Homology
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match:
D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)
HSP 1 Score: 209 bits (533), Expect = 2.260e-53
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 3
Query: 543 RRGLSRTCESLSLPDVGLHHKFRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRN-GRWAWVLKKNEQAHCRENGDAASAQSARPPIS 1199
R G R ++LS ++G H KFR+ FLC H L EVPCGP G G+PI+ KDWVKQ PL++ SLW+LRVAVG VSNVDLPLN+VL A V ATGA +L+G+G +VP+ + +P+F+EGAT + FKDL+G +Y+ LC FM++ E S P+ LSGCLPC R + V+W+D MVQVR+ + GR AWVLK NE+A RE+G A + A P+S
Sbjct: 960 RAGWDRWTKALS--EMGFH-KFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDVESSPPQCLSGCLPCHRTLAV-------VDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGGAPATAGA--PVS 1166
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match:
D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)
HSP 1 Score: 113 bits (283), Expect = 4.820e-22
Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 3
Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
F L FLCE E+PCGP G G+ + PL++ +LW++++AVGTV++VDLPL+ VL+A + AT A VL+ ++ SA D EG Q++ FK+L G AYK LCDFM + E R CLP RP + +W+ M +++ G ++WV K +EQ
Sbjct: 1963 FVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMTKEEFGPEEARCESCLPWYRPRVH-EPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match:
A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)
HSP 1 Score: 106 bits (265), Expect = 3.060e-20
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 3
Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
F L LCE E+PCGP G G+ + PL++ +LW++++AVGTV++V LPL+ VL+A + AT A VL+ ++ SA D EG Q++ FK+L G AYK LCDFM++ E + CLP RP L+ +W+ M ++++ G ++WV K +EQ
Sbjct: 494 FVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHRPRVHEPILS-EFDWRSHMYKIKNGVG-YSWVRKSSEQ 660
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match:
A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)
HSP 1 Score: 72.8 bits (177), Expect = 1.860e-9
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 3
Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIE--QLKDWVKQCAPLVKASLWILRVAVGTVSNVD-LPLNQVLDAAVKATG---AVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAE 983
+R+RFLC + L CG DGLGY +E ++W+K C P++K SLW+LRV + V+ D LP++ V++ + G A +L + E S+ D V++ + + GTAY L ++Q+ E
Sbjct: 954 YRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQD---------LVDKVNAQEQVFGTAYAELAKWVQQRE 1076
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 2.26e-53 / Id = 52.73 Expect = 4.82e-22 / Id = 37.99 Expect = 3.06e-20 / Id = 36.87 Expect = 1.86e-9 / Id = 33.33 Sequence D8LKS5_ECTSI D8LK68_ECTSI A0A6H5JR01_9PHAE A0A6H5JPJ1_9PHAE
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 2102
Cds size 363
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930819.6925898-UTR-C-linearis_contig96:26738..27638 1622930819.6925898-UTR-C-linearis_contig96:26738..27638 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 26739..27638 -
1690881266.3011076-UTR-C-linearis_contig96:26738..27638 1690881266.3011076-UTR-C-linearis_contig96:26738..27638 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 26739..27638 -
1622930819.7223902-UTR-C-linearis_contig96:28001..28115 1622930819.7223902-UTR-C-linearis_contig96:28001..28115 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28002..28115 -
1690881266.322018-UTR-C-linearis_contig96:28001..28115 1690881266.322018-UTR-C-linearis_contig96:28001..28115 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28002..28115 -
1622930819.7359967-UTR-C-linearis_contig96:28326..28507 1622930819.7359967-UTR-C-linearis_contig96:28326..28507 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28327..28507 -
1690881266.3336701-UTR-C-linearis_contig96:28326..28507 1690881266.3336701-UTR-C-linearis_contig96:28326..28507 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28327..28507 -
1622930819.7522614-UTR-C-linearis_contig96:28659..29203 1622930819.7522614-UTR-C-linearis_contig96:28659..29203 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28660..29203 -
1690881266.3437793-UTR-C-linearis_contig96:28659..29203 1690881266.3437793-UTR-C-linearis_contig96:28659..29203 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 28660..29203 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930819.7085972-CDS-C-linearis_contig96:27638..28001 1622930819.7085972-CDS-C-linearis_contig96:27638..28001 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 27639..28001 -
1690881266.311787-CDS-C-linearis_contig96:27638..28001 1690881266.311787-CDS-C-linearis_contig96:27638..28001 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 27639..28001 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17013.1
>prot_C-linearis_contig96.17013.1 ID=prot_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPS TPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ AHCRENGDAASAQSARPPIS* back to top mRNA from alignment at C-linearis_contig96:26739..29203-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2465bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)GCTCAAAAATTTCAAAACTTGAGAAATTTGGAGGTGAGAAAGAAGGCTCA
GCGGCCGGCGGCAGACTAAATCCTATATGATGGCTAGAGATGGCCATGCT
CAATGCTGGCGACACAACAAGAAACCTAGCCTCGGCCGAGATATCAGTGT
CTTATGAGCGGGCCGATACTGTACAGGTCGAATTTGTCAGAACTCCGTTA
TTTAGTGGTTGGTTGTGGGACGTCGGATAAGTTCAAAACACGATGGAATT
CCAATTTTCAGTTTGAAAAGTGGTGTAGTATCCGGGAACAAAATATCCAC
TAATCCGACTCCACATCGGTCTGATCAGGGTAGTTCTGGTCGTCACCCCA
GAAGTCGTCGTCGGACCAGTCGTGATAGCGCCTGGGCGCGTCACTGGCCA
TCAAAGAGCGGGGGCTCGGGGGCTTAGCCTCCTCGGTGCCGCCCGTATCC
TCCGACTCCGTGGTCTCGGGCATGGCCTCCTCCTCCACCACCACGCATGG
GGCAGCGGCCTCTTCGTCGGCGCCGCCCGTACCCTGCTTTTGAG GTTAGG
CGTTTGAGGTTGGGCATTTCAGGTGAGGCCTTCAGATTGGGTTTCCAGGT
GGGGTTTTCAAGTTGGGCGCACGCTTTGCGTGACAAAGCGCCGTTGCTCA
CTATCCCGCCTACGAGCTAGTAGCTGGACGACTTACTTTGTTGAAGGCGG
GGCTTGTCTCGAACCTGCGAAAGCTTGAGTCTGCCCGATGTCGGGTTGCA
CCACAAGTTTCGCCTCCGTTTCCTTTGTGAGCACAGCCTCGAAGAAGTAC
CATGTGGCCCCGACGGGCTTGGGTACCCTATCGAGCAGCTGAAGGATTGG
GTCAAGCAGTGCGCCCCTTTGGTGAAG GTGAGTTTTGGCATGGACCTGGT
AGGTCTTCTTGCTCGCTTGGTTTGTTTCGTTTCTCTCTGGTGCTCCTTGA
GCCCATACCGCGCATTTGTTGGCTCTTCGTTTACGTTCGTGGTAATGCCT
GGCGTCGCAGGGGCTTGTGCTAGAGCGATTGCCTCACGTTGTTCCCTATC
GTCGCCTTTATGTTCGTGCTCGCTTGCGTTTTCCTTAGGCGTCGTTGTGG
ATCTTGCGGGTGGCAGTTGGCACCGTGTCAAATGTGGACCTGCCCCTGAA
CCAAGTGCTGGATGCTGCTGTGAAAGCAACCGGTGCAGTAGTGCTGGACG
GG ATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATG
TTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCA
GGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGT
CAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACC
CGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCA
AGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGC
AGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGA
CCTCCGATCTCATGA TAAAAATGAGATTGGATGAATCAGGTGATCTCTAT
AGTGGTATTATTTGCGGTCAGATTCCGCCTTGCAGGGGAAGACCGGTGCC
GGTAGGGGGAAGCGGAGAAGTTTCCGCCACGAACGGGTGCACTGTAGATT
GTCATTTTGCGAGATGAACTGGCTAGGGCCGTTGCTTGAAAGGTGAAAGA
GGGCGTCCGCTGTCTTGTAGGATGACATTTCTAGTGCTCGGTGTTGTAGT
TGCAGGGAGGTGTCGGCATAACAAGTCACCGAGGAATCTCACTTTCTTTT
TTTTTGTTTTGTACTGACTTTCGGCTGTCACAGTTTCGATTCTGCTTGAG
CAGATATGTGAGGATTCGAGGAGGGCGTTGGTGGGCGTGCTTCGGTGGTA
GCAGGTTGAGCGAGTGCTACTGTGCCTCTTCAGGTTGTTGATAGTTTTCT
TGAGACCTAAGAAAGGTCGTGGACAGGCTGGTTTTCCTTGAAAACGTCCT
TGTCGGCGCGGTTATTCCCCTCGCGGATCTCTAGGATTCTCTTTGTTCCG
AGTTCTGGAACTTCTGTGAGAAATGTCAGTTTTTACATGGGCGTGGGTTT
AGCCAGGTAGACAAAAGTTCGAACAGAAAGGCGTGCTTTGCTACCCAATT
TGAGTGTCGAACCCGGCCCAACTCCCGAGGCGAGTGCCTGGATGTCACGC
CTCACCGAGACAAAAGTACAGGTTGTTGTCACGCGCTGAGCGTTAGCTAC
CGTCAAGCTTTGTCCGAGGAGCGCTTCATGCAAGCTGTGGAGAAACTCTC
CCGACGTTGTGGATCGTGGCGCAGCTACTCAAGAGATCGTCTATGTCTGC
AATTGGATCCGCAGGAACCACCGAGCCATTGACGACGATGACACAACCAT
TCAGCGGAAGACAAC back to top Coding sequence (CDS) from alignment at C-linearis_contig96:26739..29203-
>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous) ATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATGTT TGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCAGG GCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGTCA ACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACCCG ACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCAAG TGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGCAG GCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGACC TCCGATCTCATGAATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATC CGGTCCCGATGTTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTT AAAGATCTGCAGGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGA AGCCGAGCCGTCAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTC GCCCAATCACCCGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGAT AGTATGGTTCAAGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAA AAAGAACGAGCAGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGC AATCGGCTCGACCTCCGATCTCATGA back to top