mRNA_C-linearis_contig9.16589.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig9.16589.1
Unique Name	mRNA_C-linearis_contig9.16589.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.100e-89
Identity = 141/189 (74.60%), Postives = 166/189 (87.83%), Query Frame = 3

Query:  234 LKEPLQAFAQIIMAKKVMSNDEAQKALDASYERFGQLGFDLGGAISKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQIKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGN--KKEMIKLFADQLVEDYWLSRPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH 794
            L+EPLQAFAQI+MA+KVMS DEAQKALD SY+RFG+L F L  AISKVDKMLS+MDMGVRSMKA+GP G IYHCF+NKTADEIAKLHGSKL DWQ+K F+G+IEKF +  EE++LEL++LQ L  HIK++     K+EMIK FADQLV+D+WL+RPGNDV+YRLGVRTYVELPELLK+F LEVPQVI+H
Sbjct:    4 LREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAK-SEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191

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BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-16
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 3

Query:  249 QAFAQIIMAKKVMSNDEAQKALDASYERF--GQLGFDLGGAISKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQIKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGNKKEMIKLFADQLVEDYWLS----RPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH 794
            QAF Q+++A +V+S ++AQ  L+A  +R   G L  DL   + +V++ L  MD+ VR+M  A P  E  H  VN  AD+IA+ HGSK+   +I+ F+  I   G+   E+K   +             G+  +  +   + +V+  WL+    R G     R+  R+++E+P+LL+S  +E PQ IYH
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTM--ALPQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGEDKWAAL-------------GDLNKADQAVVEDMVQRGWLAVDSQRRG-----RIAARSFLEIPDLLESHGIERPQFIYH 191

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot

BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSK7_ECTSI	1.100e-89	74.60	Non-structural maintenance of chromosomes element ...	[more]
A0A7S2VZL5_9STRA	1.370e-16	32.98	Non-structural maintenance of chromosomes element ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig9	contig	C-linearis_contig9:1639207..1644914 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	284.6
Seed ortholog evalue	3.3e-74
Seed eggNOG ortholog	2880.D8LSK7
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Nse1 non-SMC component of SMC5-6 complex
EggNOG OGs	2EYQU@1,2T06J@2759
Ec32 ortholog description	Non-structural maintenance of chromosomes element 1
Ec32 ortholog	Ec-09_001990.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	8
Model size	1466
Cds size	579
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig9.16589.1	prot_C-linearis_contig9.16589.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig9 1639425..1644245 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930738.0690494-UTR-C-linearis_contig9:1639206..1639424	1622930738.0690494-UTR-C-linearis_contig9:1639206..1639424	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 1639207..1639424 +
1690881223.5445971-UTR-C-linearis_contig9:1639206..1639424	1690881223.5445971-UTR-C-linearis_contig9:1639206..1639424	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 1639207..1639424 +
1622930738.3121822-UTR-C-linearis_contig9:1644245..1644914	1622930738.3121822-UTR-C-linearis_contig9:1644245..1644914	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 1644246..1644914 +
1690881223.6566846-UTR-C-linearis_contig9:1644245..1644914	1690881223.6566846-UTR-C-linearis_contig9:1644245..1644914	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig9 1644246..1644914 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig9:1639207..1644914+
coding sequence from alignment at C-linearis_contig9:1639207..1644914+

protein sequence of mRNA_C-linearis_contig9.16589.1

>prot_C-linearis_contig9.16589.1 ID=prot_C-linearis_contig9.16589.1|Name=mRNA_C-linearis_contig9.16589.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp
MSTQVLKEPLQAFAQIIMAKKVMSNDEAQKALDASYERFGQLGFDLGGAI
SKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQ
IKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGNKKEMIKLFADQL
VEDYWLSRPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH*

mRNA from alignment at C-linearis_contig9:1639207..1644914+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig9.16589.1 ID=mRNA_C-linearis_contig9.16589.1|Name=mRNA_C-linearis_contig9.16589.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5708bp|location=Sequence derived from alignment at C-linearis_contig9:1639207..1644914+ (Chordaria linearis ClinC8C monoicous)
CGACCGAGCACCGAGAGACAGAGCCGTCAACGCCTTTAGGGAGGATCCAT
CAGGGAGAAGGAAAGGGTCCTCACGCCACTGCTGCGAGTTTTATTTGCTG
CTGCAGGGCTACTGGTGGAGCTGTTGATAGCTTTTTGCCTGCCCTCGTTG
CCGGTTGGTCTAGCATACCGCGTTCCTGAGACAGCTTGTACACTTGTCCT
GGTATCTGCGCGGAGACCATGTCGACACAAGTGCTGAAAGAGCCTCTCCA
GGCCTTCGCCCAGATTATCATGGTGGGTGAATCATGGTTTGAGCTGGGGT
GCCATCCTTTGTTGAGGTTGATAGTCTATCAGTGAAGGTAGACGGAGCGT
ACCACAGCATGCACATCCCCCGCTGTGCGCGTTTACAGCAGTACATCCAG
CATGATGACCCTTGCCCATGTACAGAGCTTCATGACACCGGTAACAACCC
TTCATGAAACTTCCACTTGGGAAGTGCATGGTGGAAACTTTGATAGCCTA
TATACAAAAGGCAATGACGCAGGAAATCGCCGCAAACTTCCACAGAGCGT
TGTCCCATTCTGCGGCGGCGGCGGCGTACAGCAGTAGTATGGATGCCTCC
TGTGGGCCATCGTCCGTAGAGGTCGATGCTCTTCATATGTTAGGTATACA
TAGCTGACGCGGAGATTGAAGCATATTTAGAGCTCCAGTCGCGTGCATGC
TCCACCCTTTTCTTCGGAGTATACCACCGCCCCCCCCCCTCGCTCGTCAT
GGGTGATGTTGTGTTGCTACGCCAAAGCAGAGTGTCTCATACGAAATAAG
GGACATCTGAAGAAATCGCTATCCAATGAGCGGTTACCAAACTGATGCCT
TTCAATACGAAGACTGGCGATGTTCGGCGCTGCCGGTCAACTGCTGCTGT
GAAGTACATGAGTCGTGCAACCTCCGTACCCAACCAAGCTGCCCCGTGTT
TGTGCGATGCCATCATCAAAATGGAAAGGCGAAAAAGGTCATGTCTAACG
ACGAAGCACAGAAGGCGCTGGACGCCTCCTACGAAAGATTCGGGCAGCTC
GGGTTTGATCTCGGCGGGGCGATTTCCAAGGTGGACAAGATGCTCAGCGC
TATGGATGTGAGAGACGAATAAGTACAGCGATGCCAAGCAACGAATCTAG
TCTACACCCGTTTTGAGACCGTTGGGGGGTTTCATTTGTCGGGCTTGCGG
GCAGCGTGGTTGTTTTAAATTTTAAATGCACCGCGCCCAAACGGGGCATT
GGAAGCGCTTGAAAGGCGTGCGATGCTCGACGATTCCACCGGGTTGGTCT
GCATGAGCCGATCTCTGGGGCTCTCTGCTACTAGCTTGAAGACGGTCGAG
CGTTGAAGACGATCGATTGTCTGGGTGCCGATGCCTGGCTTCAGGACCCC
GTGCTTGTCTCGTGTGTTCAACACCGACGACATGTAGATAATGGGTGAAA
GAGTAAGAGGGAGGGCGGGTACGATAGAGGATATGGTCGTATTATAGTGA
GCATGGTTGCGCGCGCGCTCACACAACGTTAAATATCTGGCTGTTTTCGT
CCACCTTTGCAGTTATTTGCTTGGCCGGCTTATCTTGCAGCAGGGTGCTT
GTCGATGCACGTATGATATGCGGTGCGCCAGTCTCACGTTATCCTCCCGT
CCCTTTTGGCCTTGCTGTTCATATGCACGCTGTTCATGTTTGAAGATGGG
GGTGCGAAGTATGAAAGCGGCCGGACCTGGCGGAGAAATTTATCACTGTT
TCGTCAACAAGGTGTGGGGGCTCGAGGAGATTTTGAGAGAAACCTAGTCG
GGGCGCATTTCTGTATCTCGTTTGGTTCAGTGGGGCCGCCAAATGCTTGG
CTGGTTTGTACTCTATTTTTGTTTTTCGTCTTCACATTTATTTCCAGAGT
TCGCAGGGGCGCCTTGCCACGCGGGGCATCTTGCCAGAACATCTGAACCG
TGGTCGCACAGAAGGCTCCTCTCCCTGAGGCCCCCACCCACCTTCTGCGG
TGCTTGCCTGGTAATTTTGAACGCGAGAGAGTTTCAGCCATCTCTCCCTC
AAGTGTACACACGATCTCAGCGCTTTCCACTGACAGGAACGAAAGCGAGA
GAAAAAACTAACTTGTGTGAGAAAAAGTATTTTGCGCCGGGATTCAAACC
CGTGAACCTGCATGCTGCATGGATACGATGAGACCACTAGACCACCGGGG
CGACCGGCTCTATACGTGTGCTAAATGCACCCGTGCCGGTGCATTGCTGT
GCGCGTCCGAAGCTCCGCCCGATTATAATCCCCAGAGCATTTCCCAAAAA
CAAAAAGAGCCCGGACTTGGAAACTCGAAAAGTGATACTTGTTGTGGAGT
GATCTGCTACCCTTTCCAGCGTGACTGTATAGCCTTCACAACCAGTTGAA
GCCCATCATGCAAGGCGGTCTCCCCCTGACCTCAACGCCTAGCCCCCCGT
CGTCCCCTAGGGAATCAGTTTCTCTTGTCCAGTTGGACGGCAGGATTCCA
TACAGCAAGCGCTCAATATGGGGGCCGACAAGTGGTGGAGGGCCGCCACA
GAAGCAGAGCACCGTTTTGTTTAGCGTGCAATGACTGACCACGAGCGACT
GTGTACCTGTATTCCTTCTTTTCTTTTCTCAGACCGCTGACGAGATTGCA
AAACTGCACGGGTCCAAGCTGGCCGACTGGCAGATCAAGGTGTTCAAGGG
CATAATCGAAAAATTCGGGCAAGTACAGGAGGTGGTTGCCGCTTGTTCGC
TTAGACCTTGCAGCTTACGAAGTTTTGCCGACTTGAAGAGGCTGAGCCCT
GCGGAGCCTTTGGTTGTGGACGGGGGCAGAATTTAGCACCTAAACCATAA
AAGCAAACGGCTCGTGGCCAGCTGCTCATGTGTGCTTGCTTACAGTCCTC
TCGTGTGTTTGGTGTCGTGCTTCATGTGCAGTGAGGAGGAGAAGCTGGAG
CTGATGGAATTGCAAGAGCTCGCGCCGCACATCAAGAGTGAGACAGGCAA
CAAGAAGGAGGTGAGGAGAGACGCCATGTTTTGGTAGCAGACAGCTTTTT
TTTTTCCTTTGTCCCATGTCGGGGTTTTACGAGATGGATACGCGTTTTGA
CGTCGCCCAGCACGACGCCGTATGTTTCCGCCCTCTTACTCTCTGTGGCT
GCCGAGGTGCTTTCTCGCCGAACTTATTTGGATAGTCATCCTGGTACGTG
GCAGCTTGAGTTGTACAGGCGTGACGCGCACCGTGTTCTCGTCCTGAGCC
CGTGACTTCCAAACTCCTGACAAGGGAAACGTTCCTACATATTTACTTCG
AAGTATGTAGGGTCATGCTATTGCACCTCTACCTTGCCAGTTCGCTCCTC
AACGCTGCATATAGCATGCATGGTTTCACAGTAGTCGTTTTGCCTTTGGG
CTCAGGTGGTCCGTAGCTTGGGCTCAGCTGCTGCTGGCTGAACCCGTTGG
CAGGTTGACGTTGTTTTCGAGCGCACTCAGTCTCTCGATATCGCTTTCTC
ACTACGGTTTTCCGCCCCCTTACCTGTGGATATTCGGGCAACCTCGGCCG
AGGATGTTGTCTCGCTCGCTGTGCGACGTTGTGCATCGTTTCGGCACCCG
ATTGAATATCCTGCATTCAGTGCCAATGCTCGACCAAGGCGGTAGAACGT
TCCGAAAACCAGAGAGGACGCTCGATTTTGGGTTGAGAATGTCTTGTGTT
TGGAACGCACTGCCCCGAGGTGGTGATCTCCGCCGATGATAGTGTTTGTG
AAGGTGAATTGGTTCAGGGCGTATCGGTGTGTTTGCCCCTGTCATTCCCA
TGCTCTTACCGCTTCCGCGTGTACAATTGTTTCGTTGTCTCCGCCCTCGG
CCATGTCGCAGATGATAAAGTTGTTCGCAGACCAGCTGGTCGAAGACTAC
TGGCTGTCGGTGAGACCGGGTGTGGGGGTAAAAAGTTTTTTTCTTCGGCG
AGAGCGGATGCGGTACCATCAATCTCGGTTTTAACCGGGAGGTTGCCTCT
CCTTAGCTTACAAGACTTCCGCGTCGATCGATTGGACACCGTGCTTCCGC
GACCAGAACGGTCACTTTGCACTTTGCATCTTTTATAGCAAGAAGAAGCT
CGCGCTTAAAATACCTATTCCACGGAAGAGAGAAACGTCAAGCCAAAGCC
GACACGGAACGACTCCCAGAACAACGGAGCGCTTTTTGCTTTTGGCGTTT
TTCTCGCTGTACTGCTGTCGTTTTTTTGTCCAGTGTTGACACAACGACTG
ACGCTCTCCTACCCGGCACCACCGTGCGACATGTCCGATTGCATTGCGCG
TGCACAGCGTCCGGGTAACGACGTTTACTACCGGCTGGGGGTCAGGACGT
ACGTGGAGCTGCCCGAGTTGCTCAAGAGCTTCCAATTGGAAGTGCCGCAG
GTGGGTGGTTCCTTGGTTCAGAGTAGCCACGTTTCGAGGACCGCGCTTGC
TTACCCTTCACGCGGGTTGGTGTGTTCCGTGTTCCGGTATTCTGCTCGAC
GTGGCCGAGCAAACGACCTGTGCACCTCTCTCTCTCTGTGTGTGTTTCTT
CCCCCGTGTGCTCATTTCGACGGCCGTTTCGATTTCTTCGCCGTGAAGAT
GCGAAACCAGCTGACGCTCACCTCTGGGGGAAGACCGATTTTTTTTTTAA
GTTTTCCTTGGACGCTTGCCGATTCCGTCTTTTCCACTTACCGCAGTTCT
TTTCACCCTGTGAGGATGATGGCATAGTTTTGCTCGTCGTGCCTCTGTTG
CGGACAGAGCATGCTTGCCTTAGTGTGTTTCGCGGAAGATACGTCGCATG
TTGACAAGGCACTGCTATTCTCGAAGGACGAAGTTCCCATTGCCGTGCTT
GGTGCTCGTTACCGCCATGCCGGCATGCTTTTTTGTTTTCTGCGTGCTGC
TTCGAGTGAGGGCTGCATACCTTTTTCTCGTGCTGAGCTCTGTTCTCGTC
ATCGAGCAACTATTGACGCCGCGCCCTTGTATCCTCCGTAATTTTTTCCT
GTCGTTCTGAACCGCGATGGGCAGGTCATCTACCACTAATGCAGATGAGG
GCGTTGTCCTTACTGCTCTACGAAGAGAACTCCGGAAAGCTCCAGCAGAT
GTTTATATTTTGTGTTTCCAAGGTTCTGCCGGGTGCTTCTGACGCGACAA
GACATCGGGCCGGGGCCGGGGCCGAGGCTGTTTCTGGTTCTGTAGGCGGG
TGGTATCCTTGACTTTTCTTCGACCACGGCACACGCCAATAGTGCCGTCG
GCCGCATACGAGCGGGTGGAGTAGCTTTGCTTCGAATTAATCCTCTACGC
TGTTGCGTAGTGCTCGTGTCTAGCCTTCGACCGTGCTTGCTGTCTGTGCC
CGTGAAGCTGCAGTATGATGGCACTCAGCAAAGGTCCTTCGCAACGAGAT
TCATACATAGATGTTCTCGAGGTCGCCATGATGGATCAGCACACACGTAC
GAAACCAACGAGGGTTTCTGGCCAAACCAAGCACCGAGCCAACAGAGGCT
CTTCGAGAGAAAATCGACGAAGTCAAGTCTGCAGAGACCCGAGTCATGTA
CAGAGGCAAGTATGTACGAAAGTCGGTGTTTCCCTAGTATTGAGCGCCTG
CCACGTTGCGTAGATGTGTTTTGAACTTAAGGATATAGAGCAACTATCTA
AGCGACCACTCGCGCAAAGAGCTTGTAGTGCTTGCGGTGCTTAAGCCGGA
AGATCCAC

Coding sequence (CDS) from alignment at C-linearis_contig9:1639207..1644914+

>mRNA_C-linearis_contig9.16589.1 ID=mRNA_C-linearis_contig9.16589.1|Name=mRNA_C-linearis_contig9.16589.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at C-linearis_contig9:1639207..1644914+ (Chordaria linearis ClinC8C monoicous)
ATGTCGACACAAGTGCTGAAAGAGCCTCTCCAGGCCTTCGCCCAGATTAT
CATGATGTCGACACAAGTGCTGAAAGAGCCTCTCCAGGCCTTCGCCCAGA
TTATCATGGCGAAAAAGGTCATGTCTAACGACGAAGCACAGAAGGCGCTG
GACGCCTCCTACGAAAGATTCGGGCAGCTCGGGTTTGATCTCGGCGGGGC
GATTTCCAAGGTGGACAAGATGCTCAGCGCTATGGATGCGAAAAAGGTCA
TGTCTAACGACGAAGCACAGAAGGCGCTGGACGCCTCCTACGAAAGATTC
GGGCAGCTCGGGTTTGATCTCGGCGGGGCGATTTCCAAGGTGGACAAGAT
GCTCAGCGCTATGGATATGGGGGTGCGAAGTATGAAAGCGGCCGGACCTG
GCGGAGAAATTTATCACTGTTTCGTCAACAAGATGGGGGTGCGAAGTATG
AAAGCGGCCGGACCTGGCGGAGAAATTTATCACTGTTTCGTCAACAAGAC
CGCTGACGAGATTGCAAAACTGCACGGGTCCAAGCTGGCCGACTGGCAGA
TCAAGGTGTTCAAGGGCATAATCGAAAAATTCGGGCAAGTACAGGAGACC
GCTGACGAGATTGCAAAACTGCACGGGTCCAAGCTGGCCGACTGGCAGAT
CAAGGTGTTCAAGGGCATAATCGAAAAATTCGGGCAAGTACAGGAGGAGG
AGAAGCTGGAGCTGATGGAATTGCAAGAGCTCGCGCCGCACATCAAGAGT
GAGACAGGCAACAAGAAGGAGGAGGAGAAGCTGGAGCTGATGGAATTGCA
AGAGCTCGCGCCGCACATCAAGAGTGAGACAGGCAACAAGAAGGAGATGA
TAAAGTTGTTCGCAGACCAGCTGGTCGAAGACTACTGGCTGTCGATGATA
AAGTTGTTCGCAGACCAGCTGGTCGAAGACTACTGGCTGTCGCGTCCGGG
TAACGACGTTTACTACCGGCTGGGGGTCAGGACGTACGTGGAGCTGCCCG
AGTTGCTCAAGAGCTTCCAATTGGAAGTGCCGCAGCGTCCGGGTAACGAC
GTTTACTACCGGCTGGGGGTCAGGACGTACGTGGAGCTGCCCGAGTTGCT
CAAGAGCTTCCAATTGGAAGTGCCGCAGGTCATCTACCACTAAGTCATCT
ACCACTAA