mRNA_C-linearis_contig9.16749.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16749.1
Unique NamemRNA_C-linearis_contig9.16749.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 7.100e-133
Identity = 218/261 (83.52%), Postives = 231/261 (88.51%), Query Frame = 1 
Query:   46 LRAVSSLVSLSALATSSAFVAPGG-FVRASTKPHAVATALRCLSGGRPTCA-RPAATSRRPAQARTIMMMSDATAEAGVDEEAA-AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 819
            +RAVSSLVSLSALATSSAFVAPGG  +RAST     A ALRCLS  R T + RP A  RRP   RT+MMMSDA   A  +EEAA AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLG GEEEGPRTIVSGLVNFCEESDLLGR+VVVLCNLKPV+MKG+TSAGMLLCSS+EDHSKVEPLCPP GVPLGELVTF+GHLPSPVDAGNRAGKAWK+ASKTL VDDS+ AKF+GEKLPA FMTSKGPITSPLPGSIS
Sbjct:    1 MRAVSSLVSLSALATSSAFVAPGGNAIRASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTAVRTMMMMSDA---AVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.230e-76
Identity = 126/195 (64.62%), Postives = 156/195 (80.00%), Query Frame = 1 
Query:  238 IMMMSDATAEAGVDEEAA-AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 819
            + M ++A+ E G    A  AAP G+LTELARLE+R+G+IVEI RHPDAD LYVEK+D+G  E  GPRTIVSGLV +C E+DLL R+VV+L NLKPV+M+G+ SAGM+LCSS+ DH++V PL PP G PLGELVTFEGHL +PV+AGNRA KAWKK +KT+ V +  VA+F+ E LPA F TSKG +TSPLPG+IS
Sbjct:   52 MQMSTEASTEEGAAAAAEPAAPVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIG--EPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 6.360e-60
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:  295 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 819
            AP GELTEL+RLEIR GKI+EI+RHP+AD LYVEK+DLG  E +GPRTIVSGLV +  E +LLGREVVVL NLKP ++KGITS GMLLC+S+EDH+ V+PL PP GV LGEL+TFEGH  +P   GNRAGKA+ + ++ L   +  +A + G  +P  FMTSKGP+T+ + GSIS
Sbjct:  192 APKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLG--EADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.770e-56
Identity = 112/178 (62.92%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:  289 AAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP-LPGSIS 819
            AA P+G+  E   LEIR+GKI+EI +HP+ADSLYVEKVDLG  E  GPRTIVSGLV FC    LL R+VVVLCNLKP + KGI S GMLLCSS++   KVEPL PPAGVP GELV+FEGH+  P + GNRA KA+ K S   +V DS +A + G  +P  FMTSKGPITS  L G IS
Sbjct:   66 AAKPSGDSIEA--LEIRVGKILEIGKHPEADSLYVEKVDLG--ESSGPRTIVSGLVEFCTAEYLLNRDVVVLCNLKPRAFKGINSQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKG--IP--FMTSKGPITSTILKGPIS 235
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.640e-56
Identity = 101/171 (59.06%), Postives = 127/171 (74.27%), Query Frame = 1 
Query:  307 ELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 819
            ELTEL+RLEIR+GKIVE+ RHP+AD LYVEK+DLG  E  GPRTIVSGLV FC    LL   V+VLCNLKP ++KGITS GM+LC++S+D +KV+PL PP   P+G+L+TFEGHL  PV+ GNRA KA+ K +    V++  VA ++G  +P  F T  GP+TS L G IS
Sbjct:   51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLG--EPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNG--IP--FSTPNGPVTSTLIGKIS 215
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.310e-53
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 1 
Query:  280 EEAAAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 819
            +E AAAP GEL E +RLEIR+GKIV+++ HPDAD LYVEK+D G   E+ PRTIVSGLV + +  DLL R VVVL NLKP +M+GITS GMLLC+S+EDHS+V PL PP     GEL+T EG L  P++  NRA KA+ K +K L V+D   A F G+     F+T  GP TS + G+IS
Sbjct:   73 KEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCG---EDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKP----FLTPNGPCTSTMKGAIS 245
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 187 bits (474), Expect = 7.100e-53
Identity = 95/181 (52.49%), Postives = 128/181 (70.72%), Query Frame = 1 
Query:  274 VDEEAAAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSI 816
            VD     AP GE+TEL+RLEIR+GKI+E+A HP  + ++VEK+D+G   E+ PRTI SGL ++ +E DLL ++ +VLCNLKP  + G+ S GM+LC+S  +H+ V+ + PPAGV  GELVTF+GHL +PVDAGNRA KA+KK +     DDS  A F+GE   + F TS GP TSP+   +
Sbjct:   61 VDSVEEVAPVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVG---EDEPRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPASS-FQTSSGPCTSPISNGV 237
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 185 bits (470), Expect = 2.240e-52
Identity = 98/172 (56.98%), Postives = 123/172 (71.51%), Query Frame = 1 
Query:  310 LTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP--LPGSIS 819
            LTEL+RLEIR+GK+VE  RHPDAD+LYVEKVD+G   E+ PRTIVSGLVNF  + +L GR V+VLCNLKP +M+GI S GMLLC+S+EDH+KV+PL  P    +G L+TFEGH  +P+DAGNRA KA+ K +     D   +A+F+       FMT  G   SP  L GS+S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVG---EDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATP----FMTEAGACYSPAKLQGSVS 232
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 182 bits (463), Expect = 9.640e-51
Identity = 101/177 (57.06%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:  295 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP--LPGSIS 819
            AP   LTEL+RLEIR+GKI+E  +HPDAD+LYVEKVD+G   EE PRTIVSGLV +     ++GR VVVLCNLKP +M+G+TS GMLLC+S+EDH+ V+PLC P   P+GELVTFEGH  +P+D  NRA KA+ + +  L  +++ VA F  E +P  F TS GP  S   + GSIS
Sbjct:  110 APDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVG---EEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMF--EDVP--FSTSAGPCFSAENVIGSIS 279
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BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 182 bits (461), Expect = 1.000e-50
Identity = 103/184 (55.98%), Postives = 132/184 (71.74%), Query Frame = 1 
Query:  283 EAAAAPTGE---LTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP--LPGSIS 819
            E AA   GE   LTEL+RLEIR+GKI++  +HP+ADSLYVE+VD+G  +E G R IVSGLV+F    +++ R V+VLCNLKP +M+GI+S GMLLC+S+EDHS+V+PL  P GVP+G LVTFEGH   P  AGNRA KA+ K +K+L  D + VA F  E++P  F T  GP  SP  L G +S
Sbjct:   80 ETAAGNEGESLPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVG--DESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMF--EQVP--FATPSGPCFSPKKLVGPVS 257
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI7.100e-13383.52Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA1.230e-7664.62Endothelial monocyte-activating polypeptide II pro... [more]
W7U6C4_9STRA6.360e-6062.86Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S3M138_9STRA1.770e-5662.92Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S0XDL6_9STRA2.640e-5659.06Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2V4I0_9STRA4.310e-5356.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2R5F0_9STRA7.100e-5352.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ZE83_9RHOD2.240e-5256.98Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A2V3IUX7_9FLOR9.640e-5157.06Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A5J4Z2W6_PORPP1.000e-5055.98Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3838196..3841839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.1
Seed ortholog evalue6.5e-108
Seed eggNOG ortholog2880.D7FMW6
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorychloroplast
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-09_002760.1
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons6
Model size1383
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16749.1prot_C-linearis_contig9.16749.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3838757..3841833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.652835-UTR-C-linearis_contig9:3838195..38387561622930767.652835-UTR-C-linearis_contig9:3838195..3838756Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3838196..3838756 -
1690881239.435732-UTR-C-linearis_contig9:3838195..38387561690881239.435732-UTR-C-linearis_contig9:3838195..3838756Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3838196..3838756 -
1622930767.7622344-UTR-C-linearis_contig9:3841833..38418391622930767.7622344-UTR-C-linearis_contig9:3841833..3841839Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3841834..3841839 -
1690881239.5173953-UTR-C-linearis_contig9:3841833..38418391690881239.5173953-UTR-C-linearis_contig9:3841833..3841839Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3841834..3841839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.6701856-CDS-C-linearis_contig9:3838756..38388461622930767.6701856-CDS-C-linearis_contig9:3838756..3838846Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3838757..3838846 -
1690881239.4487956-CDS-C-linearis_contig9:3838756..38388461690881239.4487956-CDS-C-linearis_contig9:3838756..3838846Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3838757..3838846 -
1622930767.688097-CDS-C-linearis_contig9:3839366..38395671622930767.688097-CDS-C-linearis_contig9:3839366..3839567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3839367..3839567 -
1690881239.4587119-CDS-C-linearis_contig9:3839366..38395671690881239.4587119-CDS-C-linearis_contig9:3839366..3839567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3839367..3839567 -
1622930767.7010741-CDS-C-linearis_contig9:3839943..38401171622930767.7010741-CDS-C-linearis_contig9:3839943..3840117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3839944..3840117 -
1690881239.4689252-CDS-C-linearis_contig9:3839943..38401171690881239.4689252-CDS-C-linearis_contig9:3839943..3840117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3839944..3840117 -
1622930767.7159996-CDS-C-linearis_contig9:3840696..38408281622930767.7159996-CDS-C-linearis_contig9:3840696..3840828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3840697..3840828 -
1690881239.4790194-CDS-C-linearis_contig9:3840696..38408281690881239.4790194-CDS-C-linearis_contig9:3840696..3840828Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3840697..3840828 -
1622930767.7287776-CDS-C-linearis_contig9:3841139..38412521622930767.7287776-CDS-C-linearis_contig9:3841139..3841252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3841140..3841252 -
1690881239.4906924-CDS-C-linearis_contig9:3841139..38412521690881239.4906924-CDS-C-linearis_contig9:3841139..3841252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3841140..3841252 -
1622930767.7427235-CDS-C-linearis_contig9:3841727..38418331622930767.7427235-CDS-C-linearis_contig9:3841727..3841833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3841728..3841833 -
1690881239.503085-CDS-C-linearis_contig9:3841727..38418331690881239.503085-CDS-C-linearis_contig9:3841727..3841833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3841728..3841833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16749.1

>prot_C-linearis_contig9.16749.1 ID=prot_C-linearis_contig9.16749.1|Name=mRNA_C-linearis_contig9.16749.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MGFSLSTSPAMVYLRAVSSLVSLSALATSSAFVAPGGFVRASTKPHAVAT
ALRCLSGGRPTCARPAATSRRPAQARTIMMMSDATAEAGVDEEAAAAPTG
ELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLV
NFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPP
AGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEK
LPAVFMTSKGPITSPLPGSIS*
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mRNA from alignment at C-linearis_contig9:3838196..3841839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16749.1 ID=mRNA_C-linearis_contig9.16749.1|Name=mRNA_C-linearis_contig9.16749.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3644bp|location=Sequence derived from alignment at C-linearis_contig9:3838196..3841839- (Chordaria linearis ClinC8C monoicous)
GCTTGTATGGGCTTTTCCTTGTCCACAAGTCCTGCCATGGTGTACTTGCG
AGCTGTTTCGTCTCTGGTTTCTCTGTCGGCCCTGGCCACGTCATCGGCGT
TCGTGGCTCCAGGTCGGACAAGCAAGCATTGTTGAAAAAAAACTTCGTGC
GGCCGGTAGCGAGATAGCAGACATTGTATTTTAGCACATAGGATCATGCA
CGTTCCGTCATCACGTCCCACAGCTCGCTTGTGATATGCTGCTGCTGCTG
CAGCGGGGCAGCATGCCACTTGTTGCCTGTATGTGTACAGTGAGTAATCG
TGTGCTGGTAGTCCATTTCTCGGCAAAAAAACGTCAGAGAGGGTGTGGAA
AGATGTCAGTGCTTCCAAATGCAGTGCTACATGCTCGCAGTACATGTTGC
AGAAGATTAGTCGTACCTGTGGTACCTGGTACGAAGTGTACGCGTGTAGC
CTCTTCGTCTGTTCGGAGATAGCGGAACGCGTGTGCTATGCGCATTGCCT
GGTTGTTTTATCTCTTGATATACACTCACAAAACCAAACACGCACCGCCG
CTTGTGCAACACACGATGAAAAAAACACGCCCGTCAGGTGGCTTCGTCCG
CGCAAGCACCAAGCCCCATGCCGTCGCGACGGCCCTGCGATGCCTCTCGG
GAGGACGTCCTACTTGCGCCCGGCCAGCCGCAACGTCAAGGCGACCCGCG
GTAGGTCCCTCACGATGTGCACAATGAATTGTAGGATGGACGTGTCCTCT
CCGCTGTATGTATCACGCCAGTAAAGCGTTGGGACAGCAGCAGTGGTTGC
CATTGCAAGGTGGTTATTATCCTCTCACAACCAAAGCTCACATGTTTACA
TGTTCACAGTCTTATACCGACCGAGTGCGCTCCCTTGCTATCCATCTACA
TATGTACCCCATGCACGCATGTGCTTGGTGATCATGGTTTATTTCGTCGT
CGGAGCAGGCAAGGACGATGATACTGATGCCTGATGCCTTTTATTAACCT
TGGCGTGGTAGCAGGCCCGGACGATAATGATGATGTCCGATGCCACGGCG
GAGGCGGGCGTGGATGAGGAGGCCGCCGCGGCACCCACGGGGGAGCTGAC
AGAGCTGGCGCGGCTCGAAATTCGCATCGGGAAGATTGTGGAGGTGATAC
TGCTTGGAGGGGGAGGAGGGGGAAGGGGAGGCGCCGTTCCTCTCCGCTCG
TCCTTTCCTCGCCTTGGAGATGTGTCGCGTTGCTTTCTGTCTTTCAACGT
CAGACATAGCCAATACCACTTTCGGTCTATGTCTGTGTTTTCTCTCTCTC
TCTCTCTCGCGTGTGCGCTCTGTGTTTGTGTGTGTGTGTGTGTCGCTCTA
GATTTGGTTCACCACAACTCGTGCCTGAAATCCCCACCCCACACAACTGA
TTGATACTGCAGTAACGTAGCACATCCAACCATACCGATGTTACCCCCAC
CCAAACCGATCGTCGCCCCCACAGCACGGCATCGCGGCCCAAGAGCCGAT
GGTGTGCGGCCACAACATGATATTTTTATTCCAAGCACCCGCCCTTATCC
CCACCCCTGCCCCCTTCCCGCACTCCTTTTTTAAGTTTTCCACGGAACAT
CAGCGGTCGAAGTCCAACCTGTAAAAAGACGTCCTTCCAGCAGAGGATAA
CTGCCTGTCGTAGACACTCATTAATAGGCCGCCTGTTTTGGGTTGGTGTA
TTTTTGATATGGTGGCCGGCAGATCGCTAGGCATCCGGACGCCGACAGCC
TGTACGTGGAGAAGGTCGACCTCGGGGCGGGCGAGGAGGAGGGGCCCCGC
ACGATCGTGTCGGGTCTTGTGAACTTCTGCGAGGAGTCGGACCTGCTGGG
GCGGGAGGTGGTGGTGCTCTGCAACCTCAAGCCCGTCAGCATGAAGGTAA
ATTAAGGGTGTGAGTGGCTCATGTACAAAGGATGTATGTTTTGAAGTGTT
TTCTCTTTGGTGGTTCGAGGCCTTGTGTATGTACTTGGTGTGGATGCGTG
TGTGTCGCGTGCGCCGACAACCTTGAATACATGCGTGTCAGTGAACGTTG
TTTTTCGTGTTTGCCCGTCACGAAGTACGAAACATGCGCTCCTCTACTAA
AACTACAACCCACCCGCAGGCACACACATACCCGGGGAAACACGTTCCAC
TCCCGCCACCACTTGGCCCCGCCCCCCCCCCTCCCCCTCCCCGACCTAGG
GAATAGTCTAGACTAGAAAACAAACTCCCTCCTCCCTCCTCCCCCGCCCT
TCGCGCCCCCATCCATCCCCAGGGGATCACATCGGCGGGCATGCTGCTCT
GCTCGAGTAGCGAGGACCACAGCAAGGTGGAGCCGCTCTGCCCCCCGGCG
GGAGTGCCGCTGGGAGAGCTGGTCACCTTCGAGGGGCACCTGCCGTCCCC
CGTGGACGCGGGGAACCGGGCCGGTAAGGCTTGGAAGAAGGCCTCCAAGA
CGCTGCTGGTGGATGACAGCAAGGTAAATTCAATTTCGCGTTCTGTGCTG
GTGTATGTTTTTTTTTTAGTGTGAACGGCGTTGGCGGGGTGAAGGGTGGT
GTGATGGTGGTCGGGCCAGAAAACACACCCGGCTATGTATGTGTCTGTGT
ACGCCGTTTATGTCTCGGCTACCTAGATTTGTCTCTCGGCAAATGAGGCG
CCACAGGGCCGAGTACCCTTGATTTTTTTTCGGAACTGATGTGTATACCG
GATTTTGTTTCGAATAGGAATTTCCGCGGCGGCGAAGGAGTTTGGCCTTA
ACGCAAGACGCCTAACCCTCACTTACGCTCGTCGCTAAGTTAGTTCGTCA
AGCTCGGCTTAACACATTTGATGCTTTGTGCAAGAACGCTGAGCCTATCG
GAGATGCTCATTCTCTGAACGTGTGAATGTGTATGTGCGCACCGAGGTAG
GCTGTAGTAGAGCATGGACCGAAAATATTAAAATTCACCTGTTACACATA
CATACTGAAGAGGGGGCCGACCGCAAATGTCTCCATGCCGCAGGTGGCCA
AGTTTTCCGGGGAGAAGCTCCCCGCCGTGTTCATGACCTCCAAGGGTCCA
ATCACCTCACCTCTCCCCGGCAGCATCTCTTAAAACCAGCGCGATCTGAT
CCACGAGGAGGCTTCCACAATGCATTTAGGGAGAGTTTTTGGCCTTGTTA
TCCACAGGTGGTCGGGTTTCAGAACTCCATTGGGTTGTTGCGACGTACAT
ACCTAGTGCTTGATGGACCCAGGACGGTTGCTGGTGGATAGATGGGGAGG
CTGGGGGTCAGGGATGGTTTGTCGTGTTTCTTTTTGAAGTTAGAAATGGT
TTTGCTCTGGCGAGGTTTGACCGAATTCAAGTGAAAGAGCAAGACGCGTG
TGATATCTGCGGGTGACAGCAGCTGAGTAGTATCGACTGTGAAGGCCTTG
AGCTATGCACGCGCATGTGTGAAGGTGACATTACAGAGAAGTGACGGAGC
AGTCCCTTGTGCCTCCGCAGACATGAGACCCGTTTTCAACCGTCTCAGTG
GACGGTCACCACCCGCCTCCCAACCTTGCTGCGTAAAGTACTGGACAACA
GAGTTGAGCACGCTGGTGGAAAATCCCCAAGGCCCCAACACCGCCTTGCA
GACCATGGAATCCTTCACATACGGAGTATATTTCATCATTTCAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3838196..3841839-

>mRNA_C-linearis_contig9.16749.1 ID=mRNA_C-linearis_contig9.16749.1|Name=mRNA_C-linearis_contig9.16749.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig9:3838196..3841839- (Chordaria linearis ClinC8C monoicous)
ATGGGCTTTTCCTTGTCCACAAGTCCTGCCATGGTGTACTTGCGAGCTGT
TTCGTCTCTGGTTTCTCTGTCGGCCCTGGCCACGTCATCGGCGTTCGTGG
CTCCAGATGGGCTTTTCCTTGTCCACAAGTCCTGCCATGGTGTACTTGCG
AGCTGTTTCGTCTCTGGTTTCTCTGTCGGCCCTGGCCACGTCATCGGCGT
TCGTGGCTCCAGGTGGCTTCGTCCGCGCAAGCACCAAGCCCCATGCCGTC
GCGACGGCCCTGCGATGCCTCTCGGGAGGACGTCCTACTTGCGCCCGGCC
AGCCGCAACGTCAAGGCGACCCGCGGTGGCTTCGTCCGCGCAAGCACCAA
GCCCCATGCCGTCGCGACGGCCCTGCGATGCCTCTCGGGAGGACGTCCTA
CTTGCGCCCGGCCAGCCGCAACGTCAAGGCGACCCGCGCAGGCCCGGACG
ATAATGATGATGTCCGATGCCACGGCGGAGGCGGGCGTGGATGAGGAGGC
CGCCGCGGCACCCACGGGGGAGCTGACAGAGCTGGCGCGGCTCGAAATTC
GCATCGGGAAGATTGTGGAGCAGGCCCGGACGATAATGATGATGTCCGAT
GCCACGGCGGAGGCGGGCGTGGATGAGGAGGCCGCCGCGGCACCCACGGG
GGAGCTGACAGAGCTGGCGCGGCTCGAAATTCGCATCGGGAAGATTGTGG
AGATCGCTAGGCATCCGGACGCCGACAGCCTGTACGTGGAGAAGGTCGAC
CTCGGGGCGGGCGAGGAGGAGGGGCCCCGCACGATCGTGTCGGGTCTTGT
GAACTTCTGCGAGGAGTCGGACCTGCTGGGGCGGGAGGTGGTGGTGCTCT
GCAACCTCAAGCCCGTCAGCATGAAGATCGCTAGGCATCCGGACGCCGAC
AGCCTGTACGTGGAGAAGGTCGACCTCGGGGCGGGCGAGGAGGAGGGGCC
CCGCACGATCGTGTCGGGTCTTGTGAACTTCTGCGAGGAGTCGGACCTGC
TGGGGCGGGAGGTGGTGGTGCTCTGCAACCTCAAGCCCGTCAGCATGAAG
GGGATCACATCGGCGGGCATGCTGCTCTGCTCGAGTAGCGAGGACCACAG
CAAGGTGGAGCCGCTCTGCCCCCCGGCGGGAGTGCCGCTGGGAGAGCTGG
TCACCTTCGAGGGGCACCTGCCGTCCCCCGTGGACGCGGGGAACCGGGCC
GGTAAGGCTTGGAAGAAGGCCTCCAAGACGCTGCTGGTGGATGACAGCAA
GGGGATCACATCGGCGGGCATGCTGCTCTGCTCGAGTAGCGAGGACCACA
GCAAGGTGGAGCCGCTCTGCCCCCCGGCGGGAGTGCCGCTGGGAGAGCTG
GTCACCTTCGAGGGGCACCTGCCGTCCCCCGTGGACGCGGGGAACCGGGC
CGGTAAGGCTTGGAAGAAGGCCTCCAAGACGCTGCTGGTGGATGACAGCA
AGGTGGCCAAGTTTTCCGGGGAGAAGCTCCCCGCCGTGTTCATGACCTCC
AAGGGTCCAATCACCTCACCTCTCCCCGGCAGCATCTCTTAAGTGGCCAA
GTTTTCCGGGGAGAAGCTCCCCGCCGTGTTCATGACCTCCAAGGGTCCAA
TCACCTCACCTCTCCCCGGCAGCATCTCTTAA
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