mRNA_C-linearis_contig9.16587.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16587.1
Unique NamemRNA_C-linearis_contig9.16587.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.770e-20
Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = -1
Query:  123 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTLT----------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAA-------------CSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSR 449
            A A  ELK   GWTPL  AA ++R   + ALL+   ++           LH AC  Q+E LAA++D+LLR GAD+T  N  G+               CSP++++RA+ LL RAP DR WRRR WLV+LRSR
Sbjct:  297 ARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.410e-14
Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = -1
Query:   81 PLCVAAFYNRCEAMRALLRRERTLT---------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGCDNGEV 407
            PL  A      +AM  LL    +LT         LH+AC  Q + L A VD+LLR GAD+T +NN G+                 CS  ++ R + LLARAP DRAWRRR WLVMLRS A  +K    + G+ 
Sbjct:  309 PLFSATDPRNLKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATTDETGDA 441          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.720e-14
Identity = 55/135 (40.74%), Postives = 73/135 (54.07%), Query Frame = -1
Query:  108 AGARIELKDSDGWTPLCVAA-FYNRCEAMRALLRR--------ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNN------------DGQAACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSK 449
            AGA ++ K     TPLCVA  F    +A+  LLRR        ++T+ LHLAC T      A VD+LLR G  + T++             +G ++    ++ERA  LLA AP DRAWRRR WLVMLR+R  R +
Sbjct:  291 AGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTM-LHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 8.020e-14
Identity = 54/149 (36.24%), Postives = 74/149 (49.66%), Query Frame = -1
Query:   75 GARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAAC---------------SPED-MERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGC---------DNGEVSG 446
            GA++ ++ + G+TPL                        H  C  + E L AAVD+LLR GAD+TT+N  G +                 +P+D ++R + LL+RAP DRAWRRR WLVMLRSR S+++   C         D GEV G
Sbjct:    8 GAQVGVRGNQGYTPL------------------------HETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSGGYDHGDGGEVGG 132          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.370e-13
Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = -1
Query:   81 PLCVAAFYNRCEAMRALLRRERTLT---------LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTAGCDNGEV 407
            PL  A      +AM  LL    +LT         LHLAC  Q   L A VD+LLR GAD+T +NNDG+                 CS  ++ER + LLARAP D+A RRR WLVMLRS A  ++    + G+ 
Sbjct:  523 PLFSATDPRNLKAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDA 655          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.200e-13
Identity = 48/106 (45.28%), Postives = 58/106 (54.72%), Query Frame = -1
Query:   87 ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA--------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRS-----RASRSKTAGCDNG 347
            E T  LH AC  Q   + A VD+LL+ GAD+T V+NDG                 CS  ++ R + LLARAP +RAWRRR WLVMLRS     RA+  KT   D G
Sbjct:  279 EGTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEG 384          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.060e-12
Identity = 57/146 (39.04%), Postives = 74/146 (50.68%), Query Frame = -1
Query:  105 AGARIELKDS--DGWTPLCVAAFYNRCEAMRALLRR---------ERTLTLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAACS--------------------PEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKT 449
            AGA I++K S  DG T L  AA     EA+ ALLRR         + +  LHL    +  A    VD+LLR GA +  V+ +G+A                       PE +ERA +LLARAP DR WRRR WL+MLR R ++ +T
Sbjct:  278 AGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPE-LERAIELLARAPADRTWRRRCWLIMLRERTNKERT 422          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.010e-12
Identity = 51/128 (39.84%), Postives = 67/128 (52.34%), Query Frame = -1
Query:  123 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLRRERTL--------TLHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQAACS-----PEDMERAQ------QLLARAPNDRAWRRRYWLVMLRSR 449
            AGA  E++D +  TPL +AA+     A+  LL     +         LH AC    +  AA V  LLR GAD+T  + DG +         E +ERA+      ++L RAP DRAWRRR WLVMLR+R
Sbjct:   58 AGAHTEVRDRNNDTPLLLAAWLGHATAIAKLLASGARVDADGIPRSALHCAC---MQGHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAEDIVLIREMLRRAPADRAWRRRGWLVMLRNR 182          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-11
Identity = 55/136 (40.44%), Postives = 70/136 (51.47%), Query Frame = -1
Query:  102 AGARIELKDSDGWTPLCVAAFYNRCEAMRALLR------RERTLT-LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQ-------------AACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRSRASRSKTA 449
            AG  IE +   G TPL  AAF   CEAM ALL+       + T+  L   C   +E    A D+LLR GAD+T V++D +             A  S + +ER  +LLARAP DRAWRRR +LV   S   R + A
Sbjct:  114 AGVYIEGRSPKGRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLA 249          
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.320e-11
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = -1
Query:   87 LHLACRTQQEALAAAVDVLLRSGADQTTVNNDGQA---------------ACSPEDMERAQQLLARAPNDRAWRRRYWLVMLRS-----RASRSKTAGCDNG 332
            LH AC  Q   + A VD+LLR GAD+T ++ND +                 CS  ++E+ + L+ARAP +RAWRRR WLVMLRS     RA+   T   D G
Sbjct:  261 LHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATTEATGDADEG 362          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL7_ECTSI3.770e-2043.94Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI1.410e-1440.60Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI3.720e-1440.74Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LNI8_ECTSI8.020e-1436.24EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JWW4_9PHAE1.370e-1340.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI4.200e-1345.28Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FXA8_ECTSI2.060e-1239.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0H9_ECTSI4.010e-1239.84Ankyrin repeat domain protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KFY7_9PHAE1.760e-1140.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY1_9PHAE4.320e-1142.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1633255..1633739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size450
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16587.1prot_C-linearis_contig9.16587.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1633317..1633739 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930702.072091-UTR-C-linearis_contig9:1633254..16333161622930702.072091-UTR-C-linearis_contig9:1633254..1633316Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1633255..1633316 -
1690881205.0025122-UTR-C-linearis_contig9:1633254..16333161690881205.0025122-UTR-C-linearis_contig9:1633254..1633316Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1633255..1633316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930702.0923328-CDS-C-linearis_contig9:1633316..16334751622930702.0923328-CDS-C-linearis_contig9:1633316..1633475Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1633317..1633475 -
1690881205.0119097-CDS-C-linearis_contig9:1633316..16334751690881205.0119097-CDS-C-linearis_contig9:1633316..1633475Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1633317..1633475 -
1622930702.1099248-CDS-C-linearis_contig9:1633511..16337391622930702.1099248-CDS-C-linearis_contig9:1633511..1633739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1633512..1633739 -
1690881205.020285-CDS-C-linearis_contig9:1633511..16337391690881205.020285-CDS-C-linearis_contig9:1633511..1633739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1633512..1633739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16587.1

>prot_C-linearis_contig9.16587.1 ID=prot_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=129bp
PPVWSPAVALEPPLPPRLSSSTGPCPLTSPLSQPAVFDLEARERSITSQY
RRRHALSFGARARSCCARSISSGEHAAWPSLFTVVWSAPDRNRTSTAAAR
ASCCVRQARCNVSVRSRRKRARMASHRL*
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mRNA from alignment at C-linearis_contig9:1633255..1633739-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16587.1 ID=mRNA_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=485bp|location=Sequence derived from alignment at C-linearis_contig9:1633255..1633739- (Chordaria linearis ClinC8C monoicous)
CCACCCGTATGGTCACCCGCTGTCGCATTGGAACCTCCACTCCCCCCTCG GCTATCTTCGTCGACTGGGCCGTGCCCGCTAACTTCACCATTGTCACAAC CAGCTGTCTTTGACCTAGAAGCGCGAGAGCGGAGCATCACAAGCCAGTAC CGGCGACGCCATGCCCTGTCGTTCGGAGCACGGGCCAGAAGCTGTTGTGC CCGTTCCATATCTTCTGGGGAGCACGCGGTTTTCAGAAAGGCCACTTCCA GCACATTTGCTGAGGCCTGGCCATCGTTGTTCACGGTTGTCTGGTCCGCT CCTGATCGCAACAGGACGTCCACGGCCGCGGCCAGGGCTTCTTGCTGCGT ACGGCAGGCTAGGTGCAACGTGAGCGTTCGCTCACGGCGCAAGAGGGCGC GCATGGCTTCGCACCGGTTATAAAACGCGGCAACACAAAGAGGCGTCCAT CCATCCGAATCCTTCAGCTCGATCCTTGCTCCTGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:1633255..1633739-

>mRNA_C-linearis_contig9.16587.1 ID=mRNA_C-linearis_contig9.16587.1|Name=mRNA_C-linearis_contig9.16587.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at C-linearis_contig9:1633255..1633739- (Chordaria linearis ClinC8C monoicous)
CCACCCGTATGGTCACCCGCTGTCGCATTGGAACCTCCACTCCCCCCTCG
GCTATCTTCGTCGACTGGGCCGTGCCCGCTAACTTCACCATTGTCACAAC
CAGCTGTCTTTGACCTAGAAGCGCGAGAGCGGAGCATCACAAGCCAGTAC
CGGCGACGCCATGCCCTGTCGTTCGGAGCACGGGCCAGAAGCTGTTGTGC
CCGTTCCATATCTTCTGGGGAGCACGCGCCACCCGTATGGTCACCCGCTG
TCGCATTGGAACCTCCACTCCCCCCTCGGCTATCTTCGTCGACTGGGCCG
TGCCCGCTAACTTCACCATTGTCACAACCAGCTGTCTTTGACCTAGAAGC
GCGAGAGCGGAGCATCACAAGCCAGTACCGGCGACGCCATGCCCTGTCGT
TCGGAGCACGGGCCAGAAGCTGTTGTGCCCGTTCCATATCTTCTGGGGAG
CACGCGGCCTGGCCATCGTTGTTCACGGTTGTCTGGTCCGCTCCTGATCG
CAACAGGACGTCCACGGCCGCGGCCAGGGCTTCTTGCTGCGTACGGCAGG
CTAGGTGCAACGTGAGCGTTCGCTCACGGCGCAAGAGGGCGCGCATGGCT
TCGCACCGGTTATAAGCCTGGCCATCGTTGTTCACGGTTGTCTGGTCCGC
TCCTGATCGCAACAGGACGTCCACGGCCGCGGCCAGGGCTTCTTGCTGCG
TACGGCAGGCTAGGTGCAACGTGAGCGTTCGCTCACGGCGCAAGAGGGCG
CGCATGGCTTCGCACCGGTTATAA
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