mRNA_C-linearis_contig96.17020.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: D7G477_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G477_ECTSI) HSP 1 Score: 473 bits (1218), Expect = 1.030e-160 Identity = 313/491 (63.75%), Postives = 351/491 (71.49%), Query Frame = 1 Query: 1 EHTKYKEMFQKLTT-DGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLPELPKRTSENKLKKARTRHPPAAAVKPKGAERIKGQIEPAKLSKRRSRLASLVES-PDGDGPRTAIPESNESAIEEERIQGPVNEKRETPAGG---MIVGNGAIRAPDEYFQTSQTSAVESRDHGAPDRKRRPNLRQLDAKDVDAVFAEDLGAINSLRDVQSWRVLVMGLQRLSAKDMSRRVQVKARPQRRHTLPLATKGELVHKQEFLPGRGRRISLFGTAYDPAALFLKKRAERGSTREVELEKDVAKAAAKWNLKPLVESAHRGANGATDAERGDGSRGNLSVAGLPLLDEDIDVIAHLLRQNHAFNKLDLSRCFLSETQFVSLAQALAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGCKGLDEKGIRQILTAARKKANLLKFNGMELATLRAESSDELDLSG 1458
EH +Y ++F+KL T DGYL G+RAV LL KSG+ Q+TL++VWALAD D DGRLS+KEFC AMHLIGC RKG PLPE+P R K KK + R P KP+ + K +I AK KRRSRLASLV+ D + P +I +S+E + RI+ T G MI R E Q + A ESRDHG R RRPNLRQLD KDVDAVFAE GAINSLRDVQSWRVLVMGLQRLS KDM+R V RP+RRHTLPLA KG+L KQ++LPGRGRR SL GTAY+PAALFLK+RAER S RE +LEKD AKAA KWNLKPL E + R + D E+ SRGNLSVAGLPLLDED+D+I HLLRQNHAF +LDLSRCFLSE QFVSLAQALAW XXXXXXXXXXXXXXXXXXXXXXXX RGCKGLDEK I+ IL AR K NLL FNGM LA LRAE SDELDLSG
Sbjct: 16 EH-RYAKIFEKLDTEDGYLSGKRAVVLLRKSGVPQETLSKVWALADSDVDGRLSLKEFCTAMHLIGCFRKGLPLPEVPSR----KPKKPKKRQSPGGDTKPREGQG-KREITFAKSPKRRSRLASLVDPHQDANPPGASIAKSHEPLLPLSRIRKSATLWILTLCGSRSPMITSQWKSRRLKELRQ-HRKEAEESRDHGGQSRIRRPNLRQLDDKDVDAVFAEGPGAINSLRDVQSWRVLVMGLQRLSGKDMARHVPTNVRPRRRHTLPLAAKGDLARKQDYLPGRGRRTSLLGTAYEPAALFLKQRAERRSIREADLEKDTAKAAEKWNLKPLREKSERCES---DGEQ-TSSRGNLSVAGLPLLDEDVDIIVHLLRQNHAFKRLDLSRCFLSEKQFVSLAQALAWNSRIEELFXXXXXXXXXXXXXXXXXXXXXXXXHSLDVRGCKGLDEKSIKVILGGARSKGNLLTFNGMNLADLRAEGSDELDLSG 495
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A8J5X7G7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X7G7_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 1.290e-9 Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 1 EHTKYKEMFQKLTT--DGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLP 222
E +Y F L T G+L G +A LL KSGL ++TL+R+W L+D D DGRLS +EF AAMHL +G PLP
Sbjct: 171 EAARYDAYFASLDTARTGFLSGAQAAPLLSKSGLPKETLSRIWGLSDADRDGRLSQREFRAAMHLAMRTARGTPLP 246
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A443SJD9_9ACAR (Intersectin-2-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SJD9_9ACAR) HSP 1 Score: 64.7 bits (156), Expect = 6.090e-9 Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 Query: 1 EHTKYKEMFQKLT-TDGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKG 210
+ +KY+ F +L +G + G++A L +SGL LA++W LAD DADGR+ V EFC A+HLI KG
Sbjct: 14 QKSKYESQFMRLQPVNGLITGDQAKGLFLQSGLPPSVLAKIWELADVDADGRMDVNEFCIALHLIALKLKG 84
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A443RH56_9ACAR (Intersectin-2-like isoform X13 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443RH56_9ACAR) HSP 1 Score: 67.4 bits (163), Expect = 4.610e-8 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 1 EHTKYKEMFQKLTT-DGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKG 210
+ +KY+ F +L +G + GE+A L KSGL Q LA++W LAD DADGR+ V EFC A+HLI KG
Sbjct: 15 QKSKYESQFFRLQPINGLITGEQAKGLFLKSGLPPQILAKIWELADVDADGRMDVNEFCIALHLIALKLKG 85
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: UPI0006D51980 (intersectin-1 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D51980) HSP 1 Score: 67.0 bits (162), Expect = 6.110e-8 Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 10 KYKEMFQKLTTD----GYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLP 222
KY ++F TTD GYL G +A ++L S L Q LA++WALAD DADGRLS +EF A+HL R GE LP
Sbjct: 394 KYTQLFN--TTDKARSGYLTGPQARTILLASKLPQPVLAQIWALADTDADGRLSCEEFVLALHLCDLARAGETLP 466
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A1I7X785_HETBA (Uncharacterized protein n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7X785_HETBA) HSP 1 Score: 66.6 bits (161), Expect = 7.460e-8 Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 10 KYKEMFQKLTTD--GYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLPE 225
+Y + F +L G+L G S +G SGL TLA +W+L+D + DGRLSV EFC AMHLI + G LP+
Sbjct: 176 RYSQQFNQLDKQRMGFLSGSAGRSAMGMSGLPTPTLAHIWSLSDVNKDGRLSVDEFCIAMHLIDMCKAGFALPD 249
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A0N5AWI9_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AWI9_9BILA) HSP 1 Score: 65.9 bits (159), Expect = 1.370e-7 Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1 Query: 1 EHTKYKEMFQKLTTD--GYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLPE 225
E KY++ F +L G L G A ++L +S L TLA VW L+D + DGRLSV+EFC AMHLI V+ G LP+
Sbjct: 191 EKLKYRQQFNQLDKQRTGALNGIHARNVLAQSQLPNVTLAEVWNLSDVNKDGRLSVEEFCIAMHLIDSVKSGYLLPK 267
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A074XA01_AURPU (Uncharacterized protein n=43 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A074XA01_AURPU) HSP 1 Score: 65.5 bits (158), Expect = 1.770e-7 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 Query: 7 TKYKEMFQKLTTDGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVR 204
T+Y ++++ GYL GE+A ++ ++GL +TL R+W LAD + G L EFC AMHLI C +
Sbjct: 144 TQYANLYEQSAGGGYLSGEQAKAIFERAGLPNETLGRIWQLADREGKGSLDKTEFCIAMHLITCYK 209
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A183GVI4_HELPZ (Uncharacterized protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GVI4_HELPZ) HSP 1 Score: 62.4 bits (150), Expect = 1.940e-7 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 46 GYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLPE 225
G+L G+ S LG SGL LA +W L+D + DG+L+V EFC AMHLI V+ G LP+
Sbjct: 96 GFLTGQAGRSALGMSGLPTTALAHIWTLSDVNKDGKLTVDEFCIAMHLIDMVKAGYALPD 155
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Match: A0A0M8N146_9HYPO (Putative calcium-binding protein n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8N146_9HYPO) HSP 1 Score: 65.1 bits (157), Expect = 2.250e-7 Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 10 KYKEMFQKLTTDG-YLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFCAAMHLIGCVRKGEPLPELPKRTSENKLKKARTRHPPAAAV 294
+Y +F++ G YL GE+A S+ KSGL+ +TL R+W LAD D G L++ EF AMHL+ + G L LP L +A +R PPAAA
Sbjct: 143 QYSSLFERQNLQGGYLPGEQARSIFDKSGLANETLGRIWGLADTDQRGALALPEFIIAMHLLTSTKTGS-LRALPNVLPPG-LYEAASRAPPAAAA 236 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17020.1 >prot_C-linearis_contig96.17020.1 ID=prot_C-linearis_contig96.17020.1|Name=mRNA_C-linearis_contig96.17020.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=480bp MFQKLTTDGYLGGERAVSLLGKSGLSQQTLARVWALADGDADGRLSVKEFback to top mRNA from alignment at C-linearis_contig96:87776..91190- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17020.1 ID=mRNA_C-linearis_contig96.17020.1|Name=mRNA_C-linearis_contig96.17020.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3415bp|location=Sequence derived from alignment at C-linearis_contig96:87776..91190- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:87776..91190- >mRNA_C-linearis_contig96.17020.1 ID=mRNA_C-linearis_contig96.17020.1|Name=mRNA_C-linearis_contig96.17020.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2880bp|location=Sequence derived from alignment at C-linearis_contig96:87776..91190- (Chordaria linearis ClinC8C monoicous)back to top |