mRNA_C-linearis_contig95.16980.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16980.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.540e-29 Identity = 67/143 (46.85%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 1 EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALFGTAFHTAQRGFDLSCALAAQVLSLPGGKGLIFNFHFGKTLRDSSLAIVARRDRACHELCPVRAVQVFAIVANSMGWQLREGYMFPKFEAGGSR 429
EQ+RVGV + QA ML V + L+R MR A + R+E +RD+ALF AF +RG DLS + +QVL LP G+GLIFNF FGKTLRDS A+V D AC +C V V + A +GW L +G++FP G+R
Sbjct: 815 EQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAVVVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVVLLDGTR 957 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16980.1 >prot_C-linearis_contig95.16980.1 ID=prot_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALFback to top mRNA from alignment at C-linearis_contig95:281038..281670+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:281038..281670+ >mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)back to top |