mRNA_C-linearis_contig90.16754.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16754.1
Unique NamemRNA_C-linearis_contig90.16754.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: D7G6I6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I6_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.130e-57
Identity = 117/241 (48.55%), Postives = 161/241 (66.80%), Query Frame = 2 
Query:  392 MDQFLAPMPPGREESRHLFVTTHKWTVSALDRTRKTVAPKPQP---EGSRKRAKRGANGLSGSNPKGISAAARVKEFPNDSLDVSAGSLFCCACSSRLGTRRSTIMSHIGLTAAGTHIAKPNKHMKKMVLFNANKAETPQRMQRFSEFC-ERNNTYGKNLQPENSDQRCTIIRQLMSAGVLLSKLDDLVPMFNGLRANMCGSSKGKEYIGFIAEEEMRRTREEVAGKCVSVAIDCTPFSGT 1102
            MD+F+ P  PG  E+ H+FV  +K   +A  R R++VA  P     + S  +  RG NGLS SNPK ISA++R + FP + L VSAG+L+C  C+ RLGT  STI +H GL   G+H A+PN+HM+K+ +  A + E P R  RF+++C +R   YGK + PE +D+RC +I Q+M AG+ LSKLD L  MF  L A+M GSSK KEYIGFI EE++R  R+++ GK + +AID TPF+GT
Sbjct:    1 MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMVGSSKSKEYIGFINEEQIRSIRQDILGKDIGIAIDGTPFNGT 241
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A7D9HA11_PARCT (DNA-directed primase polymerase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HA11_PARCT)

HSP 1 Score: 97.1 bits (240), Expect = 5.350e-20
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 2 
Query: 1232 FKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRSFWVDNQTT-----LPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFN 1597
            FKAAR+ +     +  P   D   L  FPF+  D+I +L+ ELPAYL  AA+  A   +  +W ++ +      LP W S V+K+ LVQPSSA  ERVFS+LN  FG+QQ  AL DLVETT+M + N
Sbjct:   10 FKAARLFSPFKVNEIQPTAKDVDDLMAFPFLV-DEIDHLKAELPAYLALAADVNADVNILEWWKNHSSPGSDSCLPHWSSAVQKVLLVQPSSATAERVFSMLNQSFGEQQQNALEDLVETTIMLQCN 135
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.180e-19
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 2 
Query: 1133 RNHVIVCLKDIREYATRQFGSGADVKFRQELDLFKAARIINFAVARQGNPDEVDPGVLS-IFPFISNDDITNLRKELPAYLTAAANARATYPVRSFWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFN 1597
            R   +  +  +R+Y   + G   + K R  + +FKAARI+NF V      +E D  VL+ +FPF++   +  L  E   Y TAAA   +   + +FW DN+  LPAWY+V + + L+QPSSA MERVFS+L     ++Q   L+D +  + + ++N
Sbjct:  352 REKALFDMHAVRQYVFDRIGDHPEAKERNAIRVFKAARILNFRVVTGHGVEESDVHVLAEVFPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKYN 507
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A6S7GZC6_PARCT (RNA-directed DNA polymerase from transposon BS n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GZC6_PARCT)

HSP 1 Score: 99.4 bits (246), Expect = 8.210e-18
Identity = 63/156 (40.38%), Postives = 89/156 (57.05%), Query Frame = 2 
Query: 1145 IVCLKDIREYATRQFGSGADVKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRSFWVDNQTT-----LPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFN 1597
            I CL+   +Y   + G+ + +     +  FKAAR+ +     +  P   D   L  FPF+  D+I +L+ ELPAYL  AA+  A   +  +W ++ +      LP W S V+K+ LVQPSSA  ERVFS+LN  FG+QQ  AL DLVETT+M + N
Sbjct:  514 IGCLQAGLDYFQNKLGNDSQLP----VAAFKAARLFSPFKVNEIQPTAKDVDDLMAFPFLV-DEIDHLKAELPAYLALAADVNADVNILEWWKNHSSPGSDSCLPLWSSAVQKVLLVQPSSATAERVFSMLNQSFGEQQQNALEDLVETTIMLQCN 664
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.510e-17
Identity = 55/171 (32.16%), Postives = 91/171 (53.22%), Query Frame = 2 
Query: 1154 LKDIREYATRQFGSGADVKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRSFWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFNDTDRTKGTAAQVADLVEDTVIDG 1666
            L  +R YA  + GS ++ K  + + LFKAA++ +F   +       +   LS+FPF+ +D +  L KE   +  AA +    Y   +FW DN+  LP W+ +V  + L+QPSSA MERVFS+L   F ++Q    +D +  + + +++   R +G+   +    ED   DG
Sbjct:  241 LDALRRYAHERIGSHSEAKLAETMKLFKAAKLTDFTYMKTHKYSNDEIRSLSVFPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYS---RGRGSNRGLRQASEDAPEDG 408
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A2B4S6X8_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S6X8_STYPI)

HSP 1 Score: 93.6 bits (231), Expect = 1.920e-17
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 2 
Query: 1205 VKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRS--FWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFNDTDRT 1612
            V+F   +  FKAAR+      +   P  V    L  F FI++ ++  L +ELP YL  A  A          +W  +   LP W + V+K+ LVQPSSA  ERVFS+L N F KQQ  AL + VET+VM R+ND  RT
Sbjct:  129 VQFHNVVRAFKAARLCCPVQVQALRPTAVSVQDLKQFSFITDAEVVQLVEELPNYLATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYNDNKRT 266
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.530e-17
Identity = 47/148 (31.76%), Postives = 82/148 (55.41%), Query Frame = 2 
Query: 1154 LKDIREYATRQFGSGADVKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRSFWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFN 1597
            L  +R+YA  + G  +  +  + L++FKAA++ +F   +     +     L + PF+    +  L KE   +  AA++  A Y   +FW DN+  LP W+++V  + L+QPSSA MERVFS+L   F ++Q    +D +  +V+ ++N
Sbjct:    5 LDPLRQYAHDKIGRHSQARDAKTLEVFKAAKLTDFTFMKGRKYSDDTIRTLKVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYN 152
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: UPI000C051ABC (uncharacterized protein LOC111330574 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C051ABC)

HSP 1 Score: 93.6 bits (231), Expect = 7.800e-17
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 2 
Query: 1205 VKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRS--FWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFNDTDRT 1612
            V+F   +  FKAAR+      +   P  V    L  F FI++ ++  L +ELP YL  A  A          +W  +   LP W + V+K+ LVQPSSA  ERVFS+L N F KQQ  AL + VET+VM R+ND  RT
Sbjct:  215 VQFHNVVRAFKAARLCCPVQVQALRPTAVSVQDLKQFSFITDAEVVQLVEELPNYLATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYNDNKRT 352
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A2B4RB71_STYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RB71_STYPI)

HSP 1 Score: 93.6 bits (231), Expect = 4.940e-16
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 2 
Query: 1205 VKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRS--FWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFNDTDRT 1612
            V+F   +  FKAAR+      +   P  V    L  F FI++ ++  L +ELP YL  A  A          +W  +   LP W + V+K+ LVQPSSA  ERVFS+L N F KQQ  AL + VET+VM R+ND  RT
Sbjct:  494 VQFHNVVRAFKAARLCCPVQVQALRPTAVSVQDLKQFSFITDAEVVQLVEELPNYLATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYNDNKRT 631
[Close]
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Match: A0A2B4S074_STYPI (Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S074_STYPI)

HSP 1 Score: 93.6 bits (231), Expect = 8.260e-16
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 2 
Query: 1205 VKFRQELDLFKAARIINFAVARQGNPDEVDPGVLSIFPFISNDDITNLRKELPAYLTAAANARATYPVRS--FWVDNQTTLPAWYSVVEKLWLVQPSSAMMERVFSVLNNVFGKQQTVALNDLVETTVMGRFNDTDRT 1612
            V+F   +  FKAAR+      +   P  V    L  F FI++ ++  L +ELP YL  A  A          +W  +   LP W + V+K+ LVQPSSA  ERVFS+L N F KQQ  AL + VET+VM R+ND  RT
Sbjct:  957 VQFHNVVRAFKAARLCCPVQVQALRPTAVSVQDLKQFSFITDAEVVQLVEELPNYLATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYNDNKRT 1094
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6I6_ECTSI4.130e-5748.55Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A7D9HA11_PARCT5.350e-2045.67DNA-directed primase polymerase n=1 Tax=Paramurice... [more]
A0A6H5KSI8_9PHAE8.180e-1935.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6S7GZC6_PARCT8.210e-1840.38RNA-directed DNA polymerase from transposon BS n=1... [more]
A0A6H5JZH8_9PHAE1.510e-1732.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2B4S6X8_STYPI1.920e-1741.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=St... [more]
A0A6H5JEX4_9PHAE5.530e-1731.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C051ABC7.800e-1741.30uncharacterized protein LOC111330574 n=1 Tax=Stylo... [more]
A0A2B4RB71_STYPI4.940e-1641.30Dimer_Tnp_hAT domain-containing protein n=2 Tax=St... [more]
A0A2B4S074_STYPI8.260e-1641.30Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:45811..48739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.6
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog400682.PAC_15703819
Hectar predicted targeting categoryother localisation
EggNOG OGs2F3H4@1,2T4GH@2759,3AMYP@33154,3C10E@33208
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_006430.1
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons3
Model size2354
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16754.1prot_C-linearis_contig90.16754.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 45983..47496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.7008324-UTR-C-linearis_contig90:45810..459821622930769.7008324-UTR-C-linearis_contig90:45810..45982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 45811..45982 +
1690881240.544852-UTR-C-linearis_contig90:45810..459821690881240.544852-UTR-C-linearis_contig90:45810..45982Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 45811..45982 +
1622930769.7708917-UTR-C-linearis_contig90:47496..487391622930769.7708917-UTR-C-linearis_contig90:47496..48739Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 47497..48739 +
1690881240.5870702-UTR-C-linearis_contig90:47496..487391690881240.5870702-UTR-C-linearis_contig90:47496..48739Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 47497..48739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.7256045-CDS-C-linearis_contig90:45982..466991622930769.7256045-CDS-C-linearis_contig90:45982..46699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 45983..46699 +
1690881240.5568576-CDS-C-linearis_contig90:45982..466991690881240.5568576-CDS-C-linearis_contig90:45982..46699Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 45983..46699 +
1622930769.7419362-CDS-C-linearis_contig90:47143..473561622930769.7419362-CDS-C-linearis_contig90:47143..47356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 47144..47356 +
1690881240.5665643-CDS-C-linearis_contig90:47143..473561690881240.5665643-CDS-C-linearis_contig90:47143..47356Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 47144..47356 +
1622930769.7581594-CDS-C-linearis_contig90:47487..474961622930769.7581594-CDS-C-linearis_contig90:47487..47496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 47488..47496 +
1690881240.576977-CDS-C-linearis_contig90:47487..474961690881240.576977-CDS-C-linearis_contig90:47487..47496Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 47488..47496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16754.1

>prot_C-linearis_contig90.16754.1 ID=prot_C-linearis_contig90.16754.1|Name=mRNA_C-linearis_contig90.16754.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=313bp
MATTAATPAPPAPAAASAALSAHVSTHTTDGTPVLELVVVDPAVAPTAAA
APAPAPTPAPDPTTSPTPAPGGAMDQFLAPMPPGREESRHLFVTTHKWTV
SALDRTRKTVAPKPQPEGSRKRAKRGANGLSGSNPKGISAAARVKEFPND
SLDVSAGSLFCCACSSRLGTRRSTIMSHIGLTAAGTHIAKPNKHMKKMVL
FNANKAETPQRMQRFSEFCERNNTYGKNLQPENSDQRCTIIRQLMSAGVL
LSKLDDLVPMFNGLRANMCGSSKGKEYIGFIAEEEMRRTREEVAGKCVSV
AIDCTPFSGTVG*
back to top

mRNA from alignment at C-linearis_contig90:45811..48739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16754.1 ID=mRNA_C-linearis_contig90.16754.1|Name=mRNA_C-linearis_contig90.16754.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2929bp|location=Sequence derived from alignment at C-linearis_contig90:45811..48739+ (Chordaria linearis ClinC8C monoicous)
ACCCGTACTTTCATATTTTTCGGGTCCAAAGGTATTCTTCTTTGATATTC
GAATTCATCACAATCTGGCGGCCCCCCGGGACTTCAAACTTCAAACTTTT
TCACCCACTCGCCACTCGCCCACTCGGGTCACAACCGCAACGAGTTTCCC
AGCCCCCAACGCTACACACAACATGGCAACAACAGCAGCGACACCGGCAC
CACCAGCACCAGCAGCAGCAAGTGCTGCCTTGAGCGCACACGTTTCGACA
CACACTACTGATGGTACGCCGGTTCTGGAGCTCGTCGTTGTCGACCCAGC
CGTTGCGCCTACGGCTGCTGCTGCGCCTGCGCCTGCGCCTACGCCTGCGC
CTGACCCAACAACCTCTCCGACGCCAGCGCCGGGAGGTGCGATGGACCAG
TTCCTGGCCCCAATGCCTCCTGGGAGGGAAGAGTCGCGTCACCTTTTCGT
CACGACCCACAAGTGGACTGTGTCGGCTCTGGATCGGACGCGCAAGACCG
TGGCTCCCAAACCTCAACCTGAGGGGTCGCGGAAGCGAGCAAAGCGAGGC
GCCAACGGCCTCTCCGGCTCCAATCCAAAGGGGATCTCAGCTGCTGCACG
CGTGAAAGAGTTTCCGAACGATTCGCTAGATGTCTCCGCGGGAAGCCTCT
TCTGCTGCGCGTGCTCCTCGCGCTTGGGGACTCGCAGGTCGACGATCATG
TCGCACATCGGCCTCACCGCGGCGGGGACGCACATCGCCAAGCCCAACAA
GCACATGAAGAAGATGGTGCTGTTCAACGCGAACAAGGCGGAGACGCCTC
AGAGAATGCAGAGGTTTTCCGAGTTCTGCGAACGCAACAACACTTACGGC
AAGAACCTCCAACCCGAGAATAGCGACCAGAGATGCACGGTGAGTTTTAC
GGATGATGTTTTTTTCGGTTGACAAATATTTGAATTTCGAGCCAAGTAAA
AAAACTAGGTACTTGTATTGCACAGCAGTGAGGTTTTTCCCCACGCCCGC
CGGAGGGCAAAAAAAAAAAAACAGCAGTGAAAAGTAACAGAGCGTTCACA
ACTAGTTCGATATAGTACACGAGTGTATCTATCTGTCTGTGTACTTGTAT
GCTACCATGTGTAATCTTGTACGTATTTTATAACATGTGTAGAGGGTGAG
GATGCGCTGCTACGCTTTCTAAACATTCGACTGCAGTATTCATACTGCTT
GCCGCGGCTGCTGTGTTTTTCTGTGCAAACAACAAACAGGTTCTGCACAA
AAAGTCTGACTATGTTTTTGCTTGTTGTCCCTTGCCGTTGCCGAACCCCC
CCCCCTGATCTCTCTCGGGCGTATCCGTCGCAGATTATTCGGCAACTGAT
GTCCGCCGGAGTTCTGCTCTCCAAGCTCGACGATCTGGTCCCCATGTTCA
ACGGCCTTCGAGCGAACATGTGCGGGTCCTCAAAGGGAAAGGAGTACATC
GGCTTCATCGCCGAGGAGGAGATGCGCCGGACCAGGGAGGAGGTCGCCGG
CAAGTGCGTCAGCGTGGCTATCGACTGCACCCCGTTCAGCGGCACGGTGA
GTACGTCGCCGCAAAGACTCGAGTGAGGTGATGCGTACTTATATTCTTGC
GTCTGTCTCTTTGTTTCGGGGTGGTTCTCGTTCTCCTCCCAACAAGCACT
GCTTTTTTTTTATTTTTGCGCTCTCAGGTTGGATAACTCTCCTGCGCAAC
TGCGCAGCGCAACCACGTCATTGTATGCCTGAAGGACATCCGCGAGTACG
CCACCAGGCAGTTCGGCAGTGGAGCAGATGTCAAGTTTCGCCAAGAGCTT
GACTTGTTCAAGGCGGCACGGATCATCAACTTCGCGGTCGCTCGCCAGGG
CAACCCTGACGAAGTCGACCCCGGGGTGCTGAGCATCTTCCCGTTCATCA
GCAACGACGACATCACCAACCTCCGCAAGGAGCTGCCGGCGTACCTTACC
GCCGCGGCCAACGCGAGGGCGACGTACCCTGTGCGGAGCTTCTGGGTGGA
CAACCAGACTACTCTGCCGGCATGGTACAGCGTGGTGGAGAAGCTGTGGC
TGGTTCAGCCTTCGTCTGCAATGATGGAGCGCGTTTTCTCCGTCCTCAAC
AACGTCTTCGGCAAGCAGCAGACGGTCGCCCTCAACGACCTTGTCGAGAC
GACCGTGATGGGGCGTTTCAACGACACGGATCGCACCAAGGGAACGGCTG
CCCAAGTCGCGGACTTGGTGGAGGACACGGTGATCGACGGGAGCGGGGGC
GGCAGTGAGGCGTCCGGCGTCAGCCAGGACAACACCGGCGTGGCTCAGGC
CAACGCCGCCATGGAAGAGTAGAGCAACATACTTTTTCGCCGTTGACAGA
AATTCGCTCGGTTGTGGCCGTGTTTTCTTTTAAAGAGTATTCGCTGGTTT
GAGTAGAGCGATGAACGTCGTGTGGAGGTTTGAGGCCGGAACAACAGGCT
TGAGCAAGTTGTTCGCCCGCAGCTTGCCTCATTCATTGCAGTATTCATTT
TCTTAGATTTTCTGGTTGATTCATGTGTCTGGGTTGAATGATGAATGTCG
TGTTGAGGTTTTGATGGCGGATCGAAAAACAGGCTTGAACAAGGTGATCG
CCCGCAGTTCCGCAGTTCTACCTTGTTGTTCGTTTCCTTTTTGTCTCGTG
GGCCGATCAGAAGAGAGAAGAACAGCAGTGCGTACAACCTCGTGCTTCTT
GCATAAAAAATTTACCTGTCCAACCGTACACGTACACAGGGTACACAGGT
AACACGCATCATGTACGGTAGAAAATGTGCGGGAGCCTCACTTAGGCCTT
TCGAACCTGCGCATCTGCGCATACTACTGCTGTATAAGCCCTACAAGCCA
ATATATACAAAGCACTCTAAAATCCGCCGAGGGCCTGGCGAGGATGATGA
CCATTATCGTGGAGGTGCTCCGAGAGTTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig90:45811..48739+

>mRNA_C-linearis_contig90.16754.1 ID=mRNA_C-linearis_contig90.16754.1|Name=mRNA_C-linearis_contig90.16754.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at C-linearis_contig90:45811..48739+ (Chordaria linearis ClinC8C monoicous)
ATGGCAACAACAGCAGCGACACCGGCACCACCAGCACCAGCAGCAGCAAG
TGCTGCCTTGAGCGCACACGTTTCGACACACACTACTGATGGTACGCCGG
TTCTGGAGCTCGTCGTTGTCGACCCAGCCGTTGCGCCTACGGCTGCTGCT
GCGCCTGCGCCTGCGCCTACGCCTGCGCCTGACCCAACAACCTCTCCGAC
GCCAGCGCCGGGAGGTGCGATGGACCAGTTCCTGGCCCCAATGCCTCCTG
GGAGGGAAGAGTCGCGTCACCTTTTCGTCACGACCCACAAGTGGACTGTG
TCGGCTCTGGATCGGACGCGCAAGACCGTGGCTCCCAAACCTCAACCTGA
GGGGTCGCGGAAGCGAGCAAAGCGAGGCGCCAACGGCCTCTCCGGCTCCA
ATCCAAAGGGGATCTCAGCTGCTGCACGCGTGAAAGAGTTTCCGAACGAT
TCGCTAGATGTCTCCGCGGGAAGCCTCTTCTGCTGCGCGTGCTCCTCGCG
CTTGGGGACTCGCAGGTCGACGATCATGTCGCACATCGGCCTCACCGCGG
CGGGGACGCACATCGCCAAGCCCAACAAGCACATGAAGAAGATGGTGCTG
TTCAACGCGAACAAGGCGGAGACGCCTCAGAGAATGCAGAGGTTTTCCGA
GTTCTGCGAACGCAACAACACTTACGGCAAGAACCTCCAACCCGAGAATA
GCGACCAGAGATGCACGATGGCAACAACAGCAGCGACACCGGCACCACCA
GCACCAGCAGCAGCAAGTGCTGCCTTGAGCGCACACGTTTCGACACACAC
TACTGATGGTACGCCGGTTCTGGAGCTCGTCGTTGTCGACCCAGCCGTTG
CGCCTACGGCTGCTGCTGCGCCTGCGCCTGCGCCTACGCCTGCGCCTGAC
CCAACAACCTCTCCGACGCCAGCGCCGGGAGGTGCGATGGACCAGTTCCT
GGCCCCAATGCCTCCTGGGAGGGAAGAGTCGCGTCACCTTTTCGTCACGA
CCCACAAGTGGACTGTGTCGGCTCTGGATCGGACGCGCAAGACCGTGGCT
CCCAAACCTCAACCTGAGGGGTCGCGGAAGCGAGCAAAGCGAGGCGCCAA
CGGCCTCTCCGGCTCCAATCCAAAGGGGATCTCAGCTGCTGCACGCGTGA
AAGAGTTTCCGAACGATTCGCTAGATGTCTCCGCGGGAAGCCTCTTCTGC
TGCGCGTGCTCCTCGCGCTTGGGGACTCGCAGGTCGACGATCATGTCGCA
CATCGGCCTCACCGCGGCGGGGACGCACATCGCCAAGCCCAACAAGCACA
TGAAGAAGATGGTGCTGTTCAACGCGAACAAGGCGGAGACGCCTCAGAGA
ATGCAGAGGTTTTCCGAGTTCTGCGAACGCAACAACACTTACGGCAAGAA
CCTCCAACCCGAGAATAGCGACCAGAGATGCACGATTATTCGGCAACTGA
TGTCCGCCGGAGTTCTGCTCTCCAAGCTCGACGATCTGGTCCCCATGTTC
AACGGCCTTCGAGCGAACATGTGCGGGTCCTCAAAGGGAAAGGAGTACAT
CGGCTTCATCGCCGAGGAGGAGATGCGCCGGACCAGGGAGGAGGTCGCCG
GCAAGTGCGTCAGCGTGGCTATCGACTGCACCCCGTTCAGCGGCACGATT
ATTCGGCAACTGATGTCCGCCGGAGTTCTGCTCTCCAAGCTCGACGATCT
GGTCCCCATGTTCAACGGCCTTCGAGCGAACATGTGCGGGTCCTCAAAGG
GAAAGGAGTACATCGGCTTCATCGCCGAGGAGGAGATGCGCCGGACCAGG
GAGGAGGTCGCCGGCAAGTGCGTCAGCGTGGCTATCGACTGCACCCCGTT
CAGCGGCACGGTTGGATAAGTTGGATAA
back to top