prot_C-linearis_contig9.16589.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16589.1
Unique Nameprot_C-linearis_contig9.16589.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length193
Homology
BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 1.180e-93
Identity = 141/189 (74.60%), Postives = 166/189 (87.83%), Query Frame = 0
Query:    6 LKEPLQAFAQIIMAKKVMSNDEAQKALDASYERFGQLGFDLGGAISKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQIKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGN--KKEMIKLFADQLVEDYWLSRPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH 192
            L+EPLQAFAQI+MA+KVMS DEAQKALD SY+RFG+L F L  AISKVDKMLS+MDMGVRSMKA+GP G IYHCF+NKTADEIAKLHGSKL DWQ+K F+G+IEKF +  EE++LEL++LQ L  HIK++     K+EMIK FADQLV+D+WL+RPGNDV+YRLGVRTYVELPELLK+F LEVPQVI+H
Sbjct:    4 LREPLQAFAQILMARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAK-SEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQVIHH 191          
BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Match: A0A7S2VZL5_9STRA (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZL5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.800e-18
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query:   11 QAFAQIIMAKKVMSNDEAQKALDASYERF--GQLGFDLGGAISKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQIKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGNKKEMIKLFADQLVEDYWLS----RPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH 192
            QAF Q+++A +V+S ++AQ  L+A  +R   G L  DL   + +V++ L  MD+ VR+M  A P  E  H  VN  AD+IA+ HGSK+   +I+ F+  I   G+   E+K   +             G+  +  +   + +V+  WL+    R G     R+  R+++E+P+LL+S  +E PQ IYH
Sbjct:   24 QAFLQMLLAARVVSENKAQSMLEAVRDRMEAGSLPGDLETTLKRVNRALKLMDLEVRTM--ALPQQERVHAVVNLAADDIAEKHGSKMQHNEIRAFRNAISIIGECDGEDKWAAL-------------GDLNKADQAVVEDMVQRGWLAVDSQRRG-----RIAARSFLEIPDLLESHGIERPQFIYH 191          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16589.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK7_ECTSI1.180e-9374.60Non-structural maintenance of chromosomes element ... [more]
A0A7S2VZL5_9STRA5.800e-1832.98Non-structural maintenance of chromosomes element ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 11..130
e-value: 9.1E-10
score: 38.7
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 8..182
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 86..184
e-value: 2.0E-5
score: 26.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1639425..1644245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16589.1mRNA_C-linearis_contig9.16589.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1639207..1644914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16589.1 ID=prot_C-linearis_contig9.16589.1|Name=mRNA_C-linearis_contig9.16589.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=193bp
MSTQVLKEPLQAFAQIIMAKKVMSNDEAQKALDASYERFGQLGFDLGGAI
SKVDKMLSAMDMGVRSMKAAGPGGEIYHCFVNKTADEIAKLHGSKLADWQ
IKVFKGIIEKFGQVQEEEKLELMELQELAPHIKSETGNKKEMIKLFADQL
VEDYWLSRPGNDVYYRLGVRTYVELPELLKSFQLEVPQVIYH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1
IPR036388WH-like_DNA-bd_sf