mRNA_C-linearis_contig9.16548.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16548.1
Unique NamemRNA_C-linearis_contig9.16548.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: D7FQY4_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY4_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.620e-77
Identity = 121/156 (77.56%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:    1 MEMDDGSMSMDMGMNSFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSK-GPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAMRGCH 465
            MEMDD   SM+M   SFSFTCDVGEL+FGWWT+NTC AFYLSC+PVILLSVARHW F IATSTA SSK G ASR TALL+ N FE SSGR    ++RW RFVWT++ST GAALSLLSMLVVMTYNSGLF+A+L+GEAIGF VWGNHSLPEAMRGCH
Sbjct:    1 MEMDDDMSSMNM---SFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAIATSTATSSKRGSASRNTALLDGNGFENSSGRPP--INRWTRFVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFGVWGNHSLPEAMRGCH 151
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A8H2ZHV1_9SACH (Copper transport protein n=1 Tax=Kazachstania barnettii TaxID=61262 RepID=A0A8H2ZHV1_9SACH)

HSP 1 Score: 59.7 bits (143), Expect = 3.100e-8
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 
Query:   13 DGSMSMDMGMN-SFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLSVARHWV----FHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNH--SLPEAMRG--CH 465
            + S SM+M    S+  TC    ++F WW I T   F +SCL V+ L+    ++       A+ T AS++                T++G  ++ ++R  +F  TI        S + MLV MTYN  L +A+++G A+G++ W +   SLP   R   CH
Sbjct:   22 ESSCSMNMLFTWSYKDTC----VVFNWWHIRTRLQFIISCLIVVGLATYYEYLKFRFVKYASETTASNRVST-------------TTNGSGVSQIARREKFYRTIHYGIQVGFSFMLMLVFMTYNGWLMLAVVVGAALGYYRWNDSLVSLPMEQRSLACH 164
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A1D1YNN7_9ARAE (Copper transport protein n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YNN7_9ARAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.960e-8
Identity = 47/168 (27.98%), Postives = 74/168 (44.05%), Query Frame = 1 
Query:   16 GSMSMDMGMNSFSFTCDVGEL----------IFGWWTINTCTAFYLSCLPVILLSVARHWV------FHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAMRG--CH 465
            G    D G      TC +  L          IF WW++N+     LSCL VI L+ +  ++      +     T++ S+    R T     N  E +S   +  ++     V T I TA   LS   ML+ MTYN  L I+++IG A+G++V+   ++    +   CH
Sbjct:   19 GEHGGDHGSEDHGNTCSMNMLFNWDTERLCIIFSWWSVNSIGFLILSCLVVIFLAASFEFLKLVLRKYDSKIYTSSHSQLQEGRDT-----NPEEVASQNNVIRITYTQHLVRTFIHTAQVFLSFFLMLIFMTYNGFLMISVIIGAAVGYFVFAKQTIESGGKSLACH 181
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A015L4R1_RHIIW (Copper transport protein n=8 Tax=Rhizophagus TaxID=1129544 RepID=A0A015L4R1_RHIIW)

HSP 1 Score: 58.5 bits (140), Expect = 9.320e-8
Identity = 45/154 (29.22%), Postives = 72/154 (46.75%), Query Frame = 1 
Query:   16 GSMSMDMGMNSFSFTCDVGEL--IFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAMRG--CH 465
            GS   D       F  D  +L  IF WW +N+     LSC  +ILL+ +  ++           +   S+     + NS E ++    N ++   + V T+I T+   LS   MLV MTYN  L I+++IG AIG++V+ +  +    +   CH
Sbjct:   17 GSHDSDACNMQMLFNWDTEKLCIIFTWWRVNSIGFLILSCFIIILLATSFEFLRFALRKYDTKIQVSYSQLQEGRDANSEEVATQSNANRITYVQQLVRTLIHTSQVFLSFFLMLVFMTYNGFLMISVIIGAAIGYFVFSSSVIDFGGKSITCH 170
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: UPI001C14271D (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C14271D)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-6
Identity = 37/119 (31.09%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:   76 LIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGN 432
            +IF WW +N+     LSC  +ILL+ +  ++           +   S+     + NS E ++    N ++   + V T+I T+   LS   MLV MTYN  L I+++IG AIG++V+ +
Sbjct:   47 IIFTWWRVNSIGFLILSCFIIILLATSFEFLRFALRKYDTKIQVSYSQLQEGRDANSEEVATQSNANRITYVQQLVRTLIHTSQVFLSFFLMLVFMTYNGFLMISVIIGAAIGYFVFSS 165
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A835YT31_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT31_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.780e-6
Identity = 46/162 (28.40%), Postives = 76/162 (46.91%), Query Frame = 1 
Query:   34 MGMNSFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLSVARHWVFHI--------ATSTAASSKGPASRTTALLEPNSFETSS----GRQLNLVSRWHRFVWTIIS--TAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEA----MRGCH 465
            M M   S T    ++++ +W + T   + LSCL ++ L V  H++  +            AA  +      +AL++  S   ++      +     R  R    +++  TAG AL+LL MLV MT+NSGLF+A+L G A G W+  +  +  A    +  CH
Sbjct:   15 MAMTFSSLTDYKVKILWDFWNVTTRWQYALSCLTIVALCVLYHYIRSVEMRYTQELVAGRAAQVQAQQQDLSALMDEGSGVLAAPLLRAAKAGAPPRLRRLRLRLVAAGTAGYALALLLMLVAMTFNSGLFVALLAGWAAGQWLCFDAGVAAAGAARVEHCH 176
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A0D7B9D7_9AGAR (Copper transport protein (Fragment) n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B9D7_9AGAR)

HSP 1 Score: 54.3 bits (129), Expect = 3.190e-6
Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:   76 LIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIA-------TSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAM---RGCH 465
            ++F  W I++ T F LS + ++L+ VA  ++ HI         +TAA+S+   S +   L  N   T +G     V ++HR V  ++  +   +S   MLV MTYN+ L +A++IG AIG++++    +  A      CH
Sbjct:   29 IVFSSWHIHSSTQFALSFIIIVLMGVAYEYIRHIQRRYDAHIVATAATSRVSRSPSRESLLDN--PTVNGIP---VPQYHRAVRALLYGSAVFVSFFLMLVFMTYNAYLIVAVVIGAAIGYYLFNPELILAASDKGMACH 163
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A176VM04_MARPO (Copper transport protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VM04_MARPO)

HSP 1 Score: 53.1 bits (126), Expect = 8.190e-6
Identity = 37/134 (27.61%), Postives = 63/134 (47.01%), Query Frame = 1 
Query:   67 VGELIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIIST----AGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAMR 456
            +  L+F  W   T   +YLS + +++ ++   W+F    S A+   GP +     LE N+        L  +      VW II        A+   L ML+VM++N G+FIA+++G  IGF ++      + +R
Sbjct:   11 IATLLFDEWVTRTPLQYYLSLVAIVIFAIIHEWLFMFRVSIASKQNGPRAGG---LENNA------PLLEKLPAPKSGVWDIIVALLYGVNASTGYLLMLLVMSFNGGVFIAVVVGLVIGFALFSTSHSRQTLR 135
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A1X7R593_9SACH (Copper transport protein n=1 Tax=Kazachstania saulgeensis TaxID=1789683 RepID=A0A1X7R593_9SACH)

HSP 1 Score: 53.1 bits (126), Expect = 8.700e-6
Identity = 43/156 (27.56%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:   13 DGSMSMDMGMN-SFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNH--SLPEAMRG--CH 465
            + S SM+M    S+  TC    ++F WW I T   F +SCL  I+ S+A ++ +        +S+   S   ++       T++   ++ ++R  +   T         S + ML+ MTYN  L +A++IG A G++ W +   +LP   R   CH
Sbjct:   22 ESSCSMNMSFTWSYKDTC----VVFNWWHIKTKFQFVISCL--IVASLATYYEYLRFKFVKYASETTGSNRVSI-------TTNNNSISQIARREKLCRTFHYGIQVGFSFMLMLIFMTYNGWLMLAVVIGAAFGYYRWNDSLVALPMEQRSLACH 164
[Close]
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Match: A0A8J5QNJ0_9ASCO (Copper transport protein n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5QNJ0_9ASCO)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-5
Identity = 47/158 (29.75%), Postives = 69/158 (43.67%), Query Frame = 1 
Query:    7 MDDGSMSMDMGMN-SFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLSVARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQ--LNLVSRWHRFVWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEAMR--GCH 465
            MDD   SM+M     +  TC    ++F WW I T   F LS   V+LL +   +V       A  +       + +++P        R+  L     W+ F+               MLV MTYN  L IA+ +G AIG ++WG+ S  E++R   CH
Sbjct:   16 MDDDMCSMNMIFTWDWKNTC----VVFRWWHIKTYFGFVLSMFAVVLLGMGYEYV------RAFFANWEREHASTVVQPGQDRRFKLRRGILYGFQVWYSFML--------------MLVFMTYNGWLMIAVAVGAAIGNYIWGSSSQQESVRIMACH 149
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FQY4_ECTSI1.620e-7777.56Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A8H2ZHV1_9SACH3.100e-830.00Copper transport protein n=1 Tax=Kazachstania barn... [more]
A0A1D1YNN7_9ARAE7.960e-827.98Copper transport protein n=1 Tax=Anthurium amnicol... [more]
A0A015L4R1_RHIIW9.320e-829.22Copper transport protein n=8 Tax=Rhizophagus TaxID... [more]
UPI001C14271D1.830e-631.09Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
A0A835YT31_9STRA2.780e-628.40Copper transport protein n=1 Tax=Tribonema minus T... [more]
A0A0D7B9D7_9AGAR3.190e-630.71Copper transport protein (Fragment) n=1 Tax=Cylind... [more]
A0A176VM04_MARPO8.190e-627.61Copper transport protein n=1 Tax=Marchantia polymo... [more]
A0A1X7R593_9SACH8.700e-627.56Copper transport protein n=1 Tax=Kazachstania saul... [more]
A0A8J5QNJ0_9ASCO1.330e-529.75Copper transport protein n=1 Tax=[Candida] subhash... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1282221..1288091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhigh affinity copper transporter
Ec32 orthologEc-09_003290.1
Exons5
Model size468
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16548.1prot_C-linearis_contig9.16548.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1282221..1288091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930730.8789604-CDS-C-linearis_contig9:1282220..12823301622930730.8789604-CDS-C-linearis_contig9:1282220..1282330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1282221..1282330 +
1690881219.9247954-CDS-C-linearis_contig9:1282220..12823301690881219.9247954-CDS-C-linearis_contig9:1282220..1282330Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1282221..1282330 +
1622930730.916438-CDS-C-linearis_contig9:1286623..12867851622930730.916438-CDS-C-linearis_contig9:1286623..1286785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1286624..1286785 +
1690881219.9381604-CDS-C-linearis_contig9:1286623..12867851690881219.9381604-CDS-C-linearis_contig9:1286623..1286785Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1286624..1286785 +
1622930730.9348724-CDS-C-linearis_contig9:1287434..12875191622930730.9348724-CDS-C-linearis_contig9:1287434..1287519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1287435..1287519 +
1690881219.9551666-CDS-C-linearis_contig9:1287434..12875191690881219.9551666-CDS-C-linearis_contig9:1287434..1287519Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1287435..1287519 +
1622930730.9530966-CDS-C-linearis_contig9:1287724..12877701622930730.9530966-CDS-C-linearis_contig9:1287724..1287770Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1287725..1287770 +
1690881219.9675517-CDS-C-linearis_contig9:1287724..12877701690881219.9675517-CDS-C-linearis_contig9:1287724..1287770Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1287725..1287770 +
1622930730.971954-CDS-C-linearis_contig9:1288026..12880911622930730.971954-CDS-C-linearis_contig9:1288026..1288091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1288027..1288091 +
1690881219.9768622-CDS-C-linearis_contig9:1288026..12880911690881219.9768622-CDS-C-linearis_contig9:1288026..1288091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1288027..1288091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16548.1

>prot_C-linearis_contig9.16548.1 ID=prot_C-linearis_contig9.16548.1|Name=mRNA_C-linearis_contig9.16548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MEMDDGSMSMDMGMNSFSFTCDVGELIFGWWTINTCTAFYLSCLPVILLS
VARHWVFHIATSTAASSKGPASRTTALLEPNSFETSSGRQLNLVSRWHRF
VWTIISTAGAALSLLSMLVVMTYNSGLFIAILIGEAIGFWVWGNHSLPEA
MRGCH*
back to top

mRNA from alignment at C-linearis_contig9:1282221..1288091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16548.1 ID=mRNA_C-linearis_contig9.16548.1|Name=mRNA_C-linearis_contig9.16548.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5871bp|location=Sequence derived from alignment at C-linearis_contig9:1282221..1288091+ (Chordaria linearis ClinC8C monoicous)
ATGGAGATGGATGACGGCTCCATGAGCATGGACATGGGTATGAATAGCTT
CAGCTTCACTTGTGACGTTGGCGAGCTGATATTCGGGTGGTGGACAATCA
ACACGTGCACGTAAGAGAGATGAGTGCCATCTTTTGTTTTGCATATGACC
TCGCACAGCAGGCACAGCAGTGTTATATAGCAACCTACGATCAGGTTGGA
ACCCCTGGTCCTCAATTCGGACGCCAGTGAGAAGCTTGTCATGCATCATC
TAGAGCGTTACAAAGCCGCAGACTGTTGATACGTTTAATTTCCTCCGGCC
CGCAAGTGGGGATGGTTAAGAAGTTCACACAAGTAGACCTAGGCGCTTTT
TTTGGAAGCAGGCTCGTGAAAGTAGCAGTAGCGTGATGACTCCGCAGTGC
GAGAGGCGAGACGATTTTAGGGCGTCCTGTAGTCCTGATCTGCAGTTCCG
ATGTCGCGTGCGCCAGCTGTTCCTACCTCTATCGTCGCCGAGCTCTGGGC
GATTGCGATGCACACCAGCGCGAACGACAAGAGAGCTGCAATATATGCTC
CGCTCGCGTCAACCGGTTCGGCGCGGCTAGTTGTTTCCTATTTCAAGCAC
AACCTCTGGCCCGACACAGCAAAACTACATACTCGGAGTAGGAAGAAAAA
TTAGTTCAATACTGTAGTCTGCCTGAGGTTCTAGGTATTAGAATACGAAA
TACCCAAAGAAAATACTCCGGAGTACGTATTACGACGAGGCGACTCCGTA
GTATATCTTCCCAGAGCCTTATGCATATCGTCATCGTCTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAACTCGTTACACAGA
GTTGCTAATCCCTGAAATCTAGCGAGATCACAGCCCGTGGTCACAAAAGT
GCTATGATAGAGCCATCAGAGAATCCTAAAGAACACGCACACTTTTTGCA
GGGAAAGGGTACACAAGCCCGAAGAGGTACACCTTAAATACCTACAGCAA
GTTATGCGTGTCCAAATCTGAACTGCACGCCCGACGCAGGTACACACTTA
AGGCACCTGGGGTATCCGCGCCATCGCTGTCGTGTCTCACTACAAAACCA
GTGACGTCATCACAAAAACCCAGCACCAACATCCAGAAAAAAAAGAAATA
ATTGCCAACACATATCGTTTGTCCGTGCGCCACGGTTCCATGTCGTCCGC
ATGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAGTCCTAGCATGAC
CACACTCGACCCGCTCCGTCCGTACACGCTCTCGTCGCTGTCCTTCCCAG
CCGGTCCCTCGCTTTCTCCCATCGTCTGCCTAACCAAAAAACAAAAAATG
TTGGACTATTTTTCTTTTCTTTTTTACTTGAAAATGTATGAATTAATTAA
ATTGGCTCTGAATGTATCCAGGAAGAGCCATACCTGCATCCGTGAGCGGC
CGACTTGTAAGGGTCGTTCTTTTCGACCATATTTATGTTTTTTCACGGAT
ACCCCGGGTGCCTTAAGTGTGTACCTGCATCATGGAAGACCCCTTCAGTG
TGGAACGATTCCTTATCAGGTTCGATGTTTACAATGCTGTGCCTAACACA
GACGTTTGGGATAGACTCGGGTAGTTGTCAATTGATGTGATGGCTTTGGT
TGGCTGTTCTTTTTCACTTTGTGTCCGCGGACTGTCATTCTGACAGCACT
TCAGACAGCAGCTGCGTGCTCCATTCTTGTTTCCACGCCTACCTTGTGTT
TTTGTACAGACAGCACTTCAGACAGCAGTTACGCAGCTGTAGTCGGCAAA
TTCATTGGTAAAAAGTGGGAAGGGGGGGGGGGACGATGCTGCTGTAGTCG
AATGGAGATTGCGGGTGTGTAGTTCAGATTTGGACACACATAACTTGCTG
TAGGGATTTTTTAGGTGTGCCTCTTCGGGCTTGTGTACCCTTTCCCTGCG
TGTGCGTGTTCTTTAGGATTCTCTGATGGCTCTAACACTTTTGTGACCAC
GGGCTGTGATGTTGCTAGATTCTAAGGATTAGCAACTGTAACGAGTTTAA
TGTGAAGAAAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAGCAACAACAAACGGATTCGTGAAAAAAATCCGT
GAAAAAAAACAAATCACTTTTTTTTTTTTTTTTTTTtaTCTTTTTCCTTT
TCTTGTTTCCGCTCCCTACCCATTGTCTTGGGTTTGTGCTGCACTTCGAA
GGACGGGGATACATCGGTAGCACGGGGAATATTTCCCCGTGCCATGTCTG
CATGTCTGCGTTTTATAATTGGGGTGGAGGACTCGATTTGTCTGCCTGGC
CGGCGAGAACCCGGCACGGAATACCCTGGCAGTGCAGGGGTACTCAAGAT
AGGACCTGGTGGTGTTTTTTTTTTTTGTTTTATCCTCCCATTATTGGACT
CTGTCGTCTGCCCCTCTGGCCCCCATCCGCCACTTCTACTAGCTAGACGA
CCCAACCGGGGTCACACAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTTC
ATGCCGTGTGTATCCCCGGGGTTGGCGATTTTGATATGTCCAGTTTTATT
TTATTTTTACCTCGCATAGCGTGCAGAGGGGAGCGGAGAGCTCCAGACTA
TTTGTTTTGATTTTGTCTTGATTTGATCGCTCTGCTGACCCTTCGGGTCC
ATTTTATTCTTGTATACCTTTTTAGGGTGAGTTAACCTGTGACCACGGGA
ATTGGCCGTGTCTGTTGGATCAGTACGGACAAAGGGGGGTACTGGTGAAG
AGAGACGGGGTGGTTTTTAATGTGAAGACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CACATATAACCAGAGCTCACAGCATTTCTGCCGGATAGAAGCTCTAGCCC
GTGGTTACACAGAAGGGTTCCTCTTACTGAGGCCCCCCACCCTCCCCTCC
TGCGGTGCTTCGCCTTTGATTTTTAATGCGAGAAGAGCGCGGCAATCTCT
TCCCTCTGTGTACACACGACTAGCGCTTTCCACAAACCAGGGACATATTT
GAGAGAAAAACTCACGGTTTTTATGTTTTTTTTGTGAGAAAAGATCGCAT
TCGCCGGGATTCGAACCCGTGACCTGGAAGCTAGAAGGTGTGCGGATACC
AACTAGACCACCGGGGCGCCCGGCACTCGAATGCGAGCTGCTTTTTTTCA
GCTCGCATCGATTTACGGATTCGTGTTTTTTTTTTCTTCACGGATCCTGA
TGTGTTTTGTACGAATTTGTCAACAATTGAAGTTTTTCACGAATCTGTGA
AAAAACTTGTCGATAAGAACGGCCCTATAAACGGCAGCATTGGCGTGTAT
ACATGTGTATATGTATGTACGCTACCAACGCGGGTACGTTGGAATGCGCC
CGAAAGGGCCGAAAGGGCACTACTTTCGAATCACAGGTTGTTGGCGGTTG
TTGGTCACAGGAAGAGGTCGAAAATTGAAGTTTGGATCGACGCACGCACA
CGCTCCCAAGAACTTGAAGAACTTCATGCGCGACGTTCGATGTACTTGTA
GGGGAAAGTTACACACCCTTCTTTCTTTGATCCCATCTGCAACGTACGCG
GGTACGCTGGAAAGCGGCCGAAAGGAACTATGAGAGAGCTCGTATTAGAA
ATGATCCTATGCACGCTACCTAAATTTACGCGGGTACGTTGGAATGCGCC
CGAAAGGGGACTACTTTCGAATCACAGGTTGTTGGTGGTTGGTGGTCGCA
GGAAGAGATTGAAAGTTCAAGTTTGGATCGACGCACGCACACACGCCCAA
GAACTTGAAGAACTTCATGCGCGACGTTCGATGCAGGGGAGAGTTACACA
CCCTTATTTCTTTGATCCCATCCGCAACGTACGCGGGTACGTTGGAAAGC
GGCCGAAAGGAACTATGAGCTCGTATTAGAAATAATCCTCCGCACTCTGG
GCAGTTCACGCGAGCCGGGCTGCACTGTTTTGTCATATTTTGTTGCCTGG
ACAGGGGTTTGCTGTCTTTGTTCCATATTAGAACAGGGTTTTTCACATAA
GGATCAACGAAGTTCGCGTGTGGTGTAGGGGTCAAGATGTCATCCTCTCA
CTTGCTCTACTGGAGTTCGATTCCCGCTGTTAACCGTTTCCTTTGCCTTT
TTTCCATGCGAGCGAAGCAAAGGAGGCGCCTACACGCACCACGAGATAAT
TAACCGCGCCACCATATTTATTGTCTGCCCGAACCCCAAAAAAATAATTA
ATTTAAAAAAAATACTTGTACCCATACTTCGTATATATTTTCATCGATGA
GACAGCTAACGACTCTCAAAGAACTGCCACAACCCCCGTGAACAACCTGC
CAGGGCTTTTTACTTGAGCTGTTTGCCAGTTATACTGCTAAGTGTTGCGA
GACACTGGGTTTTCCACATTGCCACCTCTACCGCGGCTTCCTCGAAAGGG
CCTGCTTCTAGGACCACTGCTCTCCTCGAGCCGAACAGTTTCGAGACTTC
AAGTGGGCGACAACTGTGAGTAATCTCGCCGGAAAGAGTCTATACTACAA
CTGTTGTTCAGTCTCGGTGCGCTCTCGCGAGGGTCTAGCCATGCCACGAA
CTGAATTATAGACCTGCTCATGAAACTATTGTGCAAGAGGGGCAGGGTGC
TGTACGAGCAACACCTTGCCAATCAACCTGTTGTGCGCCAGTAGACTCAT
GAAAAGTTTTGACCCATCCGACAGACTTGACCGCTTCCCTCTTCATTCTG
TTTCTCCTCTCGTTGCCACTAGATTTATGTGTTTTACGGTTCGAACGCAC
GACACCGTACGTGACGTACGGTGAGTAGGCGATAAGTCACCTGAATGGAA
GCTTGCAGCGGTTGGCACTGCTGTGAGGAATATGACTGCTGCATGTTGGT
CTTTTGTACCAACCAACCAGTAGGGTTAATTAGCAGCGAGCGCTTTCTTG
AACAACACCTTGCATCAAATATAGAAAAAACGCTCTCAACGTGTGTCCTC
GCCGGCGACGCAGCACCTCGTTTCGCGCTCCAGAGCAACCGCAACCTGTG
CTTGGCGACCCGCCCCGCTCTTGAGCGGTAGACGGCGTTGTCTGGTCGTG
ATTGCTCAGTGCTGAACAACCTCACTAACAATTACACGCCTCACCCCCCT
TTTTGTTTGGACAGCAACCTTGTCAGCCGATGGCACCGCTTCGTTTGGAC
GATAATTTCAACAGCGGGCGCTGCACTCTCCCTCCTCTCGATGCTGGTGG
TGAGCGATAATTGCACGCACGCCTTGGAGAGCGGCCGAGGAAGAGGACAG
CAGTAGTACGCTTGGACTGCACCACCGTATCGTTGCTTCGTAATCAGCAC
CCGGGGTGTGTGTCTCTTGTCTGTCGTAGATGCCGTTCCATCTCTCTATT
CTCATGGGTTTTCCTTGACACTCTTTCATGTTTTGTTCCCGTGCTCTGTC
GTAGGTGATGACGTACAACAGCGGCCTATTTATCGCGATACTAATCGGAG
GTGAGAGACCTGTCTCTTCCGGTCTGGGTCTTCAGTTTATGGACGAGAGA
GTGGGGCGCAGCACTCCACCTGGGTTGTGATCTTTGTATTTGTTCACCTA
CGGGATGTTCTGCCACCTTATGTTGTGTTCGGGTTTGACGCTGCCAGTCA
CAATCTTGTTCTTGTACCATCGAATGACCACCCAATCTTGTACCGCACTT
CTGTTCTGCCCTACCCTGCGTTCGACGACGCCCACCGCATATTTGAATAT
ATCCAGAGGCGATTGGGTTCTGGGTGTGGGGCAACCACTCTCTACCAGAG
GCAATGCGCGGCTGTCACTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig9:1282221..1288091+

>mRNA_C-linearis_contig9.16548.1 ID=mRNA_C-linearis_contig9.16548.1|Name=mRNA_C-linearis_contig9.16548.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at C-linearis_contig9:1282221..1288091+ (Chordaria linearis ClinC8C monoicous)
ATGGAGATGGATGACGGCTCCATGAGCATGGACATGGGTATGAATAGCTT
CAGCTTCACTTGTGACGTTGGCGAGCTGATATTCGGGTGGTGGACAATCA
ACACGTGCACATGGAGATGGATGACGGCTCCATGAGCATGGACATGGGTA
TGAATAGCTTCAGCTTCACTTGTGACGTTGGCGAGCTGATATTCGGGTGG
TGGACAATCAACACGTGCACGGCTTTTTACTTGAGCTGTTTGCCAGTTAT
ACTGCTAAGTGTTGCGAGACACTGGGTTTTCCACATTGCCACCTCTACCG
CGGCTTCCTCGAAAGGGCCTGCTTCTAGGACCACTGCTCTCCTCGAGCCG
AACAGTTTCGAGACTTCAAGTGGGCGACAACTGGCTTTTTACTTGAGCTG
TTTGCCAGTTATACTGCTAAGTGTTGCGAGACACTGGGTTTTCCACATTG
CCACCTCTACCGCGGCTTCCTCGAAAGGGCCTGCTTCTAGGACCACTGCT
CTCCTCGAGCCGAACAGTTTCGAGACTTCAAGTGGGCGACAACTCAACCT
TGTCAGCCGATGGCACCGCTTCGTTTGGACGATAATTTCAACAGCGGGCG
CTGCACTCTCCCTCCTCTCGATGCTGGTGCAACCTTGTCAGCCGATGGCA
CCGCTTCGTTTGGACGATAATTTCAACAGCGGGCGCTGCACTCTCCCTCC
TCTCGATGCTGGTGGTGATGACGTACAACAGCGGCCTATTTATCGCGATA
CTAATCGGAGGTGATGACGTACAACAGCGGCCTATTTATCGCGATACTAA
TCGGAGAGGCGATTGGGTTCTGGGTGTGGGGCAACCACTCTCTACCAGAG
GCAATGCGCGGCTGTCACTGAAGGCGATTGGGTTCTGGGTGTGGGGCAAC
CACTCTCTACCAGAGGCAATGCGCGGCTGTCACTGA
back to top