mRNA_C-linearis_contig9.16744.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16744.1
Unique NamemRNA_C-linearis_contig9.16744.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16744.1 vs. uniprot
Match: D7FMW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMW4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.820e-32
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:  178 LVILDESTELPPFGMCMSGLQERLKRRLGLEIAESAIKACLSPYYDLAEWEDRYITKSLGVEVEEFGSADHPPRSPLEVFCLSSDGEE--DDG 450
            + +LDE+TELPPFG  ++ L++RLK RLGLEIA+SAI ACLSPYY+L EWEDRY+  SLG EV+EFGSA HPPR PLE F L +D E+  DDG
Sbjct:    1 MAVLDEATELPPFGFNIAVLEQRLKHRLGLEIAQSAINACLSPYYNLREWEDRYVVTSLGSEVQEFGSAGHPPRFPLEEFLLCTDDEQEADDG 93
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW4_ECTSI1.820e-3266.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3758221..3759972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002730.1
Exons2
Model size647
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.3005664-CDS-C-linearis_contig9:3758220..37584991622930705.3005664-CDS-C-linearis_contig9:3758220..3758499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3758221..3758499 +
1690881206.604841-CDS-C-linearis_contig9:3758220..37584991690881206.604841-CDS-C-linearis_contig9:3758220..3758499Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3758221..3758499 +
1622930705.3248599-CDS-C-linearis_contig9:3759604..37599701622930705.3248599-CDS-C-linearis_contig9:3759604..3759970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3759605..3759970 +
1690881206.6134062-CDS-C-linearis_contig9:3759604..37599701690881206.6134062-CDS-C-linearis_contig9:3759604..3759970Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3759605..3759970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16744.1prot_C-linearis_contig9.16744.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3758221..3759970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16744.1

>prot_C-linearis_contig9.16744.1 ID=prot_C-linearis_contig9.16744.1|Name=mRNA_C-linearis_contig9.16744.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp
QPPSSPSARSRQRNSMEDRESAPRIARKSSAISLSAGHNGVNSGTTRITD
AQCLSLAQQLVILDESTELPPFGMCMSGLQERLKRRLGLEIAESAIKACL
SPYYDLAEWEDRYITKSLGVEVEEFGSADHPPRSPLEVFCLSSDGEEDDG
SGDDDYDGEHTAVPAGSGTTFSDHAVDLGRADGGNVDDAGGGSAGDKMQE
GEEEEDAATGAGAAG
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mRNA from alignment at C-linearis_contig9:3758221..3759972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16744.1 ID=mRNA_C-linearis_contig9.16744.1|Name=mRNA_C-linearis_contig9.16744.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at C-linearis_contig9:3758221..3759972+ (Chordaria linearis ClinC8C monoicous)
CAACCTCCCTCCTCTCCGTCGGCACGTTCGCGCCAGCGCAACAGCATGGA
AGACCGCGAGAGCGCCCCACGAATCGCGAGGAAGTCCTCGGCGATATCCC
TGAGTGCTGGTCATAACGGTGTCAATAGCGGCACCACAAGAATCACGGAC
GCCCAATGCCTCTCGTTGGCCCAGCAACTGGTTATTCTTGACGAATCAAC
CGAGCTGCCGCCGTTCGGAATGTGTATGTCAGGGCTGCAAGAACGGTTGA
AACGCCGTCTCGGGCTCGAGATTGCCGAGGTACGTCAGCTTTTTCTTTGA
GTGCACCTACGTAACGCACCTCTTCGCGTGTGTGCGGTTGTGAAAAGCCC
ACAACAACAAGTTGCGTGACCGAATCTTATTCAAATTTGTATTATTTGCG
TCCCCTGGGCAGGGAGGGGACCGGGGTGTCTGCCTCCCATTGCCTTGCCC
ATTTCCTTGGTCCCCCAGCAGCCTTGTCGGTTTTCCGCAAGCTGCTAAAC
TGCTTGTCGATCTTCAATGTCGCCAAAGCATTGGGACGACAGCGGTGTCG
TTGTGTATAAGTCGCTGATGCTCTCCCATAATAATAAGGCATAGAGTCTA
GGAGTTCGCCCGCAACGCCGGGAGACGGACAACAGCAGCTACGTATGATA
CAATACAATAAGAGCTTCACTGGTGAATTGAACACACATCATCCTCTAAC
GTGCTGTCCATCTATGCTCTTCTCTGGTCTGCGTCAGCCTCTCGCCCAAT
CCGCGTTTTTTCTCTCCCTTTCGTACTCTGTGGGCTACCATGCTTCGGTC
TCTCTACCCTCTGTTACTTATATCTAGAGTCTACAACCCTCTTAACCCTC
CGGAGGTATTTCGGACGAATTGGGAAACGGCATGAGCTACCTGCGGGTGA
TGCAAGGGCAATGCGCGTATGACTGTTGTGTGTGTCTCACGACGATCCTT
TTCATGAGGTCCAGTCGCGTTGCGAGAACGGCTGTATACAGCTGTATAGT
CTTACATTTGTTTTTCGTCATCACATTTATTTCCGGAGTTCGCAGGGGCG
CCTTGCCACGCGGGGCATCTTGCTAGAACATCTGAACCGTGGCCATTGCT
CTGCTAAATTTAGGGCTGGCCAACTATTTAGTCAATACTGCGTCTCCTGT
GTCGGCATGTCTGTACACCAAGCATGTCGGCACACACACCCAGTTGTCGT
TCAGTTCGGCAGTGTGGCAAGAACGCGTGTCTAATCCTCTCCCCCTCCCT
CCGACGGCCGTTTTTTATCCCTCCCCCGCCGGTGACGCATGAACCAAAAC
AACAACGACGGCAAAACACGCATTAAACATCAAACCAACATCAACACCCA
CGCTAAAAAAACAAAAAAACTGCTGTGAGAGTAGTCGGCGATCAAGGCGT
GCCTGTCGCCGTACTACGACTTGGCCGAGTGGGAGGACCGCTACATCACC
AAGTCCCTGGGAGTCGAGGTGGAGGAGTTCGGCAGCGCGGACCACCCGCC
CCGCTCCCCGCTCGAAGTTTTTTGCCTGTCTTCGGACGGAGAAGAAGACG
ACGGTAGCGGCGACGACGACTACGACGGCGAACACACCGCCGTTCCCGCC
GGGAGCGGCACAACGTTCTCTGACCATGCCGTCGATCTCGGCCGTGCTGA
TGGCGGCAATGTCGATGACGCCGGTGGCGGCAGTGCGGGCGATAAAATGC
AGGAAGGAGAGGAGGAAGAGGACGCGGCCACCGGCGCCGGGGCCGCCGGC
GG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3758221..3759972+

>mRNA_C-linearis_contig9.16744.1 ID=mRNA_C-linearis_contig9.16744.1|Name=mRNA_C-linearis_contig9.16744.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig9:3758221..3759972+ (Chordaria linearis ClinC8C monoicous)
CAACCTCCCTCCTCTCCGTCGGCACGTTCGCGCCAGCGCAACAGCATGGA
AGACCGCGAGAGCGCCCCACGAATCGCGAGGAAGTCCTCGGCGATATCCC
TGAGTGCTGGTCATAACGGTGTCAATAGCGGCACCACAAGAATCACGGAC
GCCCAATGCCTCTCGTTGGCCCAGCAACTGGTTATTCTTGACGAATCAAC
CGAGCTGCCGCCGTTCGGAATGTGTATGTCAGGGCTGCAAGAACGGTTGA
AACGCCGTCTCGGGCTCGAGATTGCCGAGCAACCTCCCTCCTCTCCGTCG
GCACGTTCGCGCCAGCGCAACAGCATGGAAGACCGCGAGAGCGCCCCACG
AATCGCGAGGAAGTCCTCGGCGATATCCCTGAGTGCTGGTCATAACGGTG
TCAATAGCGGCACCACAAGAATCACGGACGCCCAATGCCTCTCGTTGGCC
CAGCAACTGGTTATTCTTGACGAATCAACCGAGCTGCCGCCGTTCGGAAT
GTGTATGTCAGGGCTGCAAGAACGGTTGAAACGCCGTCTCGGGCTCGAGA
TTGCCGAGTCGGCGATCAAGGCGTGCCTGTCGCCGTACTACGACTTGGCC
GAGTGGGAGGACCGCTACATCACCAAGTCCCTGGGAGTCGAGGTGGAGGA
GTTCGGCAGCGCGGACCACCCGCCCCGCTCCCCGCTCGAAGTTTTTTGCC
TGTCTTCGGACGGAGAAGAAGACGACGGTAGCGGCGACGACGACTACGAC
GGCGAACACACCGCCGTTCCCGCCGGGAGCGGCACAACGTTCTCTGACCA
TGCCGTCGATCTCGGCCGTGCTGATGGCGGCAATGTCGATGACGCCGGTG
GCGGCAGTGCGGGCGATAAAATGCAGGAAGGAGAGGAGGAAGAGGACGCG
GCCACCGGCGCCGGGGCCGCCGGCTCGGCGATCAAGGCGTGCCTGTCGCC
GTACTACGACTTGGCCGAGTGGGAGGACCGCTACATCACCAAGTCCCTGG
GAGTCGAGGTGGAGGAGTTCGGCAGCGCGGACCACCCGCCCCGCTCCCCG
CTCGAAGTTTTTTGCCTGTCTTCGGACGGAGAAGAAGACGACGGTAGCGG
CGACGACGACTACGACGGCGAACACACCGCCGTTCCCGCCGGGAGCGGCA
CAACGTTCTCTGACCATGCCGTCGATCTCGGCCGTGCTGATGGCGGCAAT
GTCGATGACGCCGGTGGCGGCAGTGCGGGCGATAAAATGCAGGAAGGAGA
GGAGGAAGAGGACGCGGCCACCGGCGCCGGGGCCGCCGGC
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