mRNA_C-linearis_contig9.16587.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.770e-20 Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = -1
Query: 123 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTLT----------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAA-------------CSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSR 449
A A ELK GWTPL AA ++R + ALL+ ++ LH AC Q+E LAA++D+LLR GAD+T N G+ CSP++++RA+ LL RAP DR WRRR WLV+LRSR
Sbjct: 297 ARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.410e-14 Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = -1
Query: 81 PLCVAAFYNRCEAMRALLRRERTLT---------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGCDNGEV 407
PL A +AM LL +LT LH+AC Q + L A VD+LLR GAD+T +NN G+ CS ++ R + LLARAP DRAWRRR WLVMLRS A +K + G+
Sbjct: 309 PLFSATDPRNLKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDA 441
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 3.720e-14 Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = -1
Query: 108 AGARIELKDSDGWTPLCVAA-FYNRCEAMRALLRR--------ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNN------------DGQAACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSK 449
AGA ++ K TPLCVA F +A+ LLRR ++T+ LHLAC T A VD+LLR G + T++ +G ++ ++ERA LLA AP DRAWRRR WLVMLR+R R +
Sbjct: 291 AGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTM-LHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 8.020e-14 Identity = 54/149 (36.24%), Postives = 74/149 (49.66%), Query Frame = -1
Query: 75 GARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAAC---------------SPED-MERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGC---------DNGEVSG 446
GA++ ++ + G+TPL H C + E L AAVD+LLR GAD+TT+N G + +P+D ++R + LL+RAP DRAWRRR WLVMLRSR S+++ C D GEV G
Sbjct: 8 GAQVGVRGNQGYTPL------------------------HETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGGEVGG 132
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.370e-13 Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = -1
Query: 81 PLCVAAFYNRCEAMRALLRRERTLT---------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGCDNGEV 407
PL A +AM LL +LT LHLAC Q L A VD+LLR GAD+T +NNDG+ CS ++ER + LLARAP D+A RRR WLVMLRS A ++ + G+
Sbjct: 523 PLFSATDPRNLKAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDA 655
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 4.200e-13 Identity = 48/106 (45.28%), Postives = 58/106 (54.72%), Query Frame = -1
Query: 87 ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA--------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRS-----RASRSKTAGCDNG 347
E T LH AC Q + A VD+LL+ GAD+T V+NDG CS ++ R + LLARAP +RAWRRR WLVMLRS RA+ KT D G
Sbjct: 279 EGTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEG 384
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 2.060e-12 Identity = 57/146 (39.04%), Postives = 74/146 (50.68%), Query Frame = -1
Query: 105 AGARIELKDS--DGWTPLCVAAFYNRCEAMRALLRR---------ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAACS--------------------PEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKT 449
AGA I++K S DG T L AA EA+ ALLRR + + LHL + A VD+LLR GA + V+ +G+A PE +ERA +LLARAP DR WRRR WL+MLR R ++ +T
Sbjct: 278 AGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPE-LERAIELLARAPADRTWRRRCWLIMLRERTNKERT 422
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 4.010e-12 Identity = 51/128 (39.84%), Postives = 67/128 (52.34%), Query Frame = -1
Query: 123 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTL--------TLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAACS-----PEDMERAQ------QLLARAPNDRAWRRRYWLVMLRSR 449
AGA E++D + TPL +AA+ A+ LL + LH AC + AA V LLR GAD+T + DG + E +ERA+ ++L RAP DRAWRRR WLVMLR+R
Sbjct: 58 AGAHTEVRDRNNDTPLLLAAWLGHATAIAKLLASGARVDADGIPRSALHCAC---MQGHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAEDIVLIREMLRRAPADRAWRRRGWLVMLRNR 182
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.760e-11 Identity = 55/136 (40.44%), Postives = 70/136 (51.47%), Query Frame = -1
Query: 102 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLR------RERTLT-LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQ-------------AACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTA 449
AG IE + G TPL AAF CEAM ALL+ + T+ L C +E A D+LLR GAD+T V++D + A S + +ER +LLARAP DRAWRRR +LV S R + A
Sbjct: 114 AGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLA 249
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 4.320e-11 Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = -1
Query: 87 LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRS-----RASRSKTAGCDNG 332
LH AC Q + A VD+LLR GAD+T ++ND + CS ++E+ + L+ARAP +RAWRRR WLVMLRS RA+ T D G
Sbjct: 261 LHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATTEATGDADEG 362 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16587.1 >prot_C-linearis_contig9.16587.1 ID=prot_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=129bp PPVWSPAVALEPPLPPRLSSSTGPCPLTSPLSQPAVFDLEARERSITSQYback to top mRNA from alignment at C-linearis_contig9:1633255..1633739- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16587.1 ID=mRNA_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=485bp|location=Sequence derived from alignment at C-linearis_contig9:1633255..1633739- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1633255..1633739- >mRNA_C-linearis_contig9.16587.1 ID=mRNA_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at C-linearis_contig9:1633255..1633739- (Chordaria linearis ClinC8C monoicous)back to top |