mRNA_C-linearis_contig91.16835.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16835.1
Unique NamemRNA_C-linearis_contig91.16835.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 1.220e-98
Identity = 258/794 (32.49%), Postives = 354/794 (44.58%), Query Frame = 1
Query:    1 FEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLLHKI-KERHGVLTGWFYDLRLLIEPSTWVFTKDSPPHAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYPMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGKPTALGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQRPDGPVKRTGPL*NRWTIVPSCAGGMKMSIESTASAS----------------CQIMTSTSTPGRMINLRSFSACSGVWTTQAPVTTTRATSCNWLWTLFG*LRGVGWSIA*RRSAFPSPTLPASRRKRSWFSRICP-----------QRLYA*GTGRCCAISSLRFRRPSSSASSKK*TQPLA*VPGCGTGGCRESWIWATSPGSGLCHPSMASCGLASAPSAPS*KAIKSTACALR*TSRS*TKVPPRL*IRWTLTARRRTGGGAQRSGGRQDSRNCR*RSGCALRVSRWGXXXXXXXXXXXL-LCRLLKMTEAEPTVFNPSTVTGSACAWVLKNCKGGRSISKCPWYGMSLAEVSARVRDLRDPRGQLEMEESAPLSTRGVTPVDRRHAFNPHPIGEKWSEQKRHFDEGISLSKNRHDKLMAFIDGERDSRHQEVALDFPPPIVRED 2295
            FE R   V +VFDG PPPAK  T   RRE R+   + AR L    G   +++KL + AC+F  R  A IAT LR  I+G +  APGEADPQ+ V ++   A GA+V VY NDSDL VLGVR LL ++ K   G L G     RLL +P+ W F +    H +LRQLHG+    DE    TP   P A R R + + ++ GNDFAKF+NVGP+ AA+LA    +       ++ F+ VV  L + ++  S+E D+P  R   E +LR  H MF   VVW P +G LQH SGA + E+IT         GT   S +A  +      P  G EW+PPLG A  + Q       R      +    P  A     +  S AS S                    T   T   +  LR F +              +A        +   +R  G          P P L +   K +      P            R Y     +   +  +   +  +   S+   + +  V   G      S  WA     G+        G ++  S  + K  +     LR         PP               G   RS     +         AL     G           L L RLL+M+E +   FNP+T TG AC W++++ KG RS  +C  YGMS++  +  VR +RDP+G +  ++   +   GV P+DR + FNPHP G  W+ +K HFD G  +SK + DKLMAF++ ER S HQEV LD+ PP VRE+
Sbjct:   31 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGEADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTA-RRRLLLFAIIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGYLASRLLVESREEDTPAVRREFEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTREEITRH------AGTSELSPLASRVARRDACPLTGREWDPPLGTAQAKGQAVGEDAGR-----QKKRATPETASTRPPNASSRASRSRGPQDTNNYREHGFSRLPAETEDYTKLTVPKLREFLSVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMTDLPATGLRIKEWSAMRRYLPEISKAVILRFMGEVKKLAGEGSRLWYRSVQRVLDMGN----LSRFWAVPAAGGIMW-----IGTSAGASFSADKEYR-IRIKLR-VEEVDESAPPTXXXXXXXXXXXXVVGNDPRSAQTLVALEVI----AALCECPAGIKGGCSHAAMALFLGRLLQMSEEQLATFNPTTCTGMACRWIMQHGKGSRSAKQCELYGMSMSVGTTVVRSVRDPKGNVGWDDDKQVHASGVPPIDRMNQFNPHPTGGMWAARKVHFDAGEDISKLKRDKLMAFVNHERRSDHQEVCLDYLPPRVREE 797          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.410e-97
Identity = 266/819 (32.48%), Postives = 359/819 (43.83%), Query Frame = 1
Query:    1 FEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLLHKIKERH-GVLTGWFYDLRLLIEPSTWVFTKDSPPHAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYPMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQP-VVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGKPTALGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQA--PTELQRPDGPVKRTGPL*NRWTIVPSCAGGMKMSIESTASASCQIMTSTS--------TPGR--------MINLRSFSAC-------------SGVWTTQAPVTTTRATSCNWLWTLFG*LRGV-GWSIA*RRSAFPSPTLPASRRKRSWFSRICPQRLYA*GTGRCCAISSLRFRRPSSSASSKK*TQPLA*VPGCGTGGCRESWIWATSPGSGLCHPSMASCGLASAPSAPS*KAIKSTACALR*TSRS*TKVPPRL*IRWTLTARRRTGGGAQRSGGRQDSRNCR*RSGCALRVSRWGXXXXXXXXXXXLLC--------------------RLLKMTEAEPTVFNPSTVTGSACAWVLKNCKGGRSISKCPWYGMSLAEVSARVRDLRDPRGQLEMEESAPLSTRGVTPVDRRHAFNPHPIGEKWSEQKRHFDEGISLSKNRHDKLMAFIDGERDSRHQEVALDFPPPIVRED 2295
            FE RG  V +V DG  PPAK  T + RR  RE    +AR L    G + +++K  + AC F  R VAR+ATLLRP I G +  AP EADPQI + ++     G  V VY NDSDL VLGVR LL  ++    G LTG     RL+ +P  W F  D+  +AFLRQLHGLP       +   PL   A R R   +  +AGNDFA F+N+GP+ AAK+A   ++    G   VV FE +V +L   VV+ SKE ++P A    E+KLR AH MF +AVVW+P    L+H SGA S+  IT  TG      TL FSS+A  I  G VSPT G+ W PPL +     EL+R         P                    +  S +     + +         PG         +  LR F +               G     A         C  L +       V   S    +     P LP  R + S F  +   + +     +   +  L    P S   S+   + +  V   G      + +W     +GL +  M                  S   +   T     ++  R+               A  S   ++ R         +   +W             LC                    RLL+MTE E   FNPST TG AC+W+++NCKGGRS  +C  YG  L+  +  VR +RDPR   + +  A +   GVT +DR   FNPHP G KW E K HFD G   S+ + DKL+AF+D  R   ++ VA+D+ PP+VRED
Sbjct:   70 FESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLP-RGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFELIEPDPRGTAAVVSFEALVGNLARIVVQDSKEEETPAALEEAEEKLRRAHNMFHNAVVWDPLKNTLRHFSGAASSLAITKDTG------TLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQELRRATRRPGSQPPXXXXXXXXXXXXXXXXXXXXNKRSRNAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMVMPELPGPRSRISGFEHL---QQHLPEMSKSVILQFLGQVNPISGEGSRVWYRGMQKVMDMGN----LNRLWGVPAKNGLMYLGM------------------SAGASFSDTKTYEVRIQLRV---------EALDESAHPSAAEEEGRG--------VESGQWPRPPLVALGVVAALCECPAGISGGCSHTAMVLFLTRLLQMTEDELATFNPSTCTGRACSWIMQNCKGGRSGEQCSLYGEPLSHGTNVVRKMRDPRRGFDDDLLAKVQ--GVTAIDRMQHFNPHPSGGKWDELKLHFDAGKDFSRFKMDKLLAFVDCARGPDNRAVAMDYLPPLVRED 837          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 4.640e-73
Identity = 157/344 (45.64%), Postives = 195/344 (56.69%), Query Frame = 1
Query:    1 FEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLLHKI-KERHGVLTGWFYDLRLLIEPSTWVFTKDSPPHAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYPMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDITNATGKPTALGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQ 1029
            FE R   V +VFDG PPPAKG T   RRE RE   + AR L    G   +V+KL + AC+F  R  A IAT LR  I G +  APGEADPQ+ V ++   A G +V VY NDSDL VLGVR LL ++ K   G L G     RLL +P+ W F +    H +LRQLHG+    DE    TP   P A R R V + M+ GNDFAKF+NVGP+ AA+LA            ++ F+ VV  L + ++  SKE D+P A   VE +LR  H MF   VVW P +G LQH SGA ++EDIT  TG      TL  S +A  +  G V P  G EW+PPLG A  + Q
Sbjct:  276 FEDRNFLVTVVFDGQPPPAKGGTSQHRRERREKSAQQARALHAAGGCPMEVNKLASAACAFDGRVTAEIATRLRARIGGEVYIAPGEADPQLVVFQDIHLATGPNVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTA-RRRLVLFAMIVGNDFAKFKNVGPVTAARLAFVDAASGVWATSLLPFDAVVGDLASRLLVESKEEDTPAAWREVEIRLRACHTMFTQPVVWNPLSGELQHLSGAPTSEDITRHTG------TLELSPLASGVARGDVCPLTGGEWDPPLGTAQAKGQ 612          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 9.590e-63
Identity = 114/200 (57.00%), Postives = 146/200 (73.00%), Query Frame = 3
Query: 1101 RDENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLGFSALGSFLKGDKEYRVRIKMNVEELDESAAPS 1700
            +D N +REHGFS+LP    D+  W   +L+EFLSVFRCLD AG S + K+ L Q+A DVVR+I+ CG+++   AFR PV +L+SFEEKE  + PDLP   +R+++W  +R +LPEISKAVI RFL EVN  A   SR+WYR +QRV+DMGNLSR WAVP   G+MW+G SA  SF   DKEYRVRIK+ VE +DE+A P+
Sbjct:  335 QDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDTAGTSGFKKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVISRFLGEVNKLAGEGSRLWYRSLQRVLDMGNLSRFWAVPAAGGIMWIGTSAGASF-SADKEYRVRIKLRVEGVDENAPPT 533          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 9.010e-58
Identity = 105/188 (55.85%), Postives = 135/188 (71.81%), Query Frame = 3
Query: 1101 RDENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLGFSALGSFLKGDKEYRVRIKM 1664
            +D N +REHGFS+LP    D+  W   +L+EFLSVFRCLDN G S  NK+ L Q+A DVVR+I+ CG+++   AFR P  +L+SFEEKE  + PDLP   +R+++W  +R +LPEISKAVILRF++EVN  A   SR+WYR +QRV+DMGNLSR W V     +MW+G SA  SF   DKEYRVRIK+
Sbjct:  360 QDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDNTGTSGLNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPFPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVILRFMREVNKLAGKGSRLWYRSLQRVLDMGNLSRFWTVQAAGSIMWIGTSAGASF-SADKEYRVRIKL 546          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.280e-53
Identity = 95/171 (55.56%), Postives = 129/171 (75.44%), Query Frame = 3
Query: 1104 DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLGFSAL 1616
            D N + +HGFS+LP  + DFN W   QL+EFLSVFRCLD+AG S Y K  LV+LA  +V MIK+CG++N   AFR PV +L+SF++KE++  P+LP    R+  +E L+  LPE+SK+VIL+FL++VNP +   SRVWYRGMQ+V DMGNL+RLW VP ++G+M+LG S+L
Sbjct:  113 DTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLVELAGQIVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRVWYRGMQKVTDMGNLNRLWGVPAKNGLMYLGMSSL 283          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.610e-50
Identity = 110/258 (42.64%), Postives = 149/258 (57.75%), Query Frame = 1
Query:    1 FEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVR-KLLHKIKERHGVLTGWFYDLRLLIEPSTWVFTKDSPPHAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYPMVAGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRLSKEGDSPEAR 771
            FE R   V +VFDG PPPAK  T   RRE R+   + AR L    G   +++KL + AC+F  R  A IAT LR  I+G +  APG+ADPQ+ V ++   A GA+V VY NDSDL VLGVR +L+  +K   G L G     RLL +P+ W F +    H +LRQLHG+    DE    TP L     R R + + ++ GNDFAKF+NVGP+ AA+LA    +       ++ F+ VV  L + ++  S+E D+P AR
Sbjct:    4 FEDRNFLVTVVFDGRPPPAKSGTSQHRRERRQKSAQQARALHDAGGCPVEINKLASAACAFDGRVTAEIATRLRARIRGEVYIAPGKADPQLVVFQDIHLATGANVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTP-LPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARLAFVDTESGVWAASLLPFDAVVGDLASRLLVESREEDTPAAR 260          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.010e-46
Identity = 92/167 (55.09%), Postives = 123/167 (73.65%), Query Frame = 3
Query: 1104 DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLG 1604
            D N +R+HGFS+LP  + DFN W   QL+EFLSVFRCLD+AG S Y K  L +LA  VV MIK+CG++N   AFR PV +L+SF++KE++  P LP    R+  +E L+  LPE+SK+VIL+FL++VNP +   SRV   GMQ+VMDMGNL+RLW VP ++G+M+LG
Sbjct:  225 DTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPGLPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRV---GMQKVMDMGNLNRLWGVPAKNGLMYLG 388          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7G2U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U9_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.630e-31
Identity = 59/113 (52.21%), Postives = 87/113 (76.99%), Query Frame = 3
Query: 1284 MIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQEVNPTASLSSRVWYRGMQRVMDMGNLSRLWAVPPQHGVMWLGFSALGS 1622
            MIK+CG++N   AFR P+ +L+SF++KE++  P+LP    R+  +E  +  LPE+SK+VIL+F ++VNP +   SRVWYRGMQ+VMDMGNL+RLW VP ++G+M+LG S +G+
Sbjct:    1 MIKKCGLLNSNQAFRHPIPDLSSFQDKERMAMPELPGPRSRISGFEHPQQHLPEMSKSVILQFPRQVNPISGEGSRVWYRGMQKVMDMGNLNRLWRVPAKNGLMYLGMSFVGA 113          
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.740e-18
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 3
Query: 1104 DENVHREHGFSKLPDNDVDFNSWKNDQLKEFLSVFRCLDNAGASNYNKSNLVQLAVDVVRMIKRCGMVNRLTAFRIPVANLTSFEEKEKLVFPDLPPASVRVRDWEVLRDFLPEISKAVILRFLQ 1478
            D N + +HGFS+LP  + DFN W   QL+EFLSV                       VV MIK+CG++N   AFR PV +L+SF++KE++  P+LP    R+  +E L+  LPE+SK+VIL+FL+
Sbjct:  227 DTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV----------------------QVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLR 329          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G0K2_ECTSI1.220e-9832.49Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KFX7_9PHAE1.410e-9732.48Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE4.640e-7345.64Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZG7_ECTSI9.590e-6357.00Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
D7FZU5_ECTSI9.010e-5855.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Y3_ECTSI1.280e-5355.56Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G4G5_ECTSI6.610e-5042.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM4_ECTSI2.010e-4655.09Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G2U9_ECTSI1.630e-3152.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L7_ECTSI6.740e-1842.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:479961..483511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.8
Seed ortholog evalue3.6e-54
Seed eggNOG ortholog2880.D7G0K2
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons4
Model size2295
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16835.1prot_C-linearis_contig91.16835.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 481943..483370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.006411-UTR-C-linearis_contig91:479960..4806461622930786.006411-UTR-C-linearis_contig91:479960..480646Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 479961..480646 -
1690881249.2792892-UTR-C-linearis_contig91:479960..4806461690881249.2792892-UTR-C-linearis_contig91:479960..480646Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 479961..480646 -
1622930786.0187776-UTR-C-linearis_contig91:481175..4815821622930786.0187776-UTR-C-linearis_contig91:481175..481582Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 481176..481582 -
1690881249.29014-UTR-C-linearis_contig91:481175..4815821690881249.29014-UTR-C-linearis_contig91:481175..481582Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 481176..481582 -
1622930786.034031-UTR-C-linearis_contig91:481808..4819421622930786.034031-UTR-C-linearis_contig91:481808..481942Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 481809..481942 -
1690881249.2990596-UTR-C-linearis_contig91:481808..4819421690881249.2990596-UTR-C-linearis_contig91:481808..481942Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 481809..481942 -
1622930786.0908308-UTR-C-linearis_contig91:483370..4835111622930786.0908308-UTR-C-linearis_contig91:483370..483511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 483371..483511 -
1690881249.3522909-UTR-C-linearis_contig91:483370..4835111690881249.3522909-UTR-C-linearis_contig91:483370..483511Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 483371..483511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.0485992-CDS-C-linearis_contig91:481942..4820921622930786.0485992-CDS-C-linearis_contig91:481942..482092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 481943..482092 -
1690881249.316131-CDS-C-linearis_contig91:481942..4820921690881249.316131-CDS-C-linearis_contig91:481942..482092Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 481943..482092 -
1622930786.0699615-CDS-C-linearis_contig91:482593..4833701622930786.0699615-CDS-C-linearis_contig91:482593..483370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 482594..483370 -
1690881249.33746-CDS-C-linearis_contig91:482593..4833701690881249.33746-CDS-C-linearis_contig91:482593..483370Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 482594..483370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16835.1

>prot_C-linearis_contig91.16835.1 ID=prot_C-linearis_contig91.16835.1|Name=mRNA_C-linearis_contig91.16835.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=309bp
MAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEE
TIRARGADVMVYGNDSDLAVLGVRKLLHKIKERHGVLTGWFYDLRLLIEP
STWVFTKDSPPHAFLRQLHGLPPEPDEKFISTPPLGPEAVRERFVHYPMV
AGNDFAKFQNVGPIAAAKLALPRVQDRASGQPVVRFEEVVESLVAGVVRL
SKEGDSPEARAAVEKKLRVAHAMFRHAVVWEPDTGLLQHRSGAQSTEDIT
NATGKPTALGTLRFSSIACDIVWGTVSPTDGEEWNPPLGQAPTELQRPDG
PVKRTGPL*
back to top

mRNA from alignment at C-linearis_contig91:479961..483511-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16835.1 ID=mRNA_C-linearis_contig91.16835.1|Name=mRNA_C-linearis_contig91.16835.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3551bp|location=Sequence derived from alignment at C-linearis_contig91:479961..483511- (Chordaria linearis ClinC8C monoicous)
TTCGAGAAACGAGGCCTCGCTGTCTGGTTGGTGTTTGACGGCTGTCCACC GCCGGCTAAGGGTTGCACGGGGGACGGACGCAGAGAGACGCGAGAGGGAT ACGAGAGGGACGCTCGCCGCCTGCTAGGAGAAGCTGGAGCCATGGCGCAA GTCCACAAGCTGTGTGCTCAAGCATGCTCTTTCGGCCCGCGTACGGTAGC TCGGATCGCGACTCTTCTGCGGCCTATGATAAAAGGCCGTATCATGACCG CTCCAGGCGAGGCTGATCCTCAGATTGCCGTAGTCGAGGAAACGATAAGG GCGCGGGGGGCAGACGTCATGGTCTACGGAAATGACAGCGACTTGGCTGT CTTGGGTGTCCGGAAGCTCCTCCATAAAATTAAAGAACGGCATGGTGTGC TGACCGGATGGTTTTACGACTTGAGGTTACTTATCGAACCCTCTACGTGG GTCTTCACGAAGGACTCCCCCCCGCATGCCTTCCTTCGTCAGCTCCACGG TCTACCGCCAGAGCCGGACGAGAAGTTCATCAGCACACCTCCATTGGGCC CTGAAGCTGTGCGAGAACGATTCGTCCACTACCCGATGGTGGCAGGAAAC GACTTCGCCAAATTTCAAAACGTCGGTCCTATTGCAGCGGCAAAGCTAGC CCTGCCACGCGTCCAGGACAGGGCGTCTGGCCAGCCGGTCGTGCGGTTTG AGGAAGTAGTAGAGAGCCTTGTAGCAGGAGTCGTGCGCCTGTCGAAGGAG GGGGATTCCCCTGAAGCCCGCGCTGCGGTGGAGAAGAAGTTGCGGGTGGC GCACGCGATGTTCCGTCATGCAGTCGTGTGGGAGCCTGACACCGGGCTGC TGCAGCATCGCTCTGGCGCTCAATCCACGGAGGACATCACCAACGCCACA GGTAAGCCAACAGCTCTGGTATATATTCCGTACTCCGCATGACGCTACAA ACGACCCCACTTCCCTCCGTGAAGCGTATCTATGTAAGAGTAGGGTAACT GATGCAGACGGTCGGATACGCTCTCACCCAAAACTATGTAGTTTTATTTT ACCAACAACAAATTCTCTTTTGTGATCGGGAGGAGGAGTGTTCCAGCGAG CCGCCCCCCACTAAACGCTGTGCAGCATCATACATACGAGGATAATAGCC GACTAAAGCACGCCCTTTCCGCAGTCTGCTCGTCTAGGCAAGAGTACGGT ACGTCGAGCCAAGCGCGAGGCTGTGGCGGACCAAAGTTATAGGTGCACGC GAGTCTGTGGCAATACCAAAGTTATCGAAAAATCGCTGCCTCAATTCCCC CGGTCTGTTCGCCTGAATTTGGATGGTATGATTATCGAGTCTACATGTAA ATGCCGGTGGACCTGCACCACAGGCATGTATGGCTGACCCTTTCCATTCG ACCACCGCGTGACGCACAGGGGACCCTGCGCTTTTCTTCGATCGCTTGCG ACATCGTGTGGGGAACGGTGTCGCCGACCGACGGCGAAGAGTGGAACCCT CCCCTGGGGCAGGCGCCTACCGAACTACAGCGGCCCGACGGCCCGGTAAA GCGGACGGGGCCCCTCTAGAATCGCTGGACGATCGTCCCGTCATGCGCCG GCGGGATGAAAATGTCCATCGAGAGCACGGCTTCAGCAAGCTGCCAGATA ATGACGTCGACTTCAACTCCTGGAAGAATGATCAACTTAAGGAGTTTCTC AGCGTAAGTGATTCGAAATAGTCACGCGGAATTGTTGGCTGGTTGAATGA AGTACCACACCCTCTCGAAAAGTACGTACGGCAGTATCCGCGACAGCAGG TGTTTACAGGTACCGATATACAACCGCCGTTCACCACGCGCCTTATCACG ACGTTAGAGGACGACAACTCATGCACTCACTCACGAATGAACGCCCATGC AACGCACGATCTCGTTCGGTGTCCCGTAGGTGTTCAGGTGTTTGGACAAC GCAGGCGCCAGTAACTACAACAAGAGCAACCTCGTGCAACTGGCTGTGGA CGTTGTTCGGATGATTAAGAGGTGTGGGATGGTCAATCGCCTGACGGCGT TCCGCATTCCCGTCGCCAACCTTACCAGCTTCGAGGAGAAAGAGAAGCTG GTTTTCCCGGATTTGCCCCCAGCGTCTGTACGCGTGAGGGACTGGGAGGT GTTGCGCGATTTCCTCCCTGAGATTTCGAAGGCCGTCATCCTCCGCTTCC TCCAAGAAGTAAACCCAACCGCTAGCCTGAGTTCCAGGGTGTGGTACAGG GGGATGCAGAGAGTCATGGATATGGGCAACCTCTCCAGGCTCTGGGCTGT GCCACCCCAGCATGGCGTCATGTGGCTTGGCTTCAGGTGAGAGGTGCACT ACGGGTTCTGTATTTTAATTGCCCCAGCTACACTCGTGACTTGCTGTATT CAAATGACGCAGTCCCCTCGTCCTGTCATTGTGCGTTTTTATTTTATTTG TCGCGTGTTGATGCAGCCGCGGTGGCACAACAGAGAGTCGACGCCGGTGT TGATTTACAGTGTACCATTTAGCTCCTGTGGTGCGTGCCTCCGGAATTGT GGTGATATGATTGTTCAGCCACACCACACACACACACCCCTACCCGGTGC CGTTTAGGACCAATTGCGCGTTTTTGAAATAGGCCCGAATTAACATGACT AGGCAGCACATCGTGTGCAACAGAAGAGCTCCGTGCGAGGCGAGGTGTCG TTTTCGCCTGAATGGGACCGGGCACTGATTTTTGCGCTGGAGGCTGAGTT TGCTCTTCAGAAATCGACAAAACCGCCGAAAGGTGCCGCCCTCTCCCTCT CACACCCCGTCATCCACCCCGACCCCGATCTGTGCTCGTCGCCCCTGGTG GTTTCTTAAAATCAGCGCCCTCGGCTCCTTCTTGAAAGGCGATAAAGAGT ACCGCGTGCGCATTAAGATGAACGTCGAGGAGCTAGACGAAAGTGCCGCC CCGTCTTTAAATCCGCTGGACACTAACAGCGAGGAGGAGGACGGGGGGGG GGGCGCAGAGAAGCGGGGGGAGGCAAGACTCCAGGAATTGCCGTTGACGT AGTGGCTGCGCTCTGCGAGTGTCCCGCTGGGGGGGGGGGGGGGGTCACCA TGCGGCAATGGTGCTGCTGCTTTGCAGATTGTTGAAGATGACGGAGGCCG AGCCTACCGTATTCAACCCTTCCACCGTCACAGGCAGTGCGTGCGCTTGG GTGTTGAAAAACTGCAAAGGGGGGAGGTCGATATCTAAGTGCCCCTGGTA TGGCATGTCTCTAGCAGAGGTTAGCGCCCGCGTAAGGGATTTGCGCGACC CCAGAGGCCAGTTGGAAATGGAAGAGTCCGCCCCTCTTTCCACACGAGGA GTAACACCCGTCGACAGAAGGCATGCATTCAACCCGCACCCTATCGGAGA GAAGTGGTCGGAGCAGAAACGTCACTTTGACGAGGGAATTAGTCTGAGTA AGAATCGCCACGATAAGCTGATGGCCTTCATAGACGGCGAGAGAGACTCG AGGCACCAAGAAGTTGCCTTAGACTTCCCCCCGCCGATCGTGCGAGAGGA C
back to top

Coding sequence (CDS) from alignment at C-linearis_contig91:479961..483511-

>mRNA_C-linearis_contig91.16835.1 ID=mRNA_C-linearis_contig91.16835.1|Name=mRNA_C-linearis_contig91.16835.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at C-linearis_contig91:479961..483511- (Chordaria linearis ClinC8C monoicous)
ATGGCGCAAGTCCACAAGCTGTGTGCTCAAGCATGCTCTTTCGGCCCGCG
TACGGTAGCTCGGATCGCGACTCTTCTGCGGCCTATGATAAAAGGCCGTA
TCATGACCGCTCCAGGCGAGGCTGATCCTCAGATTGCCGTAGTCGAGGAA
ACGATAAGGGCGCGGGGGGCAGACGTCATGGTCTACGGAAATGACAGCGA
CTTGGCTGTCTTGGGTGTCCGGAAGCTCCTCCATAAAATTAAAGAACGGC
ATGGTGTGCTGACCGGATGGTTTTACGACTTGAGGTTACTTATCGAACCC
TCTACGTGGGTCTTCACGAAGGACTCCCCCCCGCATGCCTTCCTTCGTCA
GCTCCACGGTCTACCGCCAGAGCCGGACGAGAAGTTCATCAGCACACCTC
CATTGGGCCCTGAAGCTGTGCGAGAACGATTCGTCCACTACCCGATGGTG
GCAGGAAACGACTTCGCCAAATTTCAAAACGTCGGTCCTATTGCAGCGGC
AAAGCTAGCCCTGCCACGCGTCCAGGACAGGGCGTCTGGCCAGCCGGTCG
TGCGGTTTGAGGAAGTAGTAGAGAGCCTTGTAGCAGGAGTCGTGCGCCTG
TCGAAGGAGGGGGATTCCCCTGAAGCCCGCGCTGCGGTGGAGAAGAAGTT
GCGGGTGGCGCACGCGATGTTCCGTCATGCAGTCGTGTGGGAGCCTGACA
CCGGGCTGCTGCAGCATCGCTCTGGCGCTCAATCCACGGAGGACATCACC
AACGCCACAGGTAAGCCAACAGCTCTGATGGCGCAAGTCCACAAGCTGTG
TGCTCAAGCATGCTCTTTCGGCCCGCGTACGGTAGCTCGGATCGCGACTC
TTCTGCGGCCTATGATAAAAGGCCGTATCATGACCGCTCCAGGCGAGGCT
GATCCTCAGATTGCCGTAGTCGAGGAAACGATAAGGGCGCGGGGGGCAGA
CGTCATGGTCTACGGAAATGACAGCGACTTGGCTGTCTTGGGTGTCCGGA
AGCTCCTCCATAAAATTAAAGAACGGCATGGTGTGCTGACCGGATGGTTT
TACGACTTGAGGTTACTTATCGAACCCTCTACGTGGGTCTTCACGAAGGA
CTCCCCCCCGCATGCCTTCCTTCGTCAGCTCCACGGTCTACCGCCAGAGC
CGGACGAGAAGTTCATCAGCACACCTCCATTGGGCCCTGAAGCTGTGCGA
GAACGATTCGTCCACTACCCGATGGTGGCAGGAAACGACTTCGCCAAATT
TCAAAACGTCGGTCCTATTGCAGCGGCAAAGCTAGCCCTGCCACGCGTCC
AGGACAGGGCGTCTGGCCAGCCGGTCGTGCGGTTTGAGGAAGTAGTAGAG
AGCCTTGTAGCAGGAGTCGTGCGCCTGTCGAAGGAGGGGGATTCCCCTGA
AGCCCGCGCTGCGGTGGAGAAGAAGTTGCGGGTGGCGCACGCGATGTTCC
GTCATGCAGTCGTGTGGGAGCCTGACACCGGGCTGCTGCAGCATCGCTCT
GGCGCTCAATCCACGGAGGACATCACCAACGCCACAGGTAAGCCAACAGC
TCTGGGGACCCTGCGCTTTTCTTCGATCGCTTGCGACATCGTGTGGGGAA
CGGTGTCGCCGACCGACGGCGAAGAGTGGAACCCTCCCCTGGGGCAGGCG
CCTACCGAACTACAGCGGCCCGACGGCCCGGTAAAGCGGACGGGGCCCCT
CTAGGGGACCCTGCGCTTTTCTTCGATCGCTTGCGACATCGTGTGGGGAA
CGGTGTCGCCGACCGACGGCGAAGAGTGGAACCCTCCCCTGGGGCAGGCG
CCTACCGAACTACAGCGGCCCGACGGCCCGGTAAAGCGGACGGGGCCCCT
CTAG
back to top