mRNA_C-linearis_contig95.17006.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 100 bits (249), Expect = 4.010e-18 Identity = 69/192 (35.94%), Postives = 87/192 (45.31%), Query Frame = 1 Query: 1519 KQVTNMGKVLSDRDGARLCSNHQELHISQNIRDLGKNAAIHAVRGVGCWVLPCDPSRCTLTTVSTHSFR*NTTLSTLLLTRSGFPFVVLVRGGMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASGGREVGKI 2091
++ ++ +L D+ G RLCSNHQ LH ++N D G+ + DCHAGESR KSFKS KTAS RDNE HI+RREND MAA+AM G WTA Y+K + T++AS C E LR +SE I RR GR G +
Sbjct: 731 REKVSLMSMLGDKHGGRLCSNHQGLHFAKNATDYGE----------------------------------------------------------LSDCHAGESRHKSFKSCAKTASGRDNEEHIVRRENDAMAAEAMAEGVRWTAWGYDKTKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIV 864
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.080e-14 Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 3 Query: 1032 GGFSAQTGMDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNE-----DVLRELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKV 1316
GGFSA +GMDVW L VA LVFRPVL SVASMKRL T F ++R L A T+ +V+ +LR+LL A+S AT +R+ SF++ + +++ +QR+K
Sbjct: 343 GGFSALSGMDVWTLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSEATHLLRSSSFNDETVASIDRSQREKT 442
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-5 Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 1795 GMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSEAISKRRASG-GREVGKI 2091
G ++ + GE+ K+ KS K+ S RDN +HI RR N +AA AM+ G W A Y+ G + T++AS C + L+ +S+ +S R G GR G +
Sbjct: 503 GEAINVNTGEALHKTLKSFAKSTSGRDNIVHIARRLNTRLAADAMMEGLAWEARRYDNRDGWVVS-TVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTV 601
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.720e-5 Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 1858 TASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASG 2070
TAS RDNE HI+RREND AA+ M G WTA +K + T++AS +C E LR +SE I R A G
Sbjct: 108 TASGRDNEEHIVRRENDATAAEVMAEGARWTAWRDDKTMREWVKKTVQASPSCRELLRAISEWEIGTRTAPG 179 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.17006.1 >prot_C-linearis_contig95.17006.1 ID=prot_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNEDVLRback to top mRNA from alignment at C-linearis_contig95:551279..553587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2309bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:551279..553587+ >mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous)back to top |