prot_C-linearis_contig9.16749.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16749.1
Unique Nameprot_C-linearis_contig9.16749.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length272
Homology
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 2.720e-135
Identity = 218/261 (83.52%), Postives = 231/261 (88.51%), Query Frame = 0
Query:   14 LRAVSSLVSLSALATSSAFVAPGG-FVRASTKPHAVATALRCLSGGRPTCA-RPAATSRRPAQARTIMMMSDATAEAGVDEEAA-AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 271
            +RAVSSLVSLSALATSSAFVAPGG  +RAST     A ALRCLS  R T + RP A  RRP   RT+MMMSDA   A  +EEAA AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLG GEEEGPRTIVSGLVNFCEESDLLGR+VVVLCNLKPV+MKG+TSAGMLLCSS+EDHSKVEPLCPP GVPLGELVTF+GHLPSPVDAGNRAGKAWK+ASKTL VDDS+ AKF+GEKLPA FMTSKGPITSPLPGSIS
Sbjct:    1 MRAVSSLVSLSALATSSAFVAPGGNAIRASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTAVRTMMMMSDA---AVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.110e-78
Identity = 126/195 (64.62%), Postives = 156/195 (80.00%), Query Frame = 0
Query:   78 IMMMSDATAEAGVDEEAA-AAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 271
            + M ++A+ E G    A  AAP G+LTELARLE+R+G+IVEI RHPDAD LYVEK+D+G  E  GPRTIVSGLV +C E+DLL R+VV+L NLKPV+M+G+ SAGM+LCSS+ DH++V PL PP G PLGELVTFEGHL +PV+AGNRA KAWKK +KT+ V +  VA+F+ E LPA F TSKG +TSPLPG+IS
Sbjct:   52 MQMSTEASTEEGAAAAAEPAAPVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIG--EPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.830e-62
Identity = 110/175 (62.86%), Postives = 137/175 (78.29%), Query Frame = 0
Query:   97 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 271
            AP GELTEL+RLEIR GKI+EI+RHP+AD LYVEK+DLG  E +GPRTIVSGLV +  E +LLGREVVVL NLKP ++KGITS GMLLC+S+EDH+ V+PL PP GV LGEL+TFEGH  +P   GNRAGKA+ + ++ L   +  +A + G  +P  FMTSKGP+T+ + GSIS
Sbjct:  192 APKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLG--EADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.990e-58
Identity = 112/178 (62.92%), Postives = 130/178 (73.03%), Query Frame = 0
Query:   95 AAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP-LPGSIS 271
            AA P+G+  E   LEIR+GKI+EI +HP+ADSLYVEKVDLG  E  GPRTIVSGLV FC    LL R+VVVLCNLKP + KGI S GMLLCSS++   KVEPL PPAGVP GELV+FEGH+  P + GNRA KA+ K S   +V DS +A + G  +P  FMTSKGPITS  L G IS
Sbjct:   66 AAKPSGDSIEA--LEIRVGKILEIGKHPEADSLYVEKVDLG--ESSGPRTIVSGLVEFCTAEYLLNRDVVVLCNLKPRAFKGINSQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKG--IP--FMTSKGPITSTILKGPIS 235          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.560e-58
Identity = 101/171 (59.06%), Postives = 127/171 (74.27%), Query Frame = 0
Query:  101 ELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 271
            ELTEL+RLEIR+GKIVE+ RHP+AD LYVEK+DLG  E  GPRTIVSGLV FC    LL   V+VLCNLKP ++KGITS GM+LC++S+D +KV+PL PP   P+G+L+TFEGHL  PV+ GNRA KA+ K +    V++  VA ++G  +P  F T  GP+TS L G IS
Sbjct:   51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLG--EPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNG--IP--FSTPNGPVTSTLIGKIS 215          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 8.340e-55
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 0
Query:   92 EEAAAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSIS 271
            +E AAAP GEL E +RLEIR+GKIV+++ HPDAD LYVEK+D G   E+ PRTIVSGLV + +  DLL R VVVL NLKP +M+GITS GMLLC+S+EDHS+V PL PP     GEL+T EG L  P++  NRA KA+ K +K L V+D   A F G+     F+T  GP TS + G+IS
Sbjct:   73 KEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCG---EDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKP----FLTPNGPCTSTMKGAIS 245          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.390e-54
Identity = 95/181 (52.49%), Postives = 128/181 (70.72%), Query Frame = 0
Query:   90 VDEEAAAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSPLPGSI 270
            VD     AP GE+TEL+RLEIR+GKI+E+A HP  + ++VEK+D+G   E+ PRTI SGL ++ +E DLL ++ +VLCNLKP  + G+ S GM+LC+S  +H+ V+ + PPAGV  GELVTF+GHL +PVDAGNRA KA+KK +     DDS  A F+GE   + F TS GP TSP+   +
Sbjct:   61 VDSVEEVAPVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVG---EDEPRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPASS-FQTSSGPCTSPISNGV 237          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 184 bits (466), Expect = 4.500e-54
Identity = 98/172 (56.98%), Postives = 123/172 (71.51%), Query Frame = 0
Query:  102 LTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP--LPGSIS 271
            LTEL+RLEIR+GK+VE  RHPDAD+LYVEKVD+G   E+ PRTIVSGLVNF  + +L GR V+VLCNLKP +M+GI S GMLLC+S+EDH+KV+PL  P    +G L+TFEGH  +P+DAGNRA KA+ K +     D   +A+F+       FMT  G   SP  L GS+S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVG---EDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATP----FMTEAGACYSPAKLQGSVS 232          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 181 bits (459), Expect = 2.020e-52
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 0
Query:   97 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITS 264
            AP   LTEL+RLEIR+GKI+E  +HPDAD+LYVEKVD+G   EE PRTIVSGLV +     ++GR VVVLCNLKP +M+G+TS GMLLC+S+EDH+ V+PLC P   P+GELVTFEGH  +P+D  NRA KA+ + +  L  +++ VA F  E +P  F TS GP  S
Sbjct:  110 APDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVG---EEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMF--EDVP--FSTSAGPCFS 270          
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 180 bits (457), Expect = 2.140e-52
Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = 0
Query:   93 EAAAAPTGE---LTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLVNFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPPAGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEKLPAVFMTSKGPITSP 265
            E AA   GE   LTEL+RLEIR+GKI++  +HP+ADSLYVE+VD+G  +E G R IVSGLV+F    +++ R V+VLCNLKP +M+GI+S GMLLC+S+EDHS+V+PL  P GVP+G LVTFEGH   P  AGNRA KA+ K +K+L  D + VA F  E++P  F T  GP  SP
Sbjct:   80 ETAAGNEGESLPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVG--DESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMF--EQVP--FATPSGPCFSP 249          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI2.720e-13583.52Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA1.110e-7864.62Endothelial monocyte-activating polypeptide II pro... [more]
W7U6C4_9STRA8.830e-6262.86Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S3M138_9STRA2.990e-5862.92Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S0XDL6_9STRA4.560e-5859.06Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2V4I0_9STRA8.340e-5556.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2R5F0_9STRA1.390e-5452.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ZE83_9RHOD4.500e-5456.98Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A2V3IUX7_9FLOR2.020e-5257.74Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A5J4Z2W6_PORPP2.140e-5256.82Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 101..269
e-value: 6.0E-48
score: 164.8
NoneNo IPR availablePANTHERPTHR11586:SF39NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 61..264
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 61..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..271
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.451
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 110..207
e-value: 1.0E-28
score: 99.3
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 104..210
score: 30.794
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 105..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3838757..3841833 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16749.1mRNA_C-linearis_contig9.16749.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3838196..3841839 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16749.1 ID=prot_C-linearis_contig9.16749.1|Name=mRNA_C-linearis_contig9.16749.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MGFSLSTSPAMVYLRAVSSLVSLSALATSSAFVAPGGFVRASTKPHAVAT
ALRCLSGGRPTCARPAATSRRPAQARTIMMMSDATAEAGVDEEAAAAPTG
ELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGAGEEEGPRTIVSGLV
NFCEESDLLGREVVVLCNLKPVSMKGITSAGMLLCSSSEDHSKVEPLCPP
AGVPLGELVTFEGHLPSPVDAGNRAGKAWKKASKTLLVDDSKVAKFSGEK
LPAVFMTSKGPITSPLPGSIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR012340NA-bd_OB-fold