mRNA_C-linearis_contig96.17013.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.260e-53
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 3

Query:  543 RRGLSRTCESLSLPDVGLHHKFRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRN-GRWAWVLKKNEQAHCRENGDAASAQSARPPIS 1199
            R G  R  ++LS  ++G H KFR+ FLC H L EVPCGP G G+PI+  KDWVKQ  PL++ SLW+LRVAVG VSNVDLPLN+VL A V ATGA +L+G+G +VP+   +  +P+F+EGAT  +   FKDL+G +Y+ LC FM++ E S P+ LSGCLPC R +         V+W+D MVQVR+ + GR AWVLK NE+A  RE+G A +   A  P+S
Sbjct:  960 RAGWDRWTKALS--EMGFH-KFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDVESSPPQCLSGCLPCHRTLAV-------VDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGGAPATAGA--PVS 1166

[Close]

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.820e-22
Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 3

Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
            F L FLCE    E+PCGP G G+ +           PL++ +LW++++AVGTV++VDLPL+ VL+A + AT A VL+   ++   SA  D      EG    Q++ FK+L G AYK LCDFM + E      R   CLP  RP      +    +W+  M  +++  G ++WV K +EQ
Sbjct: 1963 FVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMTKEEFGPEEARCESCLPWYRPRVH-EPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129

[Close]

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.060e-20
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 3

Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
            F L  LCE    E+PCGP G G+ +           PL++ +LW++++AVGTV++V LPL+ VL+A + AT A VL+   ++   SA  D      EG    Q++ FK+L G AYK LCDFM++ E      +   CLP  RP      L+   +W+  M ++++  G ++WV K +EQ
Sbjct:  494 FVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHRPRVHEPILS-EFDWRSHMYKIKNGVG-YSWVRKSSEQ 660

[Close]

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.860e-9
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 3

Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIE--QLKDWVKQCAPLVKASLWILRVAVGTVSNVD-LPLNQVLDAAVKATG---AVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAE 983
            +R+RFLC + L    CG DGLGY +E    ++W+K C P++K SLW+LRV +  V+  D LP++ V++   +  G   A +L  +  E   S+  D          V++    + + GTAY  L  ++Q+ E
Sbjct:  954 YRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQD---------LVDKVNAQEQVFGTAYAELAKWVQQRE 1076

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot

BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LKS5_ECTSI	2.260e-53	52.73	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LK68_ECTSI	4.820e-22	37.99	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5JR01_9PHAE	3.060e-20	36.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPJ1_9PHAE	1.860e-9	33.33	Roc domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	2102
Cds size	363
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig96.17013.1	prot_C-linearis_contig96.17013.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig96 27639..28001 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930819.6925898-UTR-C-linearis_contig96:26738..27638	1622930819.6925898-UTR-C-linearis_contig96:26738..27638	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 26739..27638 -
1690881266.3011076-UTR-C-linearis_contig96:26738..27638	1690881266.3011076-UTR-C-linearis_contig96:26738..27638	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 26739..27638 -
1622930819.7223902-UTR-C-linearis_contig96:28001..28115	1622930819.7223902-UTR-C-linearis_contig96:28001..28115	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28002..28115 -
1690881266.322018-UTR-C-linearis_contig96:28001..28115	1690881266.322018-UTR-C-linearis_contig96:28001..28115	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28002..28115 -
1622930819.7359967-UTR-C-linearis_contig96:28326..28507	1622930819.7359967-UTR-C-linearis_contig96:28326..28507	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28327..28507 -
1690881266.3336701-UTR-C-linearis_contig96:28326..28507	1690881266.3336701-UTR-C-linearis_contig96:28326..28507	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28327..28507 -
1622930819.7522614-UTR-C-linearis_contig96:28659..29203	1622930819.7522614-UTR-C-linearis_contig96:28659..29203	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28660..29203 -
1690881266.3437793-UTR-C-linearis_contig96:28659..29203	1690881266.3437793-UTR-C-linearis_contig96:28659..29203	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig96 28660..29203 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930819.7085972-CDS-C-linearis_contig96:27638..28001	1622930819.7085972-CDS-C-linearis_contig96:27638..28001	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 27639..28001 -
1690881266.311787-CDS-C-linearis_contig96:27638..28001	1690881266.311787-CDS-C-linearis_contig96:27638..28001	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig96 27639..28001 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig96:26739..29203-
coding sequence from alignment at C-linearis_contig96:26739..29203-

protein sequence of mRNA_C-linearis_contig96.17013.1

>prot_C-linearis_contig96.17013.1 ID=prot_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPS
TPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ
AHCRENGDAASAQSARPPIS*

mRNA from alignment at C-linearis_contig96:26739..29203-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2465bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)
GCTCAAAAATTTCAAAACTTGAGAAATTTGGAGGTGAGAAAGAAGGCTCA
GCGGCCGGCGGCAGACTAAATCCTATATGATGGCTAGAGATGGCCATGCT
CAATGCTGGCGACACAACAAGAAACCTAGCCTCGGCCGAGATATCAGTGT
CTTATGAGCGGGCCGATACTGTACAGGTCGAATTTGTCAGAACTCCGTTA
TTTAGTGGTTGGTTGTGGGACGTCGGATAAGTTCAAAACACGATGGAATT
CCAATTTTCAGTTTGAAAAGTGGTGTAGTATCCGGGAACAAAATATCCAC
TAATCCGACTCCACATCGGTCTGATCAGGGTAGTTCTGGTCGTCACCCCA
GAAGTCGTCGTCGGACCAGTCGTGATAGCGCCTGGGCGCGTCACTGGCCA
TCAAAGAGCGGGGGCTCGGGGGCTTAGCCTCCTCGGTGCCGCCCGTATCC
TCCGACTCCGTGGTCTCGGGCATGGCCTCCTCCTCCACCACCACGCATGG
GGCAGCGGCCTCTTCGTCGGCGCCGCCCGTACCCTGCTTTTGAGGTTAGG
CGTTTGAGGTTGGGCATTTCAGGTGAGGCCTTCAGATTGGGTTTCCAGGT
GGGGTTTTCAAGTTGGGCGCACGCTTTGCGTGACAAAGCGCCGTTGCTCA
CTATCCCGCCTACGAGCTAGTAGCTGGACGACTTACTTTGTTGAAGGCGG
GGCTTGTCTCGAACCTGCGAAAGCTTGAGTCTGCCCGATGTCGGGTTGCA
CCACAAGTTTCGCCTCCGTTTCCTTTGTGAGCACAGCCTCGAAGAAGTAC
CATGTGGCCCCGACGGGCTTGGGTACCCTATCGAGCAGCTGAAGGATTGG
GTCAAGCAGTGCGCCCCTTTGGTGAAGGTGAGTTTTGGCATGGACCTGGT
AGGTCTTCTTGCTCGCTTGGTTTGTTTCGTTTCTCTCTGGTGCTCCTTGA
GCCCATACCGCGCATTTGTTGGCTCTTCGTTTACGTTCGTGGTAATGCCT
GGCGTCGCAGGGGCTTGTGCTAGAGCGATTGCCTCACGTTGTTCCCTATC
GTCGCCTTTATGTTCGTGCTCGCTTGCGTTTTCCTTAGGCGTCGTTGTGG
ATCTTGCGGGTGGCAGTTGGCACCGTGTCAAATGTGGACCTGCCCCTGAA
CCAAGTGCTGGATGCTGCTGTGAAAGCAACCGGTGCAGTAGTGCTGGACG
GGATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATG
TTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCA
GGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGT
CAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACC
CGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCA
AGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGC
AGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGA
CCTCCGATCTCATGATAAAAATGAGATTGGATGAATCAGGTGATCTCTAT
AGTGGTATTATTTGCGGTCAGATTCCGCCTTGCAGGGGAAGACCGGTGCC
GGTAGGGGGAAGCGGAGAAGTTTCCGCCACGAACGGGTGCACTGTAGATT
GTCATTTTGCGAGATGAACTGGCTAGGGCCGTTGCTTGAAAGGTGAAAGA
GGGCGTCCGCTGTCTTGTAGGATGACATTTCTAGTGCTCGGTGTTGTAGT
TGCAGGGAGGTGTCGGCATAACAAGTCACCGAGGAATCTCACTTTCTTTT
TTTTTGTTTTGTACTGACTTTCGGCTGTCACAGTTTCGATTCTGCTTGAG
CAGATATGTGAGGATTCGAGGAGGGCGTTGGTGGGCGTGCTTCGGTGGTA
GCAGGTTGAGCGAGTGCTACTGTGCCTCTTCAGGTTGTTGATAGTTTTCT
TGAGACCTAAGAAAGGTCGTGGACAGGCTGGTTTTCCTTGAAAACGTCCT
TGTCGGCGCGGTTATTCCCCTCGCGGATCTCTAGGATTCTCTTTGTTCCG
AGTTCTGGAACTTCTGTGAGAAATGTCAGTTTTTACATGGGCGTGGGTTT
AGCCAGGTAGACAAAAGTTCGAACAGAAAGGCGTGCTTTGCTACCCAATT
TGAGTGTCGAACCCGGCCCAACTCCCGAGGCGAGTGCCTGGATGTCACGC
CTCACCGAGACAAAAGTACAGGTTGTTGTCACGCGCTGAGCGTTAGCTAC
CGTCAAGCTTTGTCCGAGGAGCGCTTCATGCAAGCTGTGGAGAAACTCTC
CCGACGTTGTGGATCGTGGCGCAGCTACTCAAGAGATCGTCTATGTCTGC
AATTGGATCCGCAGGAACCACCGAGCCATTGACGACGATGACACAACCAT
TCAGCGGAAGACAAC

Coding sequence (CDS) from alignment at C-linearis_contig96:26739..29203-

>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)
ATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATGTT
TGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCAGG
GCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGTCA
ACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACCCG
ACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCAAG
TGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGCAG
GCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGACC
TCCGATCTCATGAATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATC
CGGTCCCGATGTTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTT
AAAGATCTGCAGGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGA
AGCCGAGCCGTCAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTC
GCCCAATCACCCGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGAT
AGTATGGTTCAAGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAA
AAAGAACGAGCAGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGC
AATCGGCTCGACCTCCGATCTCATGA