLTHLNLSSNRLTSLDMVRTLPRVTELYLAHNHVTDSGHMNALAVLPA--LHVLDLTGNAFIGAVPHYRAYVIYCVPLIQVLDGVAVT 727

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: R7VI33_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VI33_CAPTE)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1

Query:  136 ERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRT-------WRAGK 507
            E++L D R LS L              S S+++L+++ N+L+S   L  L  L + ++A N +S + +L   ++      R L L  NPV N  S+YR+ V  + PS+++LDG  IT T       W+A K
Sbjct:  135 EKLLFDPRSLSAL--------------SRSLQVLNVTGNRLDSLQDLFSLTELMQFSVADNQLSDIKELAHFLTSNRHLWR-LDLSGNPVCN-KSKYRDRVIIMSPSLEVLDGKEITDTARQFLTSWQANK 249

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00186483C2 (geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186483C2)

HSP 1 Score: 54.3 bits (129), Expect = 4.480e-5
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSI 459
            +E+L++ DN +E+  GL  L RL+EL+L  N IS L++L+PL S     L  L L  NPV   P+   E +A LLPS+
Sbjct:  503 LEVLEVDDNAIETLPGLYHLPRLEELSLRNNQISRLSELKPLSSCPK--LTRLDLRGNPVTQTPNLQSE-LAELLPSV 577

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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00106C733E (leucine-rich repeat and guanylate kinase domain-containing protein-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C733E)

HSP 1 Score: 53.9 bits (128), Expect = 6.480e-5
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1

Query:  226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
            +++LDLS N + S  GL+    L+E+NL GN I  + ++R +  L    LR+L+  RNP++ + S YR S+   L +++ LDGV +T
Sbjct:  245 LKVLDLSCNYIRSLKGLQEHEFLQEINLEGNQIIDIAEIRYIRELRL--LRKLNFQRNPIQEM-SDYRLSILFRLQTLKNLDGVDVT 328

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot

BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G481_ECTSI	3.590e-86	66.36	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5KR55_9PHAE	5.830e-83	65.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A0L0SBP9_ALLM3	6.240e-6	33.94	Uncharacterized protein n=2 Tax=Allomyces macrogyn...	[more]
R7VI33_CAPTE	1.150e-5	32.06	Uncharacterized protein n=1 Tax=Capitella teleta T...	[more]
UPI00186483C2	4.480e-5	43.59	geranylgeranyl transferase type-2 subunit alpha n=...	[more]
UPI00106C733E	6.480e-5	37.93	leucine-rich repeat and guanylate kinase domain-co...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig96	contig	C-linearis_contig96:150670..152018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	642
Cds size	642
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig96.17028.1	prot_C-linearis_contig96.17028.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig96 150670..152018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930821.8079183-CDS-C-linearis_contig96:150669..151088	1622930821.8079183-CDS-C-linearis_contig96:150669..151088	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 150670..151088 +
1690881267.3725138-CDS-C-linearis_contig96:150669..151088	1690881267.3725138-CDS-C-linearis_contig96:150669..151088	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 150670..151088 +
1622930821.8239658-CDS-C-linearis_contig96:151418..151526	1622930821.8239658-CDS-C-linearis_contig96:151418..151526	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 151419..151526 +
1690881267.3833306-CDS-C-linearis_contig96:151418..151526	1690881267.3833306-CDS-C-linearis_contig96:151418..151526	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 151419..151526 +
1622930821.8449256-CDS-C-linearis_contig96:151903..152018	1622930821.8449256-CDS-C-linearis_contig96:151903..152018	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 151904..152018 +
1690881267.3932526-CDS-C-linearis_contig96:151903..152018	1690881267.3932526-CDS-C-linearis_contig96:151903..152018	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 151904..152018 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig96:150670..152018+
coding sequence from alignment at C-linearis_contig96:150670..152018+

protein sequence of mRNA_C-linearis_contig96.17028.1

>prot_C-linearis_contig96.17028.1 ID=prot_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLA
DARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKE
LNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLL
PSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDG
YFSDGAACVSRRAG

mRNA from alignment at C-linearis_contig96:150670..152018+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1349bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTGTGGTCTTTGATCATCCGACAGTGCCAGCTATCCTCCCTTAT
CCCGGTCGCAGGGCTGCTGCACCATTTAGAAGGCATGATGGGGCTGCGAG
TTCACGAGGTAGCTGGGCTGGCGCTTGCGGGGGTGGAACGCGTGCTGGCC
GACGCACGGTGTCTAAGCACACTCACAATTTGCAAGTGCGGTCTGGCATA
CCTACCTCGTCTCCAGAGCGGATCAATCGAGATTCTTGACTTGAGCGACA
ACAAACTTGAAAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTAAAAGAG
CTGAATCTCGCGGGGAACAACATAAGCACGCTGACAGATCTAAGGCCATT
GATTTCGCTGGGAGCTGGCTGTCTTCGGGAGTTGAGCTTGGACAGGAACC
CTGTGAAAAATATCCCGAGGTACGAACATGGTAAAGGTTATCGTGTTGGT
CCCCGAGGTATGGAGGAGGTACTGCTGTAAGTCTTTGTGCACGGGAACAC
GAATTACGCAGATGTGACGTCCTATCAAGCGGTTAGGCGGCATGCGGGTA
GCTTGAGTTGCATCAGTCTTTACAATCTCACGTTGGGCTCGTAGCTTTTC
TGATTGGCAACCAAACCCCACGCCTGAGGGTGTCGTTGCTGGGGTAGGTA
AGCGTTCTCCACCACTCCCTCTTCCTCCCCCAAACCTACTCGGCAGCATA
CTTGTTAACGCCTACTCCGTACACCCGTTTGTATTGCTTCTTATCTGAGC
AGATATAGGGAATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGA
CGGGGTCGCCATAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATA
ATACCACGTGAGAGCACCTTGCCCTCGAAAGAATTTCTTGTTTCATGCCA
CAAGCAGTCTGCATGCTTGCGATGTTTGCACTTCGACGTCAGTAAGTGGG
ATGAGCGAGTTGGATCGTGATTCTCTTTGATGAAGTGTATAGCAAACTTG
GTGCTCGGCACAACTAGCCTAGTTCTTCATTGGCTTGTCTACCACCAACG
GCCGAATACACGTCCACCCGATAGTATTCGGTGCCACCGTTCACAGCATC
AAGTAGCTGCTCAAGAGGGAGCCGTCCTCTGAGAGCATGGGAGGGGCAGG
GACCCTATTTGACCTTTGGAGCAGACTTTCCGTGGAGATACGAAACCATC
CCACTCAACACAACCACGTCCAACCAATTATCAGGGGAGGCAAACGAGGT
TGCACTATACTTGAGTGCACTACACGGCCGAGGGTTAGGGATGGGCCTGT
CGACGGATACTTTAGCGACGGTGCGGCTTGCGTATCGAGACGAGCAGGT

Coding sequence (CDS) from alignment at C-linearis_contig96:150670..152018+

>mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTGTGGTCTTTGATCATCCGACAGTGCCAGCTATCCTCCCTTAT
CCCGGTCGCAGGGCTGCTGCACCATTTAGAAGGCATGATGGGGCTGCGAG
TTCACGAGGTAGCTGGGCTGGCGCTTGCGGGGGTGGAACGCGTGCTGGCC
GACGCACGGTGTCTAAGCACACTCACAATTTGCAAGTGCGGTCTGGCATA
CCTACCTCGTCTCCAGAGCGGATCAATCGAGATTCTTGACTTGAGCGACA
ACAAACTTGAAAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTAAAAGAG
CTGAATCTCGCGGGGAACAACATAAGCACGCTGACAGATCTAAGGCCATT
GATTTCGCTGGGAGCTGGCTGTCTTCGGGAGTTGAGCTTGGACAGGAACC
CTGTGAAAAATATCCCGAGCCGCTGTTGTGGTCTTTGATCATCCGACAGT
GCCAGCTATCCTCCCTTATCCCGGTCGCAGGGCTGCTGCACCATTTAGAA
GGCATGATGGGGCTGCGAGTTCACGAGGTAGCTGGGCTGGCGCTTGCGGG
GGTGGAACGCGTGCTGGCCGACGCACGGTGTCTAAGCACACTCACAATTT
GCAAGTGCGGTCTGGCATACCTACCTCGTCTCCAGAGCGGATCAATCGAG
ATTCTTGACTTGAGCGACAACAAACTTGAAAGTGCCAGCGGGCTGGAGAT
GCTATTTCGCCTAAAAGAGCTGAATCTCGCGGGGAACAACATAAGCACGC
TGACAGATCTAAGGCCATTGATTTCGCTGGGAGCTGGCTGTCTTCGGGAG
TTGAGCTTGGACAGGAACCCTGTGAAAAATATCCCGAGCAGATATAGGGA
ATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGACGGGGTCGCCA
TAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATAATACCACCAGA
TATAGGGAATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGACGG
GGTCGCCATAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATAATA
CCACGGGAGGCAAACGAGGTTGCACTATACTTGAGTGCACTACACGGCCG
AGGGTTAGGGATGGGCCTGTCGACGGATACTTTAGCGACGGTGCGGCTTG
CGTATCGAGACGAGCAGGTGGGAGGCAAACGAGGTTGCACTATACTTGAG
TGCACTACACGGCCGAGGGTTAGGGATGGGCCTGTCGACGGATACTTTAG
CGACGGTGCGGCTTGCGTATCGAGACGAGCAGGT