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Homology
BLAST of mRNA_C-linearis_contig95.16980.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.540e-29 Identity = 67/143 (46.85%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 1 EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALFGTAFHTAQRGFDLSCALAAQVLSLPGGKGLIFNFHFGKTLRDSSLAIVARRDRACHELCPVRAVQVFAIVANSMGWQLREGYMFPKFEAGGSR 429
EQ+RVGV + QA ML V + L+R MR A + R+E +RD+ALF AF +RG DLS + +QVL LP G+GLIFNF FGKTLRDS A+V D AC +C V V + A +GW L +G++FP G+R
Sbjct: 815 EQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAVVVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVVLLDGTR 957
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 62.8 |
| Seed ortholog evalue | 2.3e-07 |
| Seed eggNOG ortholog | 83406.HDN1F_17240 |
| Preferred name | tnpS |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Belongs to the 'phage' integrase family |
| EggNOG OGs | 1MWGG@1224,1RNMU@1236,COG0582@1,COG0582@2 |
| Ec32 ortholog description | imm upregulated 7 |
| Ec32 ortholog | Ec-21_006530.2 |
| COG Functional cat. | L |
| Best tax level | Gammaproteobacteria |
| Best eggNOG OG | NA|NA|NA |
| Exons | 1 |
| Model size | 633 |
| Cds size | 633 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930813.8086016-CDS-C-linearis_contig95:281037..281670 | 1622930813.8086016-CDS-C-linearis_contig95:281037..281670 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 281038..281670 + |
| 1690881263.369827-CDS-C-linearis_contig95:281037..281670 | 1690881263.369827-CDS-C-linearis_contig95:281037..281670 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 281038..281670 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16980.1 >prot_C-linearis_contig95.16980.1 ID=prot_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp
EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALF
GTAFHTAQRGFDLSCALAAQVLSLPGGKGLIFNFHFGKTLRDSSLAIVAR
RDRACHELCPVRAVQVFAIVANSMGWQLREGYMFPKFEAGGSRSRSPWNP
KDMALALQSNVAAAGLEEGRKYSMHYFRIGGAVSQAFTGTAVDAPMGLVG
WKTRGVAQRYV back to topmRNA from alignment at C-linearis_contig95:281038..281670+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)
GAACAACGTAGGGTTGGCGTCACGATAGAGCAGGCCCGGCCGATGCTGAC
CCCGGTGCCGCTACCCCTCATTCGGTACATGCGGCAGAGCGCTAGCCGGC
TCGGGACCGCTAAGGCTAGGGTAGAGAGGAGTAGAGACATCGCCCTGTTC
GGGACAGCTTTTCATACTGCGCAAAGGGGTTTCGACCTGTCGTGCGCACT
TGCCGCGCAAGTTCTGAGTCTGCCGGGAGGCAAGGGCCTCATCTTCAATT
TCCATTTTGGCAAGACGCTGCGCGACTCGTCGCTAGCAATCGTAGCGCGG
CGCGACCGCGCTTGCCACGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTT
TGCCATCGTGGCCAACTCCATGGGCTGGCAGCTGCGGGAAGGGTACATGT
TTCCCAAGTTCGAAGCCGGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCC
AAAGACATGGCGCTAGCTCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGA
GGAGGGGCGCAAGTATTCTATGCATTATTTTCGCATAGGAGGGGCCGTTA
GCCAAGCCTTTACCGGCACGGCGGTCGACGCCCCCATGGGTTTAGTGGGG
TGGAAAACTCGGGGGGTAGCTCAGCGGTACGTC back to topCoding sequence (CDS) from alignment at C-linearis_contig95:281038..281670+ >mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)
GAACAACGTAGGGTTGGCGTCACGATAGAGCAGGCCCGGCCGATGCTGAC
CCCGGTGCCGCTACCCCTCATTCGGTACATGCGGCAGAGCGCTAGCCGGC
TCGGGACCGCTAAGGCTAGGGTAGAGAGGAGTAGAGACATCGCCCTGTTC
GGGACAGCTTTTCATACTGCGCAAAGGGGTTTCGACCTGTCGTGCGCACT
TGCCGCGCAAGTTCTGAGTCTGCCGGGAGGCAAGGGCCTCATCTTCAATT
TCCATTTTGGCAAGACGCTGCGCGACTCGTCGCTAGCAATCGTAGCGCGG
CGCGACCGCGCTTGCCACGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTT
TGCCATCGTGGCCAACTCCATGGGCTGGCAGCTGCGGGAAGGGTACATGT
TTCCCAAGTTCGAAGCCGGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCC
AAAGACATGGCGCTAGCTCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGA
GGAGGGGCGCAAGTATTCTATGCATTATTTTCGCATAGGAGGGGCCGTTA
GCCAAGCCTTTACCGGCACGGCGGTCGACGCCCCCATGGGTTTAGTGGGG
TGGAAAACTCGGGGGGTAGCTCAGCGGTACGTCGAACAACGTAGGGTTGG
CGTCACGATAGAGCAGGCCCGGCCGATGCTGACCCCGGTGCCGCTACCCC
TCATTCGGTACATGCGGCAGAGCGCTAGCCGGCTCGGGACCGCTAAGGCT
AGGGTAGAGAGGAGTAGAGACATCGCCCTGTTCGGGACAGCTTTTCATAC
TGCGCAAAGGGGTTTCGACCTGTCGTGCGCACTTGCCGCGCAAGTTCTGA
GTCTGCCGGGAGGCAAGGGCCTCATCTTCAATTTCCATTTTGGCAAGACG
CTGCGCGACTCGTCGCTAGCAATCGTAGCGCGGCGCGACCGCGCTTGCCA
CGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTTTGCCATCGTGGCCAACT
CCATGGGCTGGCAGCTGCGGGAAGGGTACATGTTTCCCAAGTTCGAAGCC
GGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCCAAAGACATGGCGCTAGC
TCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGAGGAGGGGCGCAAGTATT
CTATGCATTATTTTCGCATAGGAGGGGCCGTTAGCCAAGCCTTTACCGGC
ACGGCGGTCGACGCCCCCATGGGTTTAGTGGGGTGGAAAACTCGGGGGGT
AGCTCAGCGGTACGTC back to top
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