mRNA_C-linearis_contig93.16915.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16915.1
Unique NamemRNA_C-linearis_contig93.16915.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.590e-23
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   10 GAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 222
            GA A V LPV METCGYLLPLWGYRR AF+E  KA D L+TRE+LLALSW+ AKA+ F A+EQS  VSPLP
Sbjct:  378 GAAAEVPLPVVMETCGYLLPLWGYRRKAFIEGIKACDVLQTRELLLALSWMMAKAKAFPAFEQSRLVSPLP 448
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BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.910e-23
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    7 VGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLALSWLTAKARLFHAYEQSSFVSPLP 222
            +GA A V LPVAMETCG+LLP+WGYRR AF+E  KA D L+TRE+LLALSW+ AKA++F A+EQ+  VSPLP
Sbjct:  107 LGASAEVPLPVAMETCGHLLPMWGYRRKAFIEGIKACDVLQTREVLLALSWMMAKAKVFPAFEQARLVSPLP 178
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE2.590e-2371.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T0_ECTSI3.910e-2368.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:326327..328597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004250.1
Exons3
Model size545
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16915.1prot_C-linearis_contig93.16915.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 326327..328595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.4678488-CDS-C-linearis_contig93:326326..3264091622930796.4678488-CDS-C-linearis_contig93:326326..326409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 326327..326409 +
1690881254.7991185-CDS-C-linearis_contig93:326326..3264091690881254.7991185-CDS-C-linearis_contig93:326326..326409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 326327..326409 +
1622930796.4806366-CDS-C-linearis_contig93:327692..3277471622930796.4806366-CDS-C-linearis_contig93:327692..327747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 327693..327747 +
1690881254.810347-CDS-C-linearis_contig93:327692..3277471690881254.810347-CDS-C-linearis_contig93:327692..327747Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 327693..327747 +
1622930796.4923308-CDS-C-linearis_contig93:328190..3285951622930796.4923308-CDS-C-linearis_contig93:328190..328595Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 328191..328595 +
1690881254.824702-CDS-C-linearis_contig93:328190..3285951690881254.824702-CDS-C-linearis_contig93:328190..328595Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 328191..328595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16915.1

>prot_C-linearis_contig93.16915.1 ID=prot_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=181bp
AGVGAGAVVSLPVAMETCGYLLPLWGYRRSAFLETTKAGDTLETREILLA
LSWLTAKARLFHAYEQSSFVSPLPPEQQLQQQHQHHQQLQPYQHLHHQRQ
PQYLQQAQPQPQPRQQRDCQPQPLPFPTDPSEAPEIVRSARDVFLASLQD
EEQVEQDSWPHKQLHHQQRWQGAGDDNREKG
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mRNA from alignment at C-linearis_contig93:326327..328597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16915.1 ID=mRNA_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2271bp|location=Sequence derived from alignment at C-linearis_contig93:326327..328597+ (Chordaria linearis ClinC8C monoicous)
GCGGGCGTGGGGGCGGGGGCGGTGGTCTCGTTGCCGGTGGCGATGGAGAC
CTGCGGGTACCTGCTGCCGCTCTGGGGGTATAGGTGAGTTTTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GGTTGTTTCGCACGTGAGCTCTCTAGTTCGAAACATCCATCGGGGTCCGC
GGTCACTCTGACCAAGGCAAACCCGTCGCCGCCAAGAAAACGTATGGAAA
CGGTTTGGTGGGTACGCATGGAGGTGGTAAGGGCGGCACTCTGGGTTAAG
GCTAACCAGACAGAGTCGGCTGCAACAACATGTAGACCCACAGAGTCCTT
GTGTACCATAGTTGTTGCCTCGTTTTTTTTTGGGTGTGTGGTTCATGGTG
TTAAGTTTCCCTGACGTCAATTGTGCATGAGTAAATGTGCTTGACGGGAT
GGCGCCGGTGTGTTTGATGCGGGACACAGTTTTATTCTACATCAAGAAGT
ACATCGGGTTTTCTGCCATGCTTCGCCGCACTTTGGCAAAATTCTAGACT
ATTCTAGGGACCCAGCACCGCGAGGCGTGCCGCTCTTCCACGGCATGTAC
ACCATGATGATCGCGTCGACCGAGAGAAGCAGAGCGCGAGATGGAGACGC
CGACGTGATGCGTTTTTTGTGACGTAGTTGCGGGATTGGTCTGTGTTGTC
ATCGCATGGCTCATGGCTCATCGTTCATGAATTCATGGCTCATGACTCGT
GGTTTCTGAGTCATGGCTCATGAGGTGTGTCGGGGTCATGTTAGGGCGTC
TTTATTGCCATACCATGGCTCATATCTCATGGCTCATGAGGAAGCTCGTG
TCGAAAACCGCAGTTGGGGCCCGGGGATAATAAATCGGTTCCTGGTTTGG
ATGAGATGGGTGCATTGCTTGGCTGTCGCGCTTTTCTTCCGACACCTCTC
GCCTCTCTCGGGATTCCGGTGCTCGCCTGACGGTTTGATGCAGGCGGTGC
CTACAGATAACTCCCACCTTCCGTCTCTTTCTCCTCCCCGTCTTATTTCC
GTCTGGCTCCTCTCTTTCCGTGTTTTCTCCCCCATGATTCCGGCGTCCAT
CCTATCCTATCCTATCCTATCCTCGATTTCACACACCCTTTTGACCTATT
CAATGCAGGGTGATGTCGGCTGACACCTCCGCCCCCTCTCTCTCCGCCGC
TCCTTTTGTCTATCTCTGCTGCCTGCCTGTCTGCCTGCCTGGCTCTCTCT
TTCTTTGTTTCCTCCTCACGTGACTGGTCGTCCACTCCCACCCCTTTCCG
ACATGGATGGTGCGGTATGCCGTGCCATCGTTATTGCCGCGTCGTTGCTG
TTGTCGGTGTCACCAGGAGATCAGCGTTTTTGGAAACGACGAAGGCCGGC
GACACTCTTGAGACCCGAGAGGTTGGTATTGTTTTATTTTCGGTTTTCTT
TCGTGCTTGGTTCCGCTCTTGTTCGGTCCCTGCGTCAAAGTGATGACGCC
GGCGGCAACCCTCCCCCTTCAGACGCTGGACTCGGTCGGCACGCTTGTTT
TTTTCGTTTTTGCTGCAATTTTTTCCAACCTTTGCTGTATTTTTGAGCGT
TGACACACCTTTTGAAGCGCACCGCGAACCAGATATATTGGAAAGGCTTT
TTTGAAGCCAGGTCGGGACTTGCATTGGTCGAACATGTCGACCAAACTGC
TGTGGGTGTCACGTGTGTGGCACCCGGAACTGAACTCCACACCCGTCTGC
GGGGATTACTTTTCTTGTAAATCGTACAGATACAACCACCCTTTCCCCCT
TTTGATCTCGCTAAGCTTACGGGGCATTCTGTTGACGATGGCGTGCCCCT
CTCCCCGCTTCCAGATCCTGCTGGCCCTCTCGTGGCTGACGGCGAAAGCT
AGGCTCTTCCACGCGTACGAACAGTCGTCCTTCGTCTCGCCCCTCCCTCC
AGAGCAGCAACTTCAACAGCAGCATCAGCATCATCAACAACTACAACCGT
ACCAACACCTCCATCACCAACGGCAACCGCAATATCTGCAACAAGCCCAA
CCCCAACCCCAACCACGGCAACAGCGGGATTGCCAACCGCAGCCGCTGCC
GTTCCCGACCGACCCCTCCGAGGCGCCAGAGATAGTACGAAGCGCCAGAG
ACGTCTTCTTGGCGTCTCTCCAAGACGAAGAACAGGTAGAACAAGACAGC
TGGCCTCACAAGCAACTGCATCACCAGCAGCGGTGGCAGGGGGCGGGGGA
CGACAACAGAGAAAAGGGGCT
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Coding sequence (CDS) from alignment at C-linearis_contig93:326327..328597+

>mRNA_C-linearis_contig93.16915.1 ID=mRNA_C-linearis_contig93.16915.1|Name=mRNA_C-linearis_contig93.16915.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at C-linearis_contig93:326327..328597+ (Chordaria linearis ClinC8C monoicous)
GCGGGCGTGGGGGCGGGGGCGGTGGTCTCGTTGCCGGTGGCGATGGAGAC
CTGCGGGTACCTGCTGCCGCTCTGGGGGTATAGGCGGGCGTGGGGGCGGG
GGCGGTGGTCTCGTTGCCGGTGGCGATGGAGACCTGCGGGTACCTGCTGC
CGCTCTGGGGGTATAGGAGATCAGCGTTTTTGGAAACGACGAAGGCCGGC
GACACTCTTGAGACCCGAGAGGAGATCAGCGTTTTTGGAAACGACGAAGG
CCGGCGACACTCTTGAGACCCGAGAGATCCTGCTGGCCCTCTCGTGGCTG
ACGGCGAAAGCTAGGCTCTTCCACGCGTACGAACAGTCGTCCTTCGTCTC
GCCCCTCCCTCCAGAGCAGCAACTTCAACAGCAGCATCAGCATCATCAAC
AACTACAACCGTACCAACACCTCCATCACCAACGGCAACCGCAATATCTG
CAACAAGCCCAACCCCAACCCCAACCACGGCAACAGCGGGATTGCCAACC
GCAGCCGCTGCCGTTCCCGACCGACCCCTCCGAGGCGCCAGAGATAGTAC
GAAGCGCCAGAGACGTCTTCTTGGCGTCTCTCCAAGACGAAGAACAGGTA
GAACAAGACAGCTGGCCTCACAAGCAACTGCATCACCAGCAGCGGTGGCA
GGGGGCGGGGGACGACAACAGAGAAAAGGGGATCCTGCTGGCCCTCTCGT
GGCTGACGGCGAAAGCTAGGCTCTTCCACGCGTACGAACAGTCGTCCTTC
GTCTCGCCCCTCCCTCCAGAGCAGCAACTTCAACAGCAGCATCAGCATCA
TCAACAACTACAACCGTACCAACACCTCCATCACCAACGGCAACCGCAAT
ATCTGCAACAAGCCCAACCCCAACCCCAACCACGGCAACAGCGGGATTGC
CAACCGCAGCCGCTGCCGTTCCCGACCGACCCCTCCGAGGCGCCAGAGAT
AGTACGAAGCGCCAGAGACGTCTTCTTGGCGTCTCTCCAAGACGAAGAAC
AGGTAGAACAAGACAGCTGGCCTCACAAGCAACTGCATCACCAGCAGCGG
TGGCAGGGGGCGGGGGACGACAACAGAGAAAAGGGG
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