mRNA_C-linearis_contig9.16583.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16583.1
Unique NamemRNA_C-linearis_contig9.16583.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.250e-20
Identity = 65/131 (49.62%), Postives = 78/131 (59.54%), Query Frame = 3 
Query:  702 ELKDVGAWTPLCLDATSCRCIAVRARLRHVANAHARNN---DGNTPLHLACRTQQEALDTTVDLLLRSWADEPTANNNGKVPARMLESPRPW-PSCSPKYLEQERLLLGRAANDRAWRRRCWLVMLRSRTF 1082
            ELK VG WTPL   A   R   V A L++  NA  RN     G+TPLH AC  Q+E L  ++DLLLR  ADE   N  G+ P  +L + R   P CSP  +++ RLLL RA  DR WRRR WLV+LRSRT 
Sbjct:  302 ELKSVGGWTPLHAAAEHHRVNCVAALLQN--NASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTI 430
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.150e-19
Identity = 60/122 (49.18%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:    4 GCEGRTLFHAAAVGGNA*VVSALVDAGAQPDVNVVLPSSGKSALYMATELGHEDAARCLVKAAPDVNSRDAEDECDVLFTEAERDCGQLVDDLLDGGADPNTL--HGWQRCTPLQMAVKSAL 363
            GC GR+L  AAA+GGNA V+SAL+ AG  PDVNVV  S+G+SALY +    HE AAR L+ A  DVN  D  D+   LF   +  C  LV +LL  GA+PN +  H +   TPL  A K  L
Sbjct:   64 GCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGL 185
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.810e-19
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 3 
Query:  702 ELKDVGAWTPLCLDATSCRCI-AVRARLRHVANAHARNNDGNTPLHLACRTQQEALDTTVDLLLRSWADEPTANNNGKVPARMLE---SPRPWPSCSPKYLEQERLLLGRAANDRAWRRRCWLVMLRS--RTFRART 1094
            E  + G+  P    AT  R + A+   L H A+  A++ +GNTPLH+AC  Q + L+  VDLLLR  ADE   NN GK PA +L+   +     +CS   + + R+LL RA  DRAWRRRCWLVMLRS  RT +A T
Sbjct:  299 ESSEGGSLAPPLFSATDPRNLKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATT 435
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.040e-16
Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    4 GCEGRTLFHAAAVGGNA*VVSALVDAGAQPDVNVVLPSSGKSALYMATELGHEDAARCLVKAAPDVNSRDAEDECDVLFTEAERDCGQLVDDLLDGGADPN 306
            GC GRTL  AAA+GGNA V+SAL+  GA  DVN V  SS +SAL+ AT  GHE AA+ LV    DVN RD   +C VL    +    QLV+DL  GGA PN
Sbjct:   66 GCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPN 166
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-15
Identity = 64/164 (39.02%), Postives = 79/164 (48.17%), Query Frame = 3 
Query:  768 VRARLRHVANAHARNNDGNTPLHLACRTQQEALDTTVDLLLRSWADEPTANNNGKVPARML---------ESPRPWPSCSPKYLEQERLLLGRAANDRAWRRRCWLVMLRSRTFRARTAGCDNRGVTGYESIGADAQGEGGHPGCGGARTRLGIRVAWLRRPAT 1232
            + A  +H A    R N G TPLH  C  + E L+  VD+LLR  ADE T N  G  PA  L          +P P        +++ RLLL RA  DRAWRRR WLVMLRSR  +A+   C + G  GY+       G+GG  G        G+  A   RP T
Sbjct:    1 MHALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDE-----IDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSG--GYD------HGDGGEVGGSEMARSEGMAGADYGRPGT 151
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.960e-14
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 3 
Query:  819 GNTPLHLACRTQQEALDTTVDLLLRSWADEPTANNNGKVPARMLE---SPRPWPSCSPKYLEQERLLLGRAANDRAWRRRCWLVMLRS--RTFRART 1094
            G TPLH AC  Q   ++ TVDLLLR  ADE   +N+ K PA +L+   +     +CS   +EQ RLL+ RA  +RAWRRRCWLVMLRS  +T RA T
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATT 353
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 9.300e-13
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    4 GCEGRTLFHAAAVGGNA*VVSALVDAGAQPDVNVVLPSSGKSALYMATELGHEDAARCLVKAAPDVNSRD 213
            GC GRTL  AAA+GG+  VVSAL+ AGAQPDVNVV  SS +S+LY AT  GH+DAAR L+ A  DVN  D
Sbjct:   66 GCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFED 135
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BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.920e-11
Identity = 60/162 (37.04%), Postives = 76/162 (46.91%), Query Frame = 3 
Query:  810 NNDGNTPLHLACRTQQEALDTTVDLLLRSWADEPTANNNGKVPARMLES---PRPWPSCSPKYLEQERLLLGRAANDRAWRRRCWLVMLRSRTFRARTAGCDNRGVTGYESIGA---------DAQGEGGHPGCGGARTRL-GIRVAWLRRPATGVRLVSVA 1256
            + DGNTPLH AC  + + ++ TVDLLLR            + P  ML+         +CS    E+ RLLL RA  +RAWR RCWLVMLRS    AR A  D  G    +S  A          A+ E G    GG R+R+ G     + R A G   V  +
Sbjct:  275 DTDGNTPLHRACYWRDKGMEATVDLLLRXXXXXXXXXXXXQTPVDMLDEHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRSCAKTAR-ANSDATGDADEDSNDARDRKVGKCKGARRENGESAGGGVRSRMNGAGEGGVERRAGGWASVVAS 435
[Close]
BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.850e-10
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:    4 GCEGRTLFHAAAVGGNA*VVSALVDAGAQPDVNVVLPSSGKSALYMATELGHEDAARCLVKAAPDVNSRDAEDECDVLFTEAERDCGQLVDDLLDGGADPNTLHGWQRCTPLQMA 348
            GC  RT+  AAA+GGNA VV+ L+ +   PDVNVV  SS +SAL++A    HE AAR L+ A  D +  D  +        AE     LVD+ L GGA PN+     R TPL +A
Sbjct:   66 GCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACPNSRSRVGR-TPLHLA 179
[Close]
BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-9
Identity = 44/93 (47.31%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    4 GCEGRTLFHAAAVGGNA*VVSALVDAGAQPDVNVVLPSSGKSALYMATELGHEDAARCLVKAAPDVNSRDAEDECDVLFTEAERDCGQLVDDL 282
            GC  R+L  AAAVGGN  VVS  ++AGA+PDV VV  SS  SAL      GHED AR LV A  DVN  D   +             QLV D+
Sbjct:  109 GCRDRSLIDAAAVGGNVDVVSGFLEAGAEPDVQVVSWSSKTSALCTPVRFGHEDVARRLVTAGADVNFVDPMRKSPAFAQATRAGYEQLVGDI 201
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FLL7_ECTSI9.250e-2049.62Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FXA8_ECTSI4.150e-1949.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS36_ECTSI4.810e-1945.99Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNQ1_9PHAE7.040e-1654.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI8_ECTSI1.250e-1539.02EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JRY1_9PHAE1.960e-1451.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI9.300e-1364.29Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRS0_ECTSI4.920e-1137.04Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JY41_9PHAE1.850e-1044.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW91_9PHAE1.250e-947.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1621292..1624622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue8.9e-20
Seed eggNOG ortholog2880.D8LS36
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size2047
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16583.1prot_C-linearis_contig9.16583.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1621732..1622562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.1228125-UTR-C-linearis_contig9:1621291..16217311622930737.1228125-UTR-C-linearis_contig9:1621291..1621731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1621292..1621731 +
1690881223.2795632-UTR-C-linearis_contig9:1621291..16217311690881223.2795632-UTR-C-linearis_contig9:1621291..1621731Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1621292..1621731 +
1622930737.1625645-UTR-C-linearis_contig9:1622562..16226621622930737.1625645-UTR-C-linearis_contig9:1622562..1622662Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1622563..1622662 +
1690881223.3004372-UTR-C-linearis_contig9:1622562..16226621690881223.3004372-UTR-C-linearis_contig9:1622562..1622662Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1622563..1622662 +
1622930737.1820228-UTR-C-linearis_contig9:1623520..16236401622930737.1820228-UTR-C-linearis_contig9:1623520..1623640Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1623521..1623640 +
1690881223.3099396-UTR-C-linearis_contig9:1623520..16236401690881223.3099396-UTR-C-linearis_contig9:1623520..1623640Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1623521..1623640 +
1622930737.2034795-UTR-C-linearis_contig9:1624066..16246221622930737.2034795-UTR-C-linearis_contig9:1624066..1624622Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1624067..1624622 +
1690881223.326338-UTR-C-linearis_contig9:1624066..16246221690881223.326338-UTR-C-linearis_contig9:1624066..1624622Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1624067..1624622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.1455076-CDS-C-linearis_contig9:1621731..16225621622930737.1455076-CDS-C-linearis_contig9:1621731..1622562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1621732..1622562 +
1690881223.291367-CDS-C-linearis_contig9:1621731..16225621690881223.291367-CDS-C-linearis_contig9:1621731..1622562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1621732..1622562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16583.1

>prot_C-linearis_contig9.16583.1 ID=prot_C-linearis_contig9.16583.1|Name=mRNA_C-linearis_contig9.16583.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=277bp
MAADAGHLIVVNSLLAAGADVEIQDRCGYTALNNSPGEGHVGILKAILRP
GVDANAANEDGRPALHVAAEDGQADAIDVLIEAGADIELKDVGAWTPLCL
DATSCRCIAVRARLRHVANAHARNNDGNTPLHLACRTQQEALDTTVDLLL
RSWADEPTANNNGKVPARMLESPRPWPSCSPKYLEQERLLLGRAANDRAW
RRRCWLVMLRSRTFRARTAGCDNRGVTGYESIGADAQGEGGHPGCGGART
RLGIRVAWLRRPATGVRLVSVARTEA*
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mRNA from alignment at C-linearis_contig9:1621292..1624622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16583.1 ID=mRNA_C-linearis_contig9.16583.1|Name=mRNA_C-linearis_contig9.16583.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3331bp|location=Sequence derived from alignment at C-linearis_contig9:1621292..1624622+ (Chordaria linearis ClinC8C monoicous)
GGGGGTTGTGAGGGACGTACCCTGTTCCATGCGGCTGCTGTAGGTGGAAA
CGCGTAGGTGGTGTCTGCCTTGGTTGATGCAGGTGCTCAGCCGGACGTGA
ACGTAGTGTTGCCTTCGTCCGGGAAGTCGGCGCTTTACATGGCAACAGAA
CTCGGTCATGAGGATGCAGCGAGGTGTTTGGTCAAGGCAGCGCCCGACGT
CAACTCTCGGGACGCTGAAGATGAGTGTGATGTCCTTTTTACGGAAGCTG
AGCGCGACTGTGGGCAGCTGGTGGACGACCTGCTTGACGGTGGGGCTGAT
CCAAACACTCTTCATGGCTGGCAGCGCTGCACTCCACTCCAAATGGCCGT
GAAGTCTGCGTTGAAGGAATTGGGTCGACCCTCTTGGCCAGGGGAGCGGA
CAAGGATGAAGTCAATGGCAATGGAGAGTCACCTCTCATTATGGCTGCCG
ACGCGGGTCATCTGATTGTGGTGAACAGTTTGTTGGCGGCCGGTGCAGAT
GTTGAGATTCAAGATCGTTGCGGCTACACGGCGCTGAACAATTCCCCTGG
AGAAGGACACGTTGGAATTCTCAAAGCCATCCTCAGGCCCGGAGTGGACG
CCAATGCTGCTAACGAAGATGGACGTCCTGCACTGCACGTTGCTGCTGAA
GATGGACAAGCGGATGCCATCGACGTGTTGATCGAGGCAGGAGCGGACAT
AGAGCTGAAGGATGTTGGTGCATGGACGCCTCTGTGTCTTGACGCAACTA
GTTGCCGGTGCATAGCCGTGCGCGCCCGCTTGCGCCATGTAGCGAACGCT
CACGCACGGAACAACGATGGAAACACGCCATTGCACCTAGCCTGCCGTAC
ACAGCAAGAAGCCCTGGACACGACCGTGGACCTTCTGTTGCGATCTTGGG
CGGACGAGCCAACCGCAAACAACAACGGGAAGGTCCCAGCGCGAATGCTG
GAATCGCCACGGCCTTGGCCCAGTTGCTCCCCAAAATATCTCGAACAGGA
ACGGCTGCTTCTGGGCCGCGCTGCGAACGACAGGGCGTGGCGTCGCCGAT
GCTGGCTTGTGATGCTTCGCTCTCGCACTTTTCGGGCAAGGACAGCTGGG
TGTGACAATCGTGGCGTTACCGGGTATGAATCAATTGGCGCTGATGCCCA
AGGAGAAGGTGGACATCCAGGATGCGGAGGAGCGAGAACACGACTGGGGA
TAAGAGTGGCGTGGTTGCGCAGGCCGGCAACGGGTGTGCGGTTGGTTTCG
GTGGCGAGGACGGAGGCTTGAGAGCTGTGACGGGGTCACTGATCGGGCTG
GAACTAGAGGGTGTCTTTCGCACGGTCGTGGGCTTTCTGTGAAGACGAAT
GACGCCAAGGCGGACCTTGGGGTGAGTCCGGTCCACATTTGCGAGGGTAA
ATTACACGCGAACCATGTGCCGTGTTGCACGCTTACGTTACCGCCAAACA
AGCAGTCGACGGTGGATGCATTGCAGGGTGCACGATAAAGGTCTTGTTTC
TCTTGACAAGATTATATTTTTCTTGTGATCGCATTCGCTGCCGCTCTTTC
GGCAGGTACGGCCGTTGTGTCTGCGTTGTCCGCGGTGGCTTTCGAACGTT
TCAGCTTGTGCCGAACATGGGTCTAGAGACATCCCATTTTGCGCGTTCAC
CTAGGTCCGTGCGACGCATGTGTCGGTGCTCATGCGTCCTTCGAAGACCG
CAACGAGCTTGTTGCCTTGCTTCAAAAGCGATTCTTGATCTCCAAAAAAT
AGCCGCTGTTCTCATAAGTGGTTTAGTCACAGAGCCTTCTGCACCTGTGC
CTTTGTTTGACTTGGAAGGGTTGATTGCAGACGTGCCCGCCGATCGGGGG
GGCACTTACTAACTTAATGGCGAAAACGTTTTGCGTTTTGCTCGCGATAT
GTCGCCATGAAATATGACAGCGATCAAACCATGGAGCCTCGTTCTGGTGC
TCAACAGGCGTAGCTGCAGGCACGCAGGCAAGAAGTACGTGTAGAGCACG
AGCGAAGTGCGGAGCCGATCCTGATAACACACACCCCGGCACTTGTACTG
CCATGCCCCCCGCCGTTTTCCGCTTACCAGTGTTTGCGAAATGCCTCTAC
TCGTCAAACGCCGTCTTTTTGCTACTGGTACATCGGTGTAGCCTGTTTCT
TACCTCACGGCCCTTTCTCCGTACGTTTCATCCGGCTGCCTCCCCAAACG
ACCCCCCCCGTCTTCTTCCCACTGGCAAGGGTGTGCATCTTGGAGCCAAG
TTAATACGAGACGGACACCACGGACGGGGTCTTGCGAGGCGGAGACGGTT
GCAGGCGGTCTGCGCTAACGGCATGCAGTCCCTACAAAATCGCCCGAAAG
TGAGTACACGAATGTAGGAGCTCAAAGGGTAGGGGGGGCGAGGTGCGGAC
GGGCAAAGGAGATGGGTGCCTTTTTTATTGGTATCGATCAGCTTACTAGC
TTCGACTTCGTCCGTTTCAAGTATGGTAGCCAAGGCTTCCCCCTGGCAGT
GATCACACCGGGGGAGGAACAGGCCATCTAGACTGCCGCTCAAGCGAGTC
TCGCGATGCAACTCACTCCTCTTGCGTGTAGTGTTTGCCGAACAACACAC
GGCGCGTCGAACGTGGCCCTGGTGCGGCGAGAGGCCGTTTGCACCACGCC
CCGGCCCTTTAGAGAGGAAACGATCAGTGTATCAGCAGCCGCATCCAGGT
AGACGACGATGGCGAAAGAAGCAACCGCACCTGACCCGCAGCCCCCGTCC
TGCACCGTTGCCGGCGAAATGAAAGAGCCGGATCCCTACGAGTTCCACCG
CCGTACTTACGAGATCGGAGAGCTTCCAACAGGCGCGAGCTGCGGCAGGC
GAAGAAGGAGTATATGGGCCGCAGCTGAGGGAAATGCTGGCAAGAGCAAG
AGGACGGCTACGACGAGGACGAGGACGAGGACGAGGACTAGGGCTTCATA
GAGGAGGATCCTGCTCTGTTCAAAGGCCAGTATTAGTGCCTCTATTTCTT
GGGTGTTTTACTGGCCGTCCCGTCTCGCTGGTCTCTTTTTTATGTTGGTG
CTCAGCCTTCAAACTCATTTTCCCGTATGGATTTGTATGGATGGGAGGGG
TCTGAAGCGCCCGCGAATCGCTTCTCTCTCTCTCTCTCTCTCTGGTTCGT
TCCAGTTCGCTTCAAAACAAGTCCTGCCTCTCCCGGGCTGTTGAGGACAG
CTGTTGCAGTTGTACATACGTGTCTTTTGCAAGGCTGGTGAGTGACTAAG
CCGTAAGAGTTGCTTGTGCGTTGGACCTCGTGTGAGGTGGGAAGGGGGGG
GGTAGCGCGTTTGGAGTTGCGGATATCCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1621292..1624622+

>mRNA_C-linearis_contig9.16583.1 ID=mRNA_C-linearis_contig9.16583.1|Name=mRNA_C-linearis_contig9.16583.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at C-linearis_contig9:1621292..1624622+ (Chordaria linearis ClinC8C monoicous)
ATGGCTGCCGACGCGGGTCATCTGATTGTGGTGAACAGTTTGTTGGCGGC
CGGTGCAGATGTTGAGATTCAAGATCGTTGCGGCTACACGGCGCTGAACA
ATTCCCCTGGAGAAGGACACGTTGGAATTCTCAAAGCCATCCTCAGGCCC
GGAGTGGACGCCAATGCTGCTAACGAAGATGGACGTCCTGCACTGCACGT
TGCTGCTGAAGATGGACAAGCGGATGCCATCGACGTGTTGATCGAGGCAG
GAGCGGACATAGAGCTGAAGGATGTTGGTGCATGGACGCCTCTGTGTCTT
GACGCAACTAGTTGCCGGTGCATAGCCGTGCGCGCCCGCTTGCGCCATGT
AGCGAACGCTCACGCACGGAACAACGATGGAAACACGCCATTGCACCTAG
CCTGCCGTACACAGCAAGAAGCCCTGGACACGACCGTGGACCTTCTGTTG
CGATCTTGGGCGGACGAGCCAACCGCAAACAACAACGGGAAGGTCCCAGC
GCGAATGCTGGAATCGCCACGGCCTTGGCCCAGTTGCTCCCCAAAATATC
TCGAACAGGAACGGCTGCTTCTGGGCCGCGCTGCGAACGACAGGGCGTGG
CGTCGCCGATGCTGGCTTGTGATGCTTCGCTCTCGCACTTTTCGGGCAAG
GACAGCTGGGTGTGACAATCGTGGCGTTACCGGGTATGAATCAATTGGCG
CTGATGCCCAAGGAGAAGGTGGACATCCAGGATGCGGAGGAGCGAGAACA
CGACTGGGGATAAGAGTGGCGTGGTTGCGCAGGCCGGCAACGGGTGTGCG
GTTGGTTTCGGTGGCGAGGACGGAGGCTTGAATGGCTGCCGACGCGGGTC
ATCTGATTGTGGTGAACAGTTTGTTGGCGGCCGGTGCAGATGTTGAGATT
CAAGATCGTTGCGGCTACACGGCGCTGAACAATTCCCCTGGAGAAGGACA
CGTTGGAATTCTCAAAGCCATCCTCAGGCCCGGAGTGGACGCCAATGCTG
CTAACGAAGATGGACGTCCTGCACTGCACGTTGCTGCTGAAGATGGACAA
GCGGATGCCATCGACGTGTTGATCGAGGCAGGAGCGGACATAGAGCTGAA
GGATGTTGGTGCATGGACGCCTCTGTGTCTTGACGCAACTAGTTGCCGGT
GCATAGCCGTGCGCGCCCGCTTGCGCCATGTAGCGAACGCTCACGCACGG
AACAACGATGGAAACACGCCATTGCACCTAGCCTGCCGTACACAGCAAGA
AGCCCTGGACACGACCGTGGACCTTCTGTTGCGATCTTGGGCGGACGAGC
CAACCGCAAACAACAACGGGAAGGTCCCAGCGCGAATGCTGGAATCGCCA
CGGCCTTGGCCCAGTTGCTCCCCAAAATATCTCGAACAGGAACGGCTGCT
TCTGGGCCGCGCTGCGAACGACAGGGCGTGGCGTCGCCGATGCTGGCTTG
TGATGCTTCGCTCTCGCACTTTTCGGGCAAGGACAGCTGGGTGTGACAAT
CGTGGCGTTACCGGGTATGAATCAATTGGCGCTGATGCCCAAGGAGAAGG
TGGACATCCAGGATGCGGAGGAGCGAGAACACGACTGGGGATAAGAGTGG
CGTGGTTGCGCAGGCCGGCAACGGGTGTGCGGTTGGTTTCGGTGGCGAGG
ACGGAGGCTTGA
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