mRNA_C-linearis_contig93.16900.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16900.1
Unique NamemRNA_C-linearis_contig93.16900.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig93.16900.1 vs. uniprot
Match: A0A6H5JN80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN80_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.440e-50
Identity = 91/129 (70.54%), Postives = 106/129 (82.17%), Query Frame = 1 
Query:  685 SRIFPLPEQTVFLPSFDNEDMTKMRRNDRFAYGSVATMRVVMNRVAMLLEAGAGKYRGNIDSEWVLGHHLLEHQISVHMLDLLVTRIRLTRDIPFYDHRLVKEACQSGEDPMACSIMEADFKFPADGGA 1071
            +R  PLPE TVFLPSFD E   ++R+NDRFAYGS+ TMRVVMNR+A LL A  G+  G IDSE+VLGHHL ++ ISV MLDLL+TRIRLTRDIP YDHRLV+EAC SGEDPMAC +++A FKFP DGGA
Sbjct:  238 TRTLPLPEHTVFLPSFDAELAAQVRKNDRFAYGSMTTMRVVMNRLATLLAADTGQLTGEIDSEYVLGHHLRKNDISVQMLDLLLTRIRLTRDIPMYDHRLVEEACLSGEDPMACRMVDAGFKFPVDGGA 366
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN80_9PHAE1.440e-5070.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:192760..196663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1973
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16900.1prot_C-linearis_contig93.16900.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 193402..195767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.7240453-UTR-C-linearis_contig93:192759..1934011622930797.7240453-UTR-C-linearis_contig93:192759..193401Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 192760..193401 +
1690881255.430287-UTR-C-linearis_contig93:192759..1934011690881255.430287-UTR-C-linearis_contig93:192759..193401Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 192760..193401 +
1622930797.8000307-UTR-C-linearis_contig93:195767..1966631622930797.8000307-UTR-C-linearis_contig93:195767..196663Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 195768..196663 +
1690881255.4745507-UTR-C-linearis_contig93:195767..1966631690881255.4745507-UTR-C-linearis_contig93:195767..196663Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 195768..196663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.7429152-CDS-C-linearis_contig93:193401..1935601622930797.7429152-CDS-C-linearis_contig93:193401..193560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 193402..193560 +
1690881255.4433162-CDS-C-linearis_contig93:193401..1935601690881255.4433162-CDS-C-linearis_contig93:193401..193560Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 193402..193560 +
1622930797.7611778-CDS-C-linearis_contig93:194922..1950331622930797.7611778-CDS-C-linearis_contig93:194922..195033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 194923..195033 +
1690881255.4538288-CDS-C-linearis_contig93:194922..1950331690881255.4538288-CDS-C-linearis_contig93:194922..195033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 194923..195033 +
1622930797.7802207-CDS-C-linearis_contig93:195602..1957671622930797.7802207-CDS-C-linearis_contig93:195602..195767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 195603..195767 +
1690881255.4636827-CDS-C-linearis_contig93:195602..1957671690881255.4636827-CDS-C-linearis_contig93:195602..195767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 195603..195767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16900.1

>prot_C-linearis_contig93.16900.1 ID=prot_C-linearis_contig93.16900.1|Name=mRNA_C-linearis_contig93.16900.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=145bp
MSHHNKTTMKNVERSRIFPLPEQTVFLPSFDNEDMTKMRRNDRFAYGSVA
TMRVVMNRVAMLLEAGAGKYRGNIDSEWVLGHHLLEHQISVHMLDLLVTR
IRLTRDIPFYDHRLVKEACQSGEDPMACSIMEADFKFPADGGAS*
back to top

mRNA from alignment at C-linearis_contig93:192760..196663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16900.1 ID=mRNA_C-linearis_contig93.16900.1|Name=mRNA_C-linearis_contig93.16900.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3904bp|location=Sequence derived from alignment at C-linearis_contig93:192760..196663+ (Chordaria linearis ClinC8C monoicous)
TGCACCTACCGCGCCGTCAAGGTTTGTTGCACTCAAAAGTGCCGCCGAGT
TCATCTTAACCTTGCCCTTTTACCGAACCCCCAAGCCGAGTGCGCTTGAA
CGTTGATCGTTGGCAAGGGGGTTGGGTGTTCTACGAAGCAGGCGGGGCAC
GCATGGTGATGCTCTCGTTGAGCGTTAATTGTATGGATGGCCAAGTGGGC
ATAAAAAGGAACGGTAAGTCGTTCTTCCCGCCGCCGCATCGGATGGTCGC
GGGAAGCTTCGCCGCACACAGAGTGGAACGTCAGGCAAAACTGGCCCTTT
TTTGGAGTTTCGTTTTGTCAGTTGCGCAAGAACGGCGACAGTGGCGAACA
TGTTGCGCTTCGGTCACGGTGTGCGTGGTCGCCTCGTGTGTGCGTGTCTG
CTACGTTTGTTGTCGGTATTTTGTGCCAACAATGTATGCGCGCCTAGAAA
TTGCACATGGTTGTTCGGCCGCTTGTCTGTTGTAGGCATCACCCCGCAAA
TTGTTTTGCAAGCACCGCAGAGTAGAACCTTTGCAAACCACGGGCTTCAA
TCTCTGCTAAGGTGGTGGAACAGGAAAGGGAAGCTTCTGGCGCCGTTTTG
CTACATGCATAGCTCGAGACCCTTGGTGTGGCACCTTCAAACATGTCTCA
CCACAACAAAACGACGATGAAAAATGTTGAACGCAGCCGGATATTCCCGC
TGCCGGAGCAGACGGTCTTTCTCCCGAGCTTCGACAACGAGGACATGACG
AAGATGAGAAGAAACGATCGCTTCGCGTACGGATCGGTGGCGACCATGAG
GGTGAGGGTAACGACCGCCTGTTTGTTGGATTTCTTTTGGCCTTTGTTTT
TGCAACCGAGGTAGCGGTGGGTGTCACTGCTGTGTAGAGGGTGAGAGCGA
TGACGGTCGGGTATCCTCCAGTCCCTAGCTTAGCTATTGTGTGTGCAGCA
GTTACAGTTACGAGTACACAAGGCGCCCGCGGACAAAAAACGTAGAATAT
GGGTCGAGGCTCATTTTATTTCTTCGTCGCCACTACTGTCGAGCGTAGGG
CTTTGGATAGGGTCTAGTATAGGATAGGATCCAAGTTCTTAGCCCGCGTT
TCTTATTTTTCGCGGAAATCTGAGCCAATTTTCTGACCAGGGGGTTTTCC
TTACAGCGAGCGCCCTCAGTAGTGTTGCTTGTTCTCGCCACGTGTTCACA
GAAGTGACAGTAGTGACAGCAGAAAATGGTACAGCAGTGGGTTGACCCAC
TCTCATCCGCTGGTGATTTTACCACCACCCACCACCCACCACCCACCTCC
CCCGCCGAGAGCGTTGTGTTCGTGATGGATGTCGATCTCCAAAACATGAT
CAGCGCCACAAGCACCAAGAATAACGAAATCGCCCTACGGTTAGGGCCGG
TCAAGCTGACTGGTACAAGCAGTTTGTTCATTTGTTTTGTCTTCTGGTAG
ACTGGCGGAGACACCCTTTCCCCTCAGAGGCACGTTCCCTGCCGCAAGGG
AGAAGCTTGTTGGAAACGGCTCTCATAGCTCTACCCCACTTTCCCGAAGG
TGTTCGAGATATTCGAGTTTCGTCGCTCCTCGTTGGTACTTCGCAGGAGG
CATTTGCTTCACAGAATATATACTTCGAAGTGTATACATACGCTGTATCC
AATCACAGCGCCCGCGGTACTTATTCCTGAATTCTCGGCGGAGCGTACAT
ACCCTGTTGTGCCGCCACACCTCCGGTAGTCGGGCGTTTTATCTCCCAGC
CAAGTTTTTTGTTCCTCTTTTTTTTTGTCTCATGTAGGTAGCTCGTGCCA
TTGATTTTGTCGTTGCGATGAACGCATGGCCCCACTGCTTGTTGTTGTTT
CTTGGTGCTTTTGTGTTTTTGTGTTTGGCGTTTTCCAGTTTCTCCCGTCT
TTTAGTTCTCGTTCTCGTTGGTTCTCTTTTACATGTTGCACCGTTTGGTC
TGTTTCCCGTGTGCAAGGGGTGATGTACTCGACATTGACCCTCCCTGTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTATCTATCTCTCTCTCTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGCGTTG
TGAGTTTCGCTCGCTTGTTCTTGCGCACAACTAATAACGTGCCTGTCCCT
GATTTTTCATCAGGTGGTCATGAACCGCGTCGCCATGCTGCTGGAGGCGG
GTGCCGGGAAGTACCGCGGCAATATAGATTCAGAGTGGGTACTAGGGCAC
CATCTCCTCGAACATCAAATATCGGTGAGATTTCGCCGCCGCCGCTGCCG
CCGCTGCATCAGATTCTGGGTACTTTCTTCGTTTGGGTGCTTGGAAAAAG
TGGTTTGGGCACCTTTTTCTATTCTGCATGTTTTAGTTTGGCTTTCCCGC
ATGTTTTGGGTGCTGTGGGAGATTGGCCATGTATAAGCCAACTCTGTCTG
TTCTGTGTTATTTTGCTCCTCCGGTTATCTGTTCTTCTAGAGTGATGAAT
TTTTGTTGAAGTCTTGTTTTTGGTTGCACTTCTGCAGCTGTGCTTTTTTG
TTGCTCGTTTCGCCGTGTTCGCTCGCTCCCGCCCTGTTTCCGTTTGTGCA
GCATGCTTTGCGCGCTGTTTGTTATCTTGTGGCTGTGCGATTCGACGTAC
TCCATGCTTTGTTCGAAGTATCGAATCGATTGCCACACTGCTATCAGCAG
CCTTGAAACAGGCTGAGTTTATTTGAAAAAATATGGCCTGCTGCCTGCTT
GACTCCCACGCGAAGGAGACGCCCACACATCGTGGCAGGACAACGTTTGC
CTGGGCCCAACTCAACTTGTTCCGCCTGCTGTCCTGCCGACAGGTGCACA
TGCTAGACCTGCTCGTGACGAGAATACGCTTGACTCGCGACATACCCTTC
TACGACCACCGCCTCGTAAAAGAGGCGTGTCAATCTGGCGAGGACCCCAT
GGCGTGCAGCATCATGGAGGCAGACTTTAAGTTTCCTGCCGATGGCGGGG
CTTCGTGAGGCACTTCACCGCTGTTGCGGCGGTGCGTGAGGAAGTTCATC
GCGCCTGGAGCGCAGCCGCCTGGCGTTTTCGTGTAGGTGTGATGGAGAGC
GCTTGGGGTCCTTAGATGTAGCATGGTAAGCCTGTGTTTCGTTGACGTGA
GTTTTTGAGCCCTTCCCTTCCCGTGGTGGTCCACGATCACTGCGTGTTTA
GTCTAATCTGGTGTTTCGAGTTTGATCTGGGGCGTCAGAAATCAACGCAC
CTGATTGGCGCGTGCTGACAACAATCGTAGGTGGCCTTGAGTTTCCCGTC
GACTTGTGTGGTTCGTGGCTTTATGGTGCCGCTCTGCCGTCAGGATTCTT
GTCTGCTGATGGTTGCGAGTCGCTCGGAAAGCCCACATTACATGTTGTTT
CATCGACCTTGAAATCTGTGCTCCGATGGTGCGCGGTGTTGTATCCGTCC
GTTGCCATTATGTTTTTTTTATTCATCGTCTATCTGCCGTGTTTTGTATC
CGTGCGCTCTGTATTGTTGTCAGTTTTGAACAAGCTCGCCGAGGCAAGGT
TGGGGGGCTTGCTCGAAGCACTTGAGACAAAACTTGATTCCCCATTTTTT
ATTGTTCGCAAGAAGGGGGTGCGTGTATTTTCTTTTGGAATGTGGACCAC
TGCTGTCGCTGTCGGGAAAGGCGATCATTTCGTTGCTTTCTGGTGTGACA
GGTTCTAGTCGTTAGGGTTACGGAACCCCCCTCTCTATTTCTGATACATA
TGGTCCGTCAGGGACTAATTTTCCACATTTCTTCCACCTGCACTTAAATA
CACAGCCGGTCGCCCCGGTGGCCTAGTGGTATAACCTCGAACCCAACCCA
CTAGCAGCAAAGTCTGGAGTTCAATTCCAAGCAAATGTGATTATTTTGCG
ACTT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig93:192760..196663+

>mRNA_C-linearis_contig93.16900.1 ID=mRNA_C-linearis_contig93.16900.1|Name=mRNA_C-linearis_contig93.16900.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at C-linearis_contig93:192760..196663+ (Chordaria linearis ClinC8C monoicous)
ATGTCTCACCACAACAAAACGACGATGAAAAATGTTGAACGCAGCCGGAT
ATTCCCGCTGCCGGAGCAGACGGTCTTTCTCCCGAGCTTCGACAACGAGG
ACATGACGAAGATGAGAAGAAACGATCGCTTCGCGTACGGATCGGTGGCG
ACCATGAGGATGTCTCACCACAACAAAACGACGATGAAAAATGTTGAACG
CAGCCGGATATTCCCGCTGCCGGAGCAGACGGTCTTTCTCCCGAGCTTCG
ACAACGAGGACATGACGAAGATGAGAAGAAACGATCGCTTCGCGTACGGA
TCGGTGGCGACCATGAGGGTGGTCATGAACCGCGTCGCCATGCTGCTGGA
GGCGGGTGCCGGGAAGTACCGCGGCAATATAGATTCAGAGTGGGTACTAG
GGCACCATCTCCTCGAACATCAAATATCGGTGGTCATGAACCGCGTCGCC
ATGCTGCTGGAGGCGGGTGCCGGGAAGTACCGCGGCAATATAGATTCAGA
GTGGGTACTAGGGCACCATCTCCTCGAACATCAAATATCGGTGCACATGC
TAGACCTGCTCGTGACGAGAATACGCTTGACTCGCGACATACCCTTCTAC
GACCACCGCCTCGTAAAAGAGGCGTGTCAATCTGGCGAGGACCCCATGGC
GTGCAGCATCATGGAGGCAGACTTTAAGTTTCCTGCCGATGGCGGGGCTT
CGTGAGTGCACATGCTAGACCTGCTCGTGACGAGAATACGCTTGACTCGC
GACATACCCTTCTACGACCACCGCCTCGTAAAAGAGGCGTGTCAATCTGG
CGAGGACCCCATGGCGTGCAGCATCATGGAGGCAGACTTTAAGTTTCCTG
CCGATGGCGGGGCTTCGTGA
back to top