mRNA_C-linearis_contig91.16796.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE) HSP 1 Score: 349 bits (896), Expect = 1.600e-102 Identity = 386/751 (51.40%), Postives = 415/751 (55.26%), Query Frame = 1
Query: 1615 MVEIMERRREEVVEWSPDMELEGCDAEKAAALLLAVAPRHRSFDATQQQEASGTVGGPGTGSTPSNTNGAAENSSGGINAPASGSPADNGGGLFGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXGESNMKREFGGIMNGALLSSSPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-AGMRLQSLADLATQACDSCRELQTMSEDNGAASNNNSHHPNHXSXXXXSYSSNSNHARGSPSSPSSGTPPRSSFANSFSPKPHMSPRHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ERGGPRTRFD-------DEXXXXXARAARAPRGRRNRPRSVSLPEGMELQARALSGSYSSGRRNGGRIDSIKEELEGHDGAP-GTRSRTWRGDSSGGAASSPRGE--------------WGGSVEDAEALIGLARRRVGWGVEAEESXXXXXXXXXX---------------------------------------------------GDGAICVSLPHMLSK--YADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKAMKSARAAAAGGGVVADVEADASMDMELLAGEN-SSETGSXXXXXXXG--ATAEGFDDGSEEA---MVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVSPKEPLKRVRRHSIAY 3615
MVEIM+R RE VEWSPDMELEG DAEKAAALLLAVAPR+RSFDATQ+ E G G +G XXXXX XXXXXXXXXXXX GES +KREFGG +NGAL ++S R A MRLQSLADLATQ ELQTM + + + H H + NS S S+ TPP FSPK H+SPR S XXXXXXXXXXXXXXXX XXXXX XXXXX ERG PR+R + XXX A A RG R+RPRSVS+PEGMELQARA SG YSSGRR GRIDSIKEELEGH+G+ GTRSRTWR S G +S GE WGG+VEDAE LIGLAR+RVGWGVEAEE XXXXXX G+ A+ S S+ YADMYNKNGRIGIYTRQEREAII+RFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQR ALKLKQK +KSARAAAA G SMDMELL GE SSETGSXXXXXXX TAEGFD+GSEEA MVEXXXXXXXXXXXXXX VSPKEPLKRVRRHSIAY
Sbjct: 1 MVEIMDRGRE--VEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQKPEGPGPAG-------------------------TTGXXXXXXXXXXXXXXXXXXGGAVPPEGAXXXXXXXXXXXXSGESALKREFGGTVNGALPNASYRDSAAAALPGGDPREAAVSIASSPSSFSLSTSPRPRSASSGGVASMRLQSLADLATQ------ELQTMGDVDETDTPGIHGHRRHQQHQRSLSNGNSQ-------SSSARTPP---LPAGFSPKRHLSPRLSGGGGXXXXXXXXXXXXXXXXVSALSSAAXXXXXCSAPLPPARAAPXXXXXLRERGVPRSRHERXXXXXXXXXXXHAAARAEGGRGMRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEGHEGSTHGTRSRTWRAGS--GGSSGFDGEXXXXXXXXXXXKSGWGGTVEDAETLIGLARQRVGWGVEAEEGSGADXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETALSASPCRTCSRSEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGAT-------SMDMELLGGEEMSSETGSXXXXXXXXXXVTAEGFDEGSEEAEDAMVEXXXXXXXXXXXXXXAHARRG----------------VSPKEPLKRVRRHSIAY 683
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.770e-61 Identity = 300/603 (49.75%), Postives = 326/603 (54.06%), Query Frame = 1
Query: 1615 MVEIMERRREEVVEWSPDMELEGCDAEKAAALLLAVAPRHRSFDATQQQEASGTVGGPGTGSTPSNTNG-------------------------AAENSSGGINAPASGSPADNGGGLFGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXGESNMKREFGGIMNGALLSSSPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-----AGMRLQSLADLATQACDSCRELQTMSE--DNGAASNNNSHHPNHXSXXXXSYSSNSNHARGSPSSPSSGTPPRSSFANSFSPKPHMSPRHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGGPRTRFD-------DEXXXXXARAARAPRGRRNRPRSVSLPEGMELQARALSGSYSSGRRNGGRIDSIKEELEGHDGAPGTRSRTWRGDSSGGAASSPRGEWGGSVEDAEALIGLARRRVGWGVEAEESXXXXXXXXXXGDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKAMKSARAAAAGGG 3306
MVEIM+ RRE VEWSPDMELEG DAEKAAALLLAVAPR+RSFDATQ E GPG P+ T G A + G P+ G+ XXXXXXXXXXX GES +KREFGG++NGAL ++S R XXXXXXXXXXXXXXXX A MRLQSLADLATQ ELQTM + + A + X XXXX R TPP + FSPK H+SPR S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ERG PR+R + XXXXX RGRR+RPRSVS+PEGMELQARA SG YSSGRR GRIDSIKEELE + L R + ++YADMYNKNGRIGIYTRQEREAII+RFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKA+KSARAAA G
Sbjct: 1 MVEIMDSRRE--VEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPE------GPG----PAGTTGXXXXXXXXXXXXXXXXXXXXXXXXXVAHVGTEGGTVPSEGA--------------------------GXXXXXXXXXXXSGESALKREFGGMLNGALPNTSYRDSAAAALSGGDPRAATVSTASSPSXXXXXXXXXXXXXXXXXXIGGGASMRLQSLADLATQ------ELQTMCDVDETDTAGAHGXXXXXXXXXXXXXXXXXXXXXR---------TPPAPA---GFSPKRHLSPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLR-----------ERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE---------------------------------------VCLLDRNI------------------------------PTTRYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSARAAAVASG 467
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA) HSP 1 Score: 138 bits (348), Expect = 3.270e-30 Identity = 100/221 (45.25%), Postives = 118/221 (53.39%), Query Frame = 1
Query: 2653 AARAPRGRRNRPRSVSLPEGMELQA--------RALSGSYSSGRRNGGRIDSIKEELEGHDGAPGTRSRTWRGDSSGGAASSPRGEWGGSVEDAEALIGLARRRVGWGVEAEESXXXXXXXXXXGDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKAMKSARAA 3291
A+ PR RR RPRS S PEGME A G Y R I++IKEE GD ++S + G +A G A V+LPH+LSKY D+YN+NGRIGIYT QEREAII+RFK KR RRVW+KKIRYNCRKNLADKRLR+KGRFVKM+P QRAAL+L++ A A A
Sbjct: 180 ASPLPRTRRARPRSQSNPEGMERSAGWRGRGTGELGGGLYLGAGRRSPDIEAIKEE----------------GDEDCDRSASAXXXXXXXXXXXXXXXXXXXXXIADGDDAA------------GSAATAVTLPHLLSKYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQRAAEDGANGA 372
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.540e-27 Identity = 63/80 (78.75%), Postives = 75/80 (93.75%), Query Frame = 1
Query: 3019 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKL 3258
++LPH+L KYAD+YN++GRIGIYT QEREAII+R++ KR RRVW+KKIRYNCRKNLADKRLRVKGRFVKM+P QRAAL+L
Sbjct: 272 LTLPHLLHKYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: K8YW04_NANGC (CCT domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC) HSP 1 Score: 118 bits (296), Expect = 5.900e-24 Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 1
Query: 3025 LPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQ 3240
LPHML+KY+D+YNK+GRIGIYTR ER+AII+RF+ KR RRVWKKKIRY+CRKNLADKR+RVKGRFVK+ P++
Sbjct: 441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV) HSP 1 Score: 113 bits (283), Expect = 8.720e-24 Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1
Query: 3025 LPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALK 3255
LPH LSKY ++YNKNGRIGIYT ER AII++F KR RRVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ A LK
Sbjct: 215 LPHSLSKYKEVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.330e-23 Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 3025 LPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQK 3267
LPH LSKY ++YNKNGRIG+YT ER AII++F KR RRVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ AAL +QK
Sbjct: 281 LPHSLSKYKEIYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A4D9CLM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLM4_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.000e-23 Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 1
Query: 3025 LPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQ 3240
LPHML+KY+D+YNK+GRIGIYTR ER+AII+RF+ KR RRVWKKKIRY+CRKNLADKR+RVKGRFVK+ P++
Sbjct: 799 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 870
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.760e-23 Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1
Query: 3001 GDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKAMK 3276
GD + ++LPH L KY ++YN+NGRIGIYT ER AII+RF +KR RRVW KKIRY CRKNLAD+RLRVKGRFVK S ++ A +L+ + K
Sbjct: 32 GDKGV-LTLPHSLGKYKEVYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQARVEK 122
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Match: A0A7S1VKC2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKC2_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.440e-22 Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query: 3019 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIISRFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSP 3234
++LPH LSKY ++YNKNGRIGIYT ER AIISRF+ KR RRVW KKIRY+CRKNLAD+RLRVKGRFVK P
Sbjct: 237 LTLPHCLSKYKNVYNKNGRIGIYTPAERAAIISRFQDKRSRRVWNKKIRYSCRKNLADRRLRVKGRFVKRPP 308 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig91.16796.1 >prot_C-linearis_contig91.16796.1 ID=prot_C-linearis_contig91.16796.1|Name=mRNA_C-linearis_contig91.16796.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=668bp MVEIMERRREEVVEWSPDMELEGCDAEKAAALLLAVAPRHRSFDATQQQEback to top mRNA from alignment at C-linearis_contig91:50266..57097+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig91.16796.1 ID=mRNA_C-linearis_contig91.16796.1|Name=mRNA_C-linearis_contig91.16796.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6832bp|location=Sequence derived from alignment at C-linearis_contig91:50266..57097+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig91:50266..57097+ >mRNA_C-linearis_contig91.16796.1 ID=mRNA_C-linearis_contig91.16796.1|Name=mRNA_C-linearis_contig91.16796.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4008bp|location=Sequence derived from alignment at C-linearis_contig91:50266..57097+ (Chordaria linearis ClinC8C monoicous)back to top |