mRNA_C-linearis_contig95.16995.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Exons	5
Model size	752
Cds size	699
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.16995.1	prot_C-linearis_contig95.16995.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig95 433333..436937 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930808.600481-UTR-C-linearis_contig95:433281..433332	1622930808.600481-UTR-C-linearis_contig95:433281..433332	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig95 433282..433332 +
1690881260.8161712-UTR-C-linearis_contig95:433281..433332	1690881260.8161712-UTR-C-linearis_contig95:433281..433332	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig95 433282..433332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930808.631931-CDS-C-linearis_contig95:433332..433335	1622930808.631931-CDS-C-linearis_contig95:433332..433335	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 433333..433335 +
1690881260.8269935-CDS-C-linearis_contig95:433332..433335	1690881260.8269935-CDS-C-linearis_contig95:433332..433335	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 433333..433335 +
1622930808.6447012-CDS-C-linearis_contig95:434514..434557	1622930808.6447012-CDS-C-linearis_contig95:434514..434557	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 434515..434557 +
1690881260.8372087-CDS-C-linearis_contig95:434514..434557	1690881260.8372087-CDS-C-linearis_contig95:434514..434557	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 434515..434557 +
1622930808.6565547-CDS-C-linearis_contig95:435356..435457	1622930808.6565547-CDS-C-linearis_contig95:435356..435457	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 435357..435457 +
1690881260.8491166-CDS-C-linearis_contig95:435356..435457	1690881260.8491166-CDS-C-linearis_contig95:435356..435457	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 435357..435457 +
1622930808.6744003-CDS-C-linearis_contig95:436072..436310	1622930808.6744003-CDS-C-linearis_contig95:436072..436310	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 436073..436310 +
1690881260.8664792-CDS-C-linearis_contig95:436072..436310	1690881260.8664792-CDS-C-linearis_contig95:436072..436310	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 436073..436310 +
1622930808.6899712-CDS-C-linearis_contig95:436623..436937	1622930808.6899712-CDS-C-linearis_contig95:436623..436937	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 436624..436937 +
1690881260.8771024-CDS-C-linearis_contig95:436623..436937	1690881260.8771024-CDS-C-linearis_contig95:436623..436937	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 436624..436937 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig95:433282..436937+
coding sequence from alignment at C-linearis_contig95:433282..436937+

protein sequence of mRNA_C-linearis_contig95.16995.1

>prot_C-linearis_contig95.16995.1 ID=prot_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQPRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISA
FEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLP
LTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFPPPEEED
SEEEDDEEEAGDAVGSSAEERQEEGEGEGQETPDSVGTGAGADGGGRRRR
QRRRRILEDGRWTGAALPAHNAGAGAAVAAAAA

mRNA from alignment at C-linearis_contig95:433282..436937+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig95.16995.1 ID=mRNA_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3656bp|location=Sequence derived from alignment at C-linearis_contig95:433282..436937+ (Chordaria linearis ClinC8C monoicous)
GGGCTGTCTCCCACCGCCAGCAGCGGCAGCTAGAGCCTAGTACCTGGCGA
CATGGTGAGCGGATGGTGTTGCTTCGATTAGAGCGTAGGGTTCTTCTCCC
TGCTCTCGCATTGTCTGCAGCCCTACCCGACGCGCTCCTGCTCGAGCCTT
TTGCCATCACACAACAGGCTCAACCCGCCGATGTGGTTCTTCTGTCTGCC
TCTCTCTCTGCAGATTGCTGTGTGTCTCAGAGCCAGAGGCACCAGCAGTC
AGCCACATATGATGGGCAGGCAGACATATTTCCCTTTGCCCGCATTTCTC
GGCTCCAGCAGTCTTCAAAGGGTTTGAGTGCAACCGGCAGCAGTAGGTAC
CCTTTACCTCCTGAGACGTGTGGAGGCATTACCGGAACTCCGATGTTTGT
CTTGAGCCTAAAGCAGCAGCGTACTAGGTAGGTAGGGCGTGGAGGTAGCG
CCAGGGGCAGGTGGCAAAGCTGCTAGTGCTGAGCCCTAAAAATCCCCCTG
CGGACAAACTGTTCGATTTTGGTTTGTTTCGCTCAGGGATAGCACCCACA
CACACAGCGGCACCAGATGACGGGTGTACATGTGTTCTTGATGGCTGCGG
TTGTTTGATTGTTCTACCCTCATACTTTCGATACTGCTGTATGTAATGAA
TGTAGCAAAGTGCTTACACCGAAAGTAGCCTGCAGCGCGAGAGGTAGCGC
CCAGGCTAGTGAATGAAAGATATCAATATCTGCGCCTCAGCCGCTTTCAA
CATGACCGAATTTGACCAATATTTTTATTTAGACACAGAGTTTGCGCTCC
GCCAATATTAATATCTAGACACGCACGTTTGCGCTCTGCCGCCGGCGCGC
CACCCCTGAACCTGGCCTGCTGTCCCACATCAGTGGGTTTCAGTCTACAG
ACTTTACAGCAGGGGGCGGGTTTTCCATATTCGCTCGCTCTGCCCAAAAT
GCTTGTTTTGCTTGACGAGGCCGCTGCTGCTGTGCGCTCTCTCTCCTAGA
ATGATGATGGCGGCGTTTTCGGGTCACATACATACATTTCGAAGTACATA
CATACAGGAGTAGCACCATTCTCTCATTGGAGCCCTTCCCCGACAGAATG
GATTGGTTGTGGCTCGTGCGAGTCTTCCGCGGGTTCCCGCAGACGTTTGT
TAACCATTATACCCCCACCTCGCCTCCTTGTGTATTTCTCACTGGCTTGG
CATCGTGCGCGCGTCGCCGCTTGGGACGCGAAGCAGCCCAGACCCCAATA
CGATGACGAAGACGGGCCCCCCGTGGGTGAGACAATATTTGTATCTACGT
ATCATAGATGCATGCGAATAGAAGTTCCTACACCCCAGAGCAGGTAGACT
ATGTGCCTTGATTTCCTTGTGTGAAGAGAGCTGGGCGGAGAAGCTGTGGC
CTTGAAGAGAAAGAAGCATGTCGACAAGAGAATGCGTGCGGCATTCGGGA
TCGATGATTTGGGCAGGAAATAGACCCAGGGGTCGCTTCACCAGACTCCT
CCCACCTCCGGCGGTATCTTGAAATTTAAGTATAGCCGTATCGTTCGAAC
GCCAAGTTTCGACTGTGGTATGATACGATACAATGCAGACCCAGAAAGTT
GGCCCAACACCCAATCAAACTATATTGAGGGGCACCGTGTATTGTGTGTG
TGCGTGTGTGTTGTTTTAAAGTTTAGGCAATGTTGCAACAGCAGGGGCAG
CAACAGCTGGCATCTCGTTGGCGTTGATGGTTGGCTCCGATGTTGTTGCG
CCAGCCAGGCCTAAAGGGCGTTGCTTTGCCGCGGCTGCGTGGCTGTTGTG
GGCGTCTGTCCACCTGCCACCCCGAACGCGGCGTAAATTCGGGTGCATGT
CCACTCTCAGCCTCTCAGCGTCCACCGAACCTCGTATATTTTCCCAAAGC
TTTTCTGCTGATCGCGGAGGCCGGCCTACGGGCGATGTTCGCTGGGCTTT
CTGTTTCCTCTCTGTGTGCTGTAGCTGCTGTCTGTGCATGCACCCTGTGT
AACCAATACCTCTCCATGCACGGCCCGTCCCCAAACATCATCCGAAAATC
TGAAAATCTGGACAATCGAACACAGGCGTATCGTTTCTTCTTGTCGTCCT
CGGCGCGGTGGCTCTGTGCATCGCCGCGGTTTACCTCAGGGCGTCCACTC
TGCACGAGCGAGAGATCAGAATCTCGGTGAGCCCTGCCCCGCGCGTTCGG
GTGTGCTTGCTTTGGTTTGCTTTGCTTTGAGAAGCCGTTTATCTGCGCCT
GAGGTGTGTCAAGTCATTTGCCGGGTTTTTCGATTACAAGAGGGTTGATG
CAGGACCGGAATCAACCAGTGTTTCATTCCTCTTCTTGACCCGCCTGCTC
GCTGCTCAACAATTACTTTAGGGGCCGGCTAGCCGTATCACCAATCCTAA
ACCTGGCTCCACATCACTCACAGCAGACCGAGTTGGCATGCACATGAAGT
CATGATGTGTCCCGCTTCACTACCGCTTACTCAATTTTTCGCGTCCACAC
CTACAATGCCGATTTGTAGCCCTACTGTATGTAGCTTCGGATCACTCAAA
CGTATCTGACCGCTGGCGGTGTACGTAACACACACCATTGTGGAACGTCA
TCTTTCCCCGCTACGGACCCGCGTGAAATCTCCGCCACCATGCCCGCGAA
CCGTAGTTTTCACCTTTGGATAACTCGTACACAGCTCTGGCCACAACGTG
TCGCCTAAGTCTGCCACGTTATTTCACGTTCCCCCCTCCGCCCGCCGCCG
CCGCCTGCTCGAAAAACTCGAAAAATCCTTCTCTCCACCAGGCCTTCGAA
GCGACCATCTCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCTCTC
CGTCAACGTGACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGTCCC
CGGGGCTGGACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTCACG
GTCTCCGAGAACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGGCGG
GCTGCCAAACTACGAGCCCCTGAAGCTTGGTGAGGGCAGGATAGGGCCGG
GCCGGACTGGGCGGGGCCGGGGGAGTTGGTGGTTCAGTTTTGGCGTGTTT
TGAGGGGCGGTAGGGGCGGTCGGAGAGGCTGCCTCCGATGGCAGGCGTTG
TTTGTGCTGTACCTTTCTGTCGTCTGCTGCCGGAAGGTAGCTGCTGCTGC
TGCTGCCGCCGCGGCGGCGGCGAGGGCGGCGGCGAGGGCGGCGGCGGCCG
CGTGTGGTTGAACGTATTCCCCCCCCGTCCTCTTATAATCCCAGCAAGGC
AAGCCGAACCCTAACCCAACCCTCCGCGCGTTGACCCCGCAGACAGAGGA
ATCGCGCCGCTCCCGTGGAGAACCGCCCCGCGGTTTCCCCCTCCAGAAGA
AGAAGATTCCGAGGAAGAGGACGACGAGGAGGAGGCAGGCGATGCTGTCG
GGTCTTCGGCAGAGGAAAGGCAGGAGGAGGGAGAGGGAGAGGGACAAGAA
ACCCCCGACAGCGTCGGGACCGGTGCGGGCGCGGACGGCGGCGGAAGGCG
GAGGCGGCAACGGAGGCGACGAATACTGGAAGACGGCCGATGGACCGGCG
CCGCGTTGCCAGCACACAACGCCGGTGCTGGGGCGGCGGTAGCGGCAGCG
GCAGCG

Coding sequence (CDS) from alignment at C-linearis_contig95:433282..436937+

>mRNA_C-linearis_contig95.16995.1 ID=mRNA_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at C-linearis_contig95:433282..436937+ (Chordaria linearis ClinC8C monoicous)
ATGATGCAGCCCAGACCCCAATACGATGACGAAGACGGGCCCCCCGTGGC
AGCCCAGACCCCAATACGATGACGAAGACGGGCCCCCCGTGGGCGTATCG
TTTCTTCTTGTCGTCCTCGGCGCGGTGGCTCTGTGCATCGCCGCGGTTTA
CCTCAGGGCGTCCACTCTGCACGAGCGAGAGATCAGAATCTCGGCGTATC
GTTTCTTCTTGTCGTCCTCGGCGCGGTGGCTCTGTGCATCGCCGCGGTTT
ACCTCAGGGCGTCCACTCTGCACGAGCGAGAGATCAGAATCTCGGCCTTC
GAAGCGACCATCTCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCT
CTCCGTCAACGTGACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGT
CCCCGGGGCTGGACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTC
ACGGTCTCCGAGAACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGG
CGGGCTGCCAAACTACGAGCCCCTGAAGCTTGGCCTTCGAAGCGACCATC
TCCGCTTGGAACACCTCCCGCCCGATGTTCGCCCGCCTCTCCGTCAACGT
GACGGCGCACTTCGGGGTGGCCCCGCCGAACACCACGTCCCCGGGGCTGG
ACCCCAACCCTCCCGTCCCCGCCCCCCCCCTCCCGCTCACGGTCTCCGAG
AACCCGGACCCGATCTATGACGAGGAGGGCGCCTCGGGCGGGCTGCCAAA
CTACGAGCCCCTGAAGCTTGACAGAGGAATCGCGCCGCTCCCGTGGAGAA
CCGCCCCGCGGTTTCCCCCTCCAGAAGAAGAAGATTCCGAGGAAGAGGAC
GACGAGGAGGAGGCAGGCGATGCTGTCGGGTCTTCGGCAGAGGAAAGGCA
GGAGGAGGGAGAGGGAGAGGGACAAGAAACCCCCGACAGCGTCGGGACCG
GTGCGGGCGCGGACGGCGGCGGAAGGCGGAGGCGGCAACGGAGGCGACGA
ATACTGGAAGACGGCCGATGGACCGGCGCCGCGTTGCCAGCACACAACGC
CGGTGCTGGGGCGGCGGTAGCGGCAGCGGCAGCGACAGAGGAATCGCGCC
GCTCCCGTGGAGAACCGCCCCGCGGTTTCCCCCTCCAGAAGAAGAAGATT
CCGAGGAAGAGGACGACGAGGAGGAGGCAGGCGATGCTGTCGGGTCTTCG
GCAGAGGAAAGGCAGGAGGAGGGAGAGGGAGAGGGACAAGAAACCCCCGA
CAGCGTCGGGACCGGTGCGGGCGCGGACGGCGGCGGAAGGCGGAGGCGGC
AACGGAGGCGACGAATACTGGAAGACGGCCGATGGACCGGCGCCGCGTTG
CCAGCACACAACGCCGGTGCTGGGGCGGCGGTAGCGGCAGCGGCAGCG

mRNA_C-linearis_contig95.16995.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0