Homology
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match:
A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)
HSP 1 Score: 63.2 bits (152), Expect = 3.960e-9
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2
Query: 47 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTG 148
S WQ+LAGGT GGVIGMTVVYPLDT+K RLQT+G
Sbjct: 3 SLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSG 36
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match:
A0A6H5K323_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K323_9PHAE)
HSP 1 Score: 57.8 bits (138), Expect = 4.200e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query: 47 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLVSRPHVSAGGIRDDV 202
+ WQDL GGTVGGVIG+T V PLDTVK RLQT G L + +S+ + + V
Sbjct: 3 TLWQDLTGGTVGGVIGVTAVCPLDTVKSRLQTGGRYLGTVQVLSSMAVHEGV 54
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match:
D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)
HSP 1 Score: 56.2 bits (134), Expect = 9.040e-7
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 3
Query: 141 QRVMSWYRGLMSPLVGFGTMFAVAFASFGSASRFLLR 251
+ +MSWYRGL+SP+ G+G MFAV+F+S+G ASRFL R
Sbjct: 5 EGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQR 41
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.96e-9 / Id = 82.35 Expect = 4.20e-8 / Id = 55.77 Expect = 9.04e-7 / Id = 64.86 Sequence A0A6H5JUA4_9PHAE A0A6H5K323_9PHAE D7FLY9_ECTSI back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 397 Cds size 324 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930807.9225883-UTR-C-linearis_contig95:274624..274634 1622930807.9225883-UTR-C-linearis_contig95:274624..274634 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 274625..274634 + 1690881260.4716423-UTR-C-linearis_contig95:274624..274634 1690881260.4716423-UTR-C-linearis_contig95:274624..274634 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 274625..274634 + 1622930808.010147-UTR-C-linearis_contig95:277012..277075 1622930808.010147-UTR-C-linearis_contig95:277012..277075 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 277013..277075 + 1690881260.531118-UTR-C-linearis_contig95:277012..277075 1690881260.531118-UTR-C-linearis_contig95:277012..277075 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig95 277013..277075 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930807.9545374-CDS-C-linearis_contig95:274634..274756 1622930807.9545374-CDS-C-linearis_contig95:274634..274756 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 274635..274756 + 1690881260.4889305-CDS-C-linearis_contig95:274634..274756 1690881260.4889305-CDS-C-linearis_contig95:274634..274756 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 274635..274756 + 1622930807.9706311-CDS-C-linearis_contig95:275283..275297 1622930807.9706311-CDS-C-linearis_contig95:275283..275297 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 275284..275297 + 1690881260.504141-CDS-C-linearis_contig95:275283..275297 1690881260.504141-CDS-C-linearis_contig95:275283..275297 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 275284..275297 + 1622930807.9944122-CDS-C-linearis_contig95:276824..277012 1622930807.9944122-CDS-C-linearis_contig95:276824..277012 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 276825..277012 + 1690881260.5206857-CDS-C-linearis_contig95:276824..277012 1690881260.5206857-CDS-C-linearis_contig95:276824..277012 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 276825..277012 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16978.1
>prot_C-linearis_contig95.16978.1 ID=prot_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
MEDGREEEAMGASFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLV back to top mRNA from alignment at C-linearis_contig95:274625..277075+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16978.1 ID=mRNA_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2451bp|location=Sequence derived from alignment at C-linearis_contig95:274625..277075+ (Chordaria linearis ClinC8C monoicous)CAAGCGAGAG ATGGAGGACGGGAGGGAGGAAGAGGCCATGGGGGCCTCCT
TCTGGCAGGACCTCGCCGGCGGTACCGTGGGCGGCGTCATTGGGATGACT
GTCGTGTACCCTCTCGACACGGTGAAGTGCAG GCAAGTGCGGCTGGGTGA
CGTGGCAAGTGTTCCCGGTGCCACAAGTGCAACACTTCGTTCCTGCCTCT
CGTTGTTGCCTGGCTCCTTCTCTCCCTCCCCTCTCCTGGGTTGAGACCAG
CTCGGCCGTCTACCCTAGCCGAACAGCAGCAGTTGGTCTTCTCCAAACTC
TTATGAAAAACGGGCATGCCATTGCGCCCCTACAAGCGTACAAGCGAGCG
CAGCCAGTTTGGCATCAGTTTATTTTCATTTCTTTGTTGCAGATGACAAC
TTTCGGAACATACCTGCTGCCTGGGATTGCTTGCTCCGGCGCGATACCAA
CGGCCCCTGTTTGTGGACATATGGGCTATGGGCTATCCGGTTAGCAGGAC
CTTCCTCCTCAAGTTTTTTTTTGACGCACATCTGCATCATTTTTCGATGG
CGTGCATGTGATGCAGATGATGCAGGTACAGACGGTATCAGTACAAATAA
TCCCCAGGGCCCGCCCTCGCCCCCCTCGCTCTGCTCGCTCCCTCGCCGCT
GGCTTACAGGTTGCAGACAACGG GTAAGTACGGAGGCATGGCCCATGTGC
TTACCTCCATGGCGAGAAAGGAAGGAGTGAGACAAAACGAGAGAGAGAAA
ACTGCTGTGTCGTTGCTTGCCCTGCGGCGATGTTCGGCCGTCAAGCTGTA
CTCTGACTTTTCTCCAAAAGGGTCCCGTGCCGTACAACAGCTGTGCGCAT
ATTTCAGGAACATTCGATAGAGTTTAGCGGATTCTGAGAACAGGCCGGGA
GGGAGAAAAACATGCGGATTCAGAGAGCATGGCTGCACACACTTATTATA
ACACACACACACACATGCACGCGCGCGCACACACACACACATTCGGATCA
AGACGAGCCACACGGCGCGCGTCGCCGAGGACGCGAAAACCGAACCGGGC
TAACCGCACAAATGTTGTATGTAGCTCAAGTTGTACATGGTTGTGGGAGC
GAAGGTTCGTGCCCCCGCTTCCGCGGAAGCGGCTTGAACGGCAGTGAGAA
GTGAACGCGGGAGTGGCTGCTGCTGTCAGAACACACGGGAAGCGGAGCTG
CCCCGGGGATACTCCTAAACTCTAAATTCCCCAACGTTCATTCAGAAGTT
CAAAATCTTCAAAGCTGTTAAATACGGCTCTGAAAGGCGACACACTGCAG
CGAATAGTTTCTAGCAGAAAGACGAACCGAAACAGGAGCAAAATATTATC
TCGGGTTTGCTTTCGCCAGGAAACAGCTACACCAGTATTTCTTCAGTAGT
AGCAGTCCTGCAGGGCGACACCACCGCACCGGGAATGGTTCACCGTGGTC
TTCCCCTTCTACAGCAGTAGACTTCGACAGAATCCTGCCGATACACACGT
ACATACGTATGCTTGGTTCCAATACACGAGAAGCCTGGACTGACTGGCGT
ATAGCTCGACCGACCTTACAATCCCACCATCCCACTACAAGTATCCCACT
CCGGCGGAGGTTCAGGAAAAAGTGAGCTTTCTGCTTTTCTGTTTCCGCGT
GTCGGGCCGCCTGCACACTTTCGTGGCCATTAGACCAACATCAAACCTAT
GCTATTAGAACATTAGAACAGTGCCCTTCTCTCGATTTCTCGGGAAGTGG
AAGCACCGCCCAGGACAGGACAAGTCAAATCAGTGTGTATTGTTTTGTTT
TGGTCGTTTCTTTCCTTGGTCTGTTCAGTGCGTTTCTAGTTTATTTAGTC
TGGTCTGTTCAGTGCTCTCGCGCGTTTCTTCAAAACTGAATCCTTGCGGC
AACCGGAGCTAACCCCAACAAACTCGTGTTGCTTATTTAGATTCCAAAAA
TGTGACACGGTGCGTCCATACGTTGAAGTACAAGGTGACGCCGTGATGAT
TGTTCGAAAGGACGGCGGTGACTCATGAGGCGCCTTCTTCTTCTGGCGCT
GGCTACAAAAGTGGTTTTTAGACGCCCTGCGACGAGTCACGCGGCTGCAC
GGCACCTGTCTCTCGATTCAATCTCCTCCTCACTTATAACAATCTCTTCT
TTTTTGTGCTGTTCCGCCACCAAATGTCGAATATTGTGCTGCGCTCGCAG
GTGATGTCCTGGTATCGAGGCCTCATGTCTCCGCTGGTGGGATTCGGGAC
GATGTTTGCCGTTGCCTTCGCCTCCTTCGGCTCCGCCAGCCGTTTCCTGC
TAAGGTTCGCTCGTTATGGCCCAAGTGTTTTTTCCGATTCCCACAAGGTC
GCCCCGGTGGTCTAGTTGATAAACCGCACACCTTCTAG CGCCCAGGTCAC
GGGTTCAAATCCCGGCGTATGCGATCTTTTCTCACAATAAAAACCGTGAG
T back to top Coding sequence (CDS) from alignment at C-linearis_contig95:274625..277075+
>mRNA_C-linearis_contig95.16978.1 ID=mRNA_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at C-linearis_contig95:274625..277075+ (Chordaria linearis ClinC8C monoicous) back to top