Homology
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match:
D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)
HSP 1 Score: 100 bits (249), Expect = 4.010e-18
Identity = 69/192 (35.94%), Postives = 87/192 (45.31%), Query Frame = 1
Query: 1519 KQVTNMGKVLSDRDGARLCSNHQELHISQNIRDLGKNAAIHAVRGVGCWVLPCDPSRCTLTTVSTHSFR*NTTLSTLLLTRSGFPFVVLVRGGMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASGGREVGKI 2091
++ ++ +L D+ G RLCSNHQ LH ++N D G+ + DCHAGESR KSFKS KTAS RDNE HI+RREND MAA+AM G WTA Y+K + T++AS C E LR +SE I RR GR G +
Sbjct: 731 REKVSLMSMLGDKHGGRLCSNHQGLHFAKNATDYGE----------------------------------------------------------LSDCHAGESRHKSFKSCAKTASGRDNEEHIVRRENDAMAAEAMAEGVRWTAWGYDKTKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIV 864
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match:
D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)
HSP 1 Score: 89.4 bits (220), Expect = 1.080e-14
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query: 1032 GGFSAQTGMDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNE-----DVLRELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKV 1316
GGFSA +GMDVW L VA LVFRPVL SVASMKRL T F ++R L A T+ +V+ +LR+LL A+S AT +R+ SF++ + +++ +QR+K
Sbjct: 343 GGFSALSGMDVWTLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSEATHLLRSSSFNDETVASIDRSQREKT 442
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match:
A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)
HSP 1 Score: 60.5 bits (145), Expect = 1.090e-5
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 1795 GMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSEAISKRRASG-GREVGKI 2091
G ++ + GE+ K+ KS K+ S RDN +HI RR N +AA AM+ G W A Y+ G + T++AS C + L+ +S+ +S R G GR G +
Sbjct: 503 GEAINVNTGEALHKTLKSFAKSTSGRDNIVHIARRLNTRLAADAMMEGLAWEARRYDNRDGWVVS-TVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTV 601
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match:
A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE)
HSP 1 Score: 57.8 bits (138), Expect = 2.720e-5
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1858 TASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASG 2070
TAS RDNE HI+RREND AA+ M G WTA +K + T++AS +C E LR +SE I R A G
Sbjct: 108 TASGRDNEEHIVRRENDATAAEVMAEGARWTAWRDDKTMREWVKKTVQASPSCRELLRAISEWEIGTRTAPG 179
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 4.01e-18 / Id = 35.94 Expect = 1.08e-14 / Id = 49.00 Expect = 1.09e-5 / Id = 37.00 Expect = 2.72e-5 / Id = 48.61 Sequence D7FWW6_ECTSI D8LJH2_ECTSI A0A6H5JF97_9PHAE A0A6H5K7J0_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Exons 2 Model size 2102 Cds size 477 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930818.1018858-UTR-C-linearis_contig95:551278..552333 1622930818.1018858-UTR-C-linearis_contig95:551278..552333 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 551279..552333 + 1690881265.6804104-UTR-C-linearis_contig95:551278..552333 1690881265.6804104-UTR-C-linearis_contig95:551278..552333 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 551279..552333 + 1622930818.1491446-UTR-C-linearis_contig95:553017..553587 1622930818.1491446-UTR-C-linearis_contig95:553017..553587 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 553018..553587 + 1690881265.7325938-UTR-C-linearis_contig95:553017..553587 1690881265.7325938-UTR-C-linearis_contig95:553017..553587 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 553018..553587 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930818.1146233-CDS-C-linearis_contig95:552333..552405 1622930818.1146233-CDS-C-linearis_contig95:552333..552405 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 552334..552405 + 1690881265.6998892-CDS-C-linearis_contig95:552333..552405 1690881265.6998892-CDS-C-linearis_contig95:552333..552405 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 552334..552405 + 1622930818.1293318-CDS-C-linearis_contig95:552612..553017 1622930818.1293318-CDS-C-linearis_contig95:552612..553017 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 552613..553017 + 1690881265.721866-CDS-C-linearis_contig95:552612..553017 1690881265.721866-CDS-C-linearis_contig95:552612..553017 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 552613..553017 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.17006.1
>prot_C-linearis_contig95.17006.1 ID=prot_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNEDVLR back to top mRNA from alignment at C-linearis_contig95:551279..553587+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2309bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous)CAGGTAGTAGTGGCTTCTTATGTTTGGGCTGCCGCTGGATTTTCAACGAC
CGAAACACGCGGCAAAGACATGTATGTAACGAGGCGACACCCAGATCCAG
GGGCGGAGGCTTGAGACAGCGCAAGGAGCCGGTAGCAGTGGTGGCTCGGG
TTCTGGTGCTCCAAGCAGCACCTTGCCGCAAGCTATGGACCGCAGTGGCC
GTAGTAGTGGGTGCGGTGAGTCTCGCTCGTCGCGGAGACGCTCAGCTTCT
CCGCCCACTGCAGGGCAGCGCGACATTCGGCGGCGCCGCCTCATGCCACG
CAGCAGCAGCCATAGTAGTAGCGATTCCGACGGTAGTGAGCAACGAGAGA
GGCGTTACTCCAGCATGATGGACCAGGGCGAGGAGAAGCAGCACCGTGTG
TGTGACAGCAGCAGCAGCAGTAGCGGCGGGGACGCGGCGGCGGTGTTGAC
GAGCCGGGCAGCAGCAGAGAGTGGTCGATCGCACTACTGTACCCCACATC
TCCCTGTCCGTCGGTTCTGTCGTGCTTCAACCACGACGGATTAGGTGTTC
TTTCGTTTGGGGTTGCTGTCGTGCTTCGCGGACTCGCCTGCCCGGAATGC
CATTCTAGATACCAAGAAGGCCAACAGCAAGACCGTCATGCCCTGCCATG
CCTGCGCAGTGGAGCAAGTTGAGCTCAGCGATGGAAAATACGATGTTGAG
AGGTTTCGCCGGACTGACGATGCCACGGGTCCTCTTTGGATGTAGTGAGG
AGCGCCACCACCAATGCAGCGAAGCAGAAGCTTTCGATGGAGCACGGAGT
CAACCTTGCAGAAGTTCCGAACCCACTTCGACAGCACATTTCTGCAAACC
TGACACGCGCCGTCGGGATAGATATCTTCCATTACGACGCCCAGAACTCA
GGCAGGAAGGTTTTGAAGTTCTTCCTTCGTGGTGCCTCCCCCAAAAACGG
CCACCCTGTCATCGCGGGCATCGTTAGGGACCCCCACCTGAGGACGCCGG
GAGCGCCAGCCTTCCGAGACCTCACCGCCCCGGGGGCTTTAGCGCGCAGA
CCGGC ATGGACGTCTGGCGACTGATGGGCGTTGCGGCGCTTGTTTTTCGG
CCGGTGCTTGCGAGCGTGGCTTCGATG GTGAGGGGCGACGTTCATCCCAG
AGACCCAGTGGGGGAAACTCGAACTACTTAAGTTGCCCTGAGCGAAGCGG
CCGCTGCATTCTTACATGCCCACGGTAGTTTTGGTGTAGCGACAGACCCA
AAGTTAGTTGCCTCACATCACTACCAGGCTGAGAGAGCGGTTCCCCATAT
TACGTACGTACATGATCGTTCGCGGTGCTCGCAGAAGCGGCTCTTGACGG
GGCAGTTCCTCACGGAGCTCAGGAAGAGGCTAAACGCGGAGACCAACGAG
GACGTGCTCCGGGAGCTGCGCTCCTTGCTGCAGGCCGCGTCGAGCGCAAC
CTGGCACATACGCGCGGACTCCTTCAGCGAGGCCGACCTGAAGGCCGTGG
AGACAACACAACGAGACAAGGTGAAGGTGGAGCGTCCGCGTTTTTGGTTC
CGTGGGCGACGACCCCCCGGCGGTTTTTCTATCCGGCGGACGACACGCCG
GATCACAGCAGTGACAACGTGCTCGTCCTTGCGAAACAGTGGCGATCCTC
AAGTTGTAGTTCGAGTTTCGTTCGTTCTTAACATATGCGGTCGGGCGCCA
TCTGAACAAGCTATAGTGCTGCCCAAAGCAGGTGACTAA CATGGGCAAGG
TGCTCTCCGACAGGGATGGGGCAAGGCTCTGCAGCAACCACCAGGAACTG
CACATTTCCCAGAACATCCGGGACCTCGGTAAGAATGCGGCGATACATGC
CGTGCGAGGGGTGGGGTGTTGGGTCCTCCCGTGTGATCCATCGCGTTGTA
CACTGACTACTGTTTCAACACACAGTTTTCGCTGAAATACCACCCTGTCG
ACCCTCCTCCTCACACGCTCTGGTTTCCCTTTCGTGGTGCTCGTCCGTGG
AGGCATGGTTGTCGACTGCCACGCGGGTGAGTCACGGTTCAAGTCCTTCA
AGTCGCACGACAAAACGGCGAGTAGCAGGGATAACGAGCTTCACATCCTT
CGCCGCGAGAACGACGAAATGGCTGCGCAGGCGATGATCAACGGGCAGAT
TTGGACAGCATCGGTGTACAACAAGGCAGCAGGGGCGATGGAGCAGGCCA
CGATAAAGGCGAGCGGGACCTGCATCGAGTTCCTGAGAGGCGTCTCGGAG
GCAATTTCCAAAAGGCGAGCAAGTGGAGGCCGAGAGGTGGGCAAGATTGG
TCTGTCAAC back to top Coding sequence (CDS) from alignment at C-linearis_contig95:551279..553587+
>mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous) back to top