mRNA_C-linearis_contig95.16976.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16976.1
Unique NamemRNA_C-linearis_contig95.16976.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Match: D7FLY7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.450e-19
Identity = 65/195 (33.33%), Postives = 84/195 (43.08%), Query Frame = 1 
Query:  514 MLDAGVFVAGFALVAFAWNLGRMNNVMKKCELEGCKTGCKSNEGCQSNDPRGVENLEDWNWNVQCSENADPVARCVRNSHDSRVSINDPDGDEWNTARSALCVRNVQEVDFGAPSNDADGDGDETKTTECCGEGAQPTERDIVMFKEAKRREHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG 1098
            +LDAGV V   ALV   WNLGRMNNVMK+ E                              N  C E   P    +       + +   + D+  T          +E +  +P+                     PT +D+ M K A RREH + MVPG+LTP PWRS++YGRGRP       SLSSSG++MAG
Sbjct:    2 ILDAGVVVGTCALVVLVWNLGRMNNVMKELE------------------------------NQCCEEERTPDTFDIEAKGGGELVLVKDEEDDGQT---------TEEAEERSPT---------------------PTRQDVAMLKAAMRREHLQRMVPGTLTPDPWRSIFYGRGRPTDVGPCRSLSSSGHSMAG 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLY7_ECTSI1.450e-1933.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:261033..263122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000210.1
Exons2
Model size1177
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16976.1prot_C-linearis_contig95.16976.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 261109..262609 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.3058617-UTR-C-linearis_contig95:261032..2611081622930813.3058617-UTR-C-linearis_contig95:261032..261108Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 261033..261108 -
1690881263.206071-UTR-C-linearis_contig95:261032..2611081690881263.206071-UTR-C-linearis_contig95:261032..261108Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 261033..261108 -
1622930813.346039-UTR-C-linearis_contig95:262609..2631221622930813.346039-UTR-C-linearis_contig95:262609..263122Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 262610..263122 -
1690881263.2575743-UTR-C-linearis_contig95:262609..2631221690881263.2575743-UTR-C-linearis_contig95:262609..263122Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 262610..263122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.3220818-CDS-C-linearis_contig95:261108..2616091622930813.3220818-CDS-C-linearis_contig95:261108..261609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 261109..261609 -
1690881263.2221591-CDS-C-linearis_contig95:261108..2616091690881263.2221591-CDS-C-linearis_contig95:261108..261609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 261109..261609 -
1622930813.3332832-CDS-C-linearis_contig95:262522..2626091622930813.3332832-CDS-C-linearis_contig95:262522..262609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 262523..262609 -
1690881263.2393558-CDS-C-linearis_contig95:262522..2626091690881263.2393558-CDS-C-linearis_contig95:262522..262609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 262523..262609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16976.1

>prot_C-linearis_contig95.16976.1 ID=prot_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=196bp
MLDAGVFVAGFALVAFAWNLGRMNNVMKKCELEGCKTGCKSNEGCQSNDP
RGVENLEDWNWNVQCSENADPVARCVRNSHDSRVSINDPDGDEWNTARSA
LCVRNVQEVDFGAPSNDADGDGDETKTTECCGEGAQPTERDIVMFKEAKR
REHFEGMVPGSLTPYPWRSMYYGRGRPRCARRLSSLSSSGYNMAG*
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mRNA from alignment at C-linearis_contig95:261033..263122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16976.1 ID=mRNA_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2090bp|location=Sequence derived from alignment at C-linearis_contig95:261033..263122- (Chordaria linearis ClinC8C monoicous)
CGGAAGAGAGCTGACGGAAGATGGAAGCCCTGCCGAGAGAAAACCAAGGG
ATGGAATATAACTTCTGTCGGGGTTGCCCCCTTTGCACTGTAATGGAGCT
TGAATGCGAGGGTCTTACGCTGGTGCCGGGGCCCTTTGCGGGTTGGCGGT
TGAGACTCCGAGTCGTCCCAATGTCAGTACGACAAGGAGAGAGATGACGC
CATGACGCACGCGACAGGGGGCTGCGTACACCCAAAGACGGGTGCTCGGA
TCATTCCTTCTGTACGTGCAACGTTCCGCAGGCGGAAAGGGAAGCGATAT
GACATCGACGGGGCCGGTGTGCGTGGGGGCAAAGCGTGCTGTGCACCAGC
CCCACCGAGTCATTCCCAAACTCGTTCCTCGTTCCAGCTACAACAGGGAT
GGGTTAGCTGCAACTTCTCGCGAATTCAAGCGTTTTCAATGAGGTGATCG
TGTGCCAAGACGGCACAACTAGAAAAGGAAAGAGAGACGGAGAGGGCAGG
ACCAGGACACAAGATGCTTGACGCTGGAGTCTTTGTGGCGGGATTCGCCC
TCGTGGCGTTTGCGTGGAACTTAGGCCGGATGAACAACGTGATGAAAAAG
GTTGGTTTCTGTCAGAACGAGAGAAAGAGAAATACTGCGGCGCAAACGGC
AGCTACCCGTTGGGCAGTAGGTAGGCGAGGATGCTCGGCGCACGCAGTCG
TTGCCTACTGCTGTGTACCTTTCGCCACCTCTATTTGGATGTAGCTAGAG
TCGTGCCGGCGTGTTGCACATACCATCGGAGAGGATATTGATTTCAGGGG
GGTGGGCTAACTTGTGCGGCGGCACGTGGCTGGTGCCGCAGTCGTTCATC
GCCGATCGCACATGAGTCCACATCCTTGCAGAAATGATAAATGGATTCTC
TTGCGGCGGATGTGTGCTTAGATTTGTTCCGGCGACGGAGGCCGAGCTTC
CCGTCGGGCGACACCCGACCTGCAGAAAAGCGTCATCGTTGAGAAACGCC
GCCTGCGAGCTAGCGAAACCTTTGAGAAATTCAGAAATCGGGTTAATGGC
AGCGATTGCAACGTCGCCTATGTTGAACCTTCGCCTCTGAGAAAAAAACA
TGCCAATATTCTGCACCTACTGCAGTCTATACCTGGTATTCTCCAAGGCT
TCTCCCGCCAGCGTTTGCCGATCTCCAAGCATGATTGTCGAGACACAAAT
GCGTGGCGAGGCGAATGACGCTTGATTCGTAGCATTCCTCTTCTCAGTTG
TCTCAGTCTGTTGCCGCCGTCGAGGCTGAGAAAATATTAATTCTCGCTGA
CGATCCCCTAGGCATTAGGCCCTTGTTCCGGTGGGTACTTCAGCCAGTTG
GCTTGTCTTCGCAGTCGTTAAGTTGTGGTTTCTGAATATCCTGCTGCTTT
CTCTCATGCCGCCGTCCCTCCTCTCCTTATTCCAAACATCTCTCCCGCTC
TTTCCGTACTCGTCCTTCTCTTTTTCCGTTCTGTCGCTGTGACCTTTCGA
TCATCATCGACAGTGTGAGCTTGAGGGCTGCAAGACGGGCTGCAAGAGCA
ACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAGAACCTCGAGGAC
TGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCCTGTTGCTCGCTG
CGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACGATCCGGATGGCG
ACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGCAACGTACAGGAG
GTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGACGGAGACGAAAC
AAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAACCGAACGCGACA
TCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTCGAAGGCATGGTG
CCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTACTACGGACGCGG
TCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCAGCAGCGGCTACA
ACATGGCCGGTTAGGCTGGACAATGACGGCATGCGCATATTCGAGTAGGA
AAAAACACGCCGTTCACCGGTTGGCCAGGGTCCATCTCGG
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Coding sequence (CDS) from alignment at C-linearis_contig95:261033..263122-

>mRNA_C-linearis_contig95.16976.1 ID=mRNA_C-linearis_contig95.16976.1|Name=mRNA_C-linearis_contig95.16976.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at C-linearis_contig95:261033..263122- (Chordaria linearis ClinC8C monoicous)
ATGCTTGACGCTGGAGTCTTTGTGGCGGGATTCGCCCTCGTGGCGTTTGC
GTGGAACTTAGGCCGGATGAACAACGTGATGAAAAAGATGCTTGACGCTG
GAGTCTTTGTGGCGGGATTCGCCCTCGTGGCGTTTGCGTGGAACTTAGGC
CGGATGAACAACGTGATGAAAAAGTGTGAGCTTGAGGGCTGCAAGACGGG
CTGCAAGAGCAACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAGA
ACCTCGAGGACTGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCCT
GTTGCTCGCTGCGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACGA
TCCGGATGGCGACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGCA
ACGTACAGGAGGTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGAC
GGAGACGAAACAAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAAC
CGAACGCGACATCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTCG
AAGGCATGGTGCCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTAC
TACGGACGCGGTCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCAG
CAGCGGCTACAACATGGCCGGTTAGTGTGAGCTTGAGGGCTGCAAGACGG
GCTGCAAGAGCAACGAGGGCTGTCAGAGCAACGACCCCCGCGGCGTGGAG
AACCTCGAGGACTGGAACTGGAACGTTCAGTGCTCTGAAAACGCGGACCC
TGTTGCTCGCTGCGTGCGCAACTCTCACGACTCAAGGGTGTCTATAAACG
ATCCGGATGGCGACGAGTGGAACACAGCAAGAAGCGCCCTCTGCGTGCGC
AACGTACAGGAGGTCGACTTCGGAGCACCTTCAAACGACGCGGATGGAGA
CGGAGACGAAACAAAAACGACGGAATGCTGCGGGGAAGGAGCGCAGCCAA
CCGAACGCGACATCGTGATGTTCAAGGAAGCTAAGCGTCGTGAGCACTTC
GAAGGCATGGTGCCCGGCAGCTTGACCCCCTACCCGTGGCGCAGCATGTA
CTACGGACGCGGTCGTCCTAGGTGCGCCAGGCGGCTCAGCAGCCTCTCCA
GCAGCGGCTACAACATGGCCGGTTAG
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