mRNA_C-linearis_contig92.16882.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.160e-56 Identity = 105/173 (60.69%), Postives = 129/173 (74.57%), Query Frame = 1
Query: 982 FFDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVVVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLVEG 1500
FFD E L + WH+AT V VRFRGHKGDQ+++G+ VTRVR+V GA SQIGAGGGAVA+LVELM+CH+ALP APLCS+R + V GY +AL A QI+E AG +PK GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTRNN+ D VS KL +G
Sbjct: 119 FFDGED-VLAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTRNNMVDVDMVSRKLAKG 288
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE) HSP 1 Score: 215 bits (548), Expect = 3.040e-56 Identity = 110/207 (53.14%), Postives = 139/207 (67.15%), Query Frame = 3
Query: 369 SSCRDVVALRFQ*GGLGAESRRSLYVGIGRELVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYFHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATIPRGETLASTWGEGGRMLWLCLALSYLLLARSEEMFASSASGIHPVHCLRRGDVAFF 986
S R +R + GG RRSLY + E VR+SVA SS+RTY SGWR+W AFR +IGE +L GD A AL+ FVAWC + +GN A TISGKLAAVQYFHRV+ LE+P APL+ +L G + H+ GTK R R+PV+W T+ G+ L ++WG GGR+LWLCL LSY +ARS+E+ A+ + H VHCLRR DV FF
Sbjct: 536 SEPRSRALMRVEPGG-----RRSLYRRLSGEYVRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFF 737
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 168 bits (425), Expect = 6.000e-42 Identity = 95/169 (56.21%), Postives = 114/169 (67.46%), Query Frame = 1
Query: 985 FDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVVVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKL 1491
F R R+L M W QA RVE+RFRGHKGDQ Q G R RD V G RS A GGAVAL+V +SCH LP SAPL SYR EV VL Y +AL+A R+I+E +G +PK F LHSLRIGGA+ +AAGG + +RV++REGRWK S + K YT NN +D+ VS L
Sbjct: 275 FFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSYRSGQEVK--VLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYTVNNSEDSQRVSRTL 439
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 134 bits (338), Expect = 4.880e-31 Identity = 72/191 (37.70%), Postives = 114/191 (59.69%), Query Frame = 3
Query: 462 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYFHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATIPRGETLASTWGEGGRMLWLCLALSYLLLARSEEMFASSASGIHPVHCLRRGDVAFF*-QRRAGVDVDAVAPS 1031
+V+ SV ++ + Y++ W++W F G G +L L AA I+ L+ F+A + NQ T+ G LAAV++FH++ G E+PTS L+ A KG+ + VG K ++RLP+ W+ + +G S + EGGR++WL LAL+Y LL R+ E+FA + +HP CL R + F+ R G++ A+A S
Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADS 191
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE) HSP 1 Score: 123 bits (309), Expect = 7.200e-30 Identity = 61/106 (57.55%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 1177 MSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLV 1494
M+CH+ALP APLCS R + V GY +AL A RQI+E AG DPK GLHSLRIG T +AAGG +PDR +REGRWK+ S +LK TRNN+ D VS KL
Sbjct: 1 MACHLALPEDAPLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTRNNMVDVDMVSRKLA 106
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.040e-21 Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 3
Query: 462 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYFHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATIPRGETLASTWGEGGRMLWLCLALSYLLLARSEEMFASSASGIHPVHCLRRGDVAFF 986
L VA S+ TY++ W+ WV +R + + D +++ A L ++A+ +GN+ TI+GKL AV+Y+H+ G+++P RA+K + T+ RMR P++W + G A+ WGEGGR+LWL LA+SY + R E+FA IH + RG+VAF+
Sbjct: 9 LSTVGVAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVAFW 183
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5L127_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L127_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.480e-16 Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 3
Query: 636 NQAGTISGKLAAVQYFHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATIPRGETLASTWGEGGRMLWLCLALSYLLLARSEEMFASSASGIHPVHCLRRGDVAFF 986
NQ+ T+ G LAA++YFH+++AG E+PTS V K +++ H TKP +R P+ I G A T G + W+ +ALSY LL R+ E++A +H CL RG++ FF
Sbjct: 10 NQSQTVKGYLAAIKYFHKLDAGWELPTSHFRVVAVGKAIDRLHARAETKPLVRQPLTVPMIITGRERAQT-NAFGLVTWMGIALSYFLLCRASELWAYQNGLVHADFCLTRGNLVFF 125
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.940e-16 Identity = 57/111 (51.35%), Postives = 68/111 (61.26%), Query Frame = 3
Query: 3 LAEWPRERTFASEKELR*LIGKLLHLCTIVRIGKFFVRRMLLQLGLSPIE------TNKFGKGSGAR-RIGLGEEFHADLAFWRLLVDGGLGSTRGT-LSAPLIWSFPQPP 311
LAEWP ER A+ E+R L+GKLLHLC +VR GKFFVRR+L QLGL P++ T G R R+ LG EFH DLAFWR ++ G L APL+ SF Q P
Sbjct: 723 LAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGLPPMKAGGDAGTGVMVGGKHRRGRVRLGREFHEDLAFWRKVMAMATGPDGIVKLEAPLLCSFLQAP 833
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 7.950e-13 Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 1165 LVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTRNNLQDASAVSSKLV 1494
+VEL+S + LP APL ++ G+ + +A A RQ++ LAG P+ + LHSLRIGGAT +AAGG P+ V+ REGRW +S S + Y RN DAS VS L
Sbjct: 1 MVELLSLYTFLPSHAPLVAFGV-GQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAGGASPE-VLRREGRWSGES-SHQCYVRNVGGDASWVSEVLA 107
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.480e-9 Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 1000 RELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVVVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRKKGEVGTVVLGYRRALKAFRQIIELAG 1308
R+L + +A RVEVRFR KGDQ ++G+ TR R G + GGGAV +++EL+SC LP SAPL ++ GE V R A +A RQ++ LAG
Sbjct: 228 RQLPPERRGEADRVEVRFRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGT-GEGRWSVWTRRHATEALRQVVSLAG 326 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig92.16882.1 >prot_C-linearis_contig92.16882.1 ID=prot_C-linearis_contig92.16882.1|Name=mRNA_C-linearis_contig92.16882.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=165bp MSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVVVGARSQIGAGGGAVback to top mRNA from alignment at C-linearis_contig92:434067..436000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig92.16882.1 ID=mRNA_C-linearis_contig92.16882.1|Name=mRNA_C-linearis_contig92.16882.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1934bp|location=Sequence derived from alignment at C-linearis_contig92:434067..436000+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig92:434067..436000+ >mRNA_C-linearis_contig92.16882.1 ID=mRNA_C-linearis_contig92.16882.1|Name=mRNA_C-linearis_contig92.16882.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at C-linearis_contig92:434067..436000+ (Chordaria linearis ClinC8C monoicous)back to top |