mRNA_C-linearis_contig9.16547.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE) HSP 1 Score: 367 bits (943), Expect = 1.580e-118 Identity = 251/451 (55.65%), Postives = 286/451 (63.41%), Query Frame = 2
Query: 71 MSLQQLLAECGGRDGGT----EACIAGSDXXXXXXXXXXXXXXGNDSPPVGSTSFPPQEHEA---GDNSDHPT----------------MELGLDSSPSAQSKHGSEGVGARPLREAAEER---QAQETPVTPTKVAGGAAAPAPEASGPTPTAGRMEYTADAMAARLAVIPLEGKNVEEVAAAAVAACQEFGVEMRRFDSRKSSKEPGARMVLVGLACKHGMKNRQKEYLETEAANGIKRRKSSSQRTNCPCKFYVRWPVR-GEKSEHPHLSMTGKCTLEHNHPVQKDAVDEVRRQNKRLDTPTKEACEALTD--AGFKPAVQGKMLEALTGERHNLRAIQNAAAAHARRKTPYDANELLSKDRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFERSMNTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYGGPASRRRAQ 1336
MSL LL ECGG D G + CI XXXXXXXX G+ S +GS+ PQE++A GD+ D P LDSSP + S ++G GARPL EAAE Q +ETP PEA TPTAG EY+ADAMAARLA IPLEG+++E V AA V A EFGVEM+R DS+KSSKEPGAR+ L+GLACKH MKNRQKEY E + AN KRRKS+S+RTNC K Y+RWPV G K P LS L HNHPV K VDEVRRQ K LDTPTK+AC LT AGFKPAVQGKM++ALTGER N RAIQ DRRLLYV+M+K+ AAVSAGV+ VPP+ +RA+V TFE S+N AA ISSGQG VLGNPQAVRQPA RSQG R KSS EYGG +RRRAQ
Sbjct: 1 MSLHLLLQECGGDDDGAGSDMDVCIENDGPPAPXXXXXXXXLAGSTSSSLGSSM--PQEYQAQGAGDDPDQPVDVAFXXXXXXXXXXXXXXXXLDSSPHSPSADVADGDGARPLCEAAEAHPALQERETPXXXXXXXXXXXXXXPEA---TPTAGSPEYSADAMAARLASIPLEGQSIEGVEAAVVGAFLEFGVEMKRCDSKKSSKEPGARLRLIGLACKHAMKNRQKEYREGDGANSGKRRKSNSRRTNCAVKGYIRWPVNVGNKHPDPILSFK---ELNHNHPVNKGVVDEVRRQTKPLDTPTKDACVKLTGKYAGFKPAVQGKMIQALTGERPNARAIQ---------------------DRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGARARRRAQ 422
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5L482_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L482_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.280e-65 Identity = 148/265 (55.85%), Postives = 174/265 (65.66%), Query Frame = 2
Query: 71 MSLQQLLAECGGRDGG---TEACIAGSDXXXXXXXXXXXXXXGNDSPPVGSTSFPPQEHEAGDNSDHP--TMELGLDSSPSAQSKHGSEGVGARPLREAAEERQAQETPVTPTKVAGGAAAPAP-EASGPTPTAGRMEYTADAMAARLAVIPLEGKNVEEVAAAAVAACQEFGVEMRRFDSRKSSKEPGARMVLVGLACKHGMKNRQKEYLETEAANGIKRRKSSSQRTNCPCKFYVRWPVRGEKSEHPHLSMTGKCTLEHNHPV 847
MSL LL +CG D + CI GSD G +S P G TS PQE EA D M+ LD +AQSK S G G RPLREAAE+ ET TP + GGAA PAP EASG TPTAG Y+A+A++ARLA+IPLEG +V++VAAA V ACQEFG MRR DS+KS KE G R+V VGLACKH M NRQKEY + +AANG K+RKSSSQRTNC K YVRWPV+G +S+HP+L+ T TLEH+HPV
Sbjct: 1 MSLMDLLQDCGDDDDAGSDMDVCI-GSDPPAAVPAVFG----GTNSLPAGGTSLAPQEDEAQGAGDEARGAMDGTLDPITNAQSKTVSGGDGIRPLREAAEQG---ETSDTPQRAEGGAAGPAPPEASGRTPTAGSPAYSAEALSARLAIIPLEG-SVDDVAAAVVEACQEFGAVMRRCDSKKSKKEAGGRLVAVGLACKHAMPNRQKEYRQGDAANGAKKRKSSSQRTNCNMKVYVRWPVQGPRSDHPYLAFT---TLEHDHPV 253
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.650e-41 Identity = 123/366 (33.61%), Postives = 172/366 (46.99%), Query Frame = 2
Query: 443 TPTAGRMEYTADAMAARLAVIPLEGKNVEEVAAAAVAACQEFGVEMRRFDSRKSSKEPGARMVLVGLACKHGMKNRQKEYLETEAANGIKRRKSSSQRTNCPCKFYVRWPVRGEKSEHPHLSMTGKCTLEHNHPVQKDAVDEVRRQNKRLDTPTKEACEALTDAGFKPAVQGKMLEALTGERHNLRAIQNAAAAHARRKTPYDA---------NELLSK------------------------------------------------------DRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFERSMNTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNY 1342
+PT + Y+ADA+ L IP + K++ ++ +A C++ GV++ S S + G R+V L C HGM R+K N K R+S SQRT C CK +RWP++ + +HP L+ LEH H V K+A D + Q L TP KE LTDAG KPA Q ++EAL G R + R + A + P A +E LS+ DRR LYV+ LK+ATAAVS GV+TVPPEA+RA+V+ F++ ++ A+ I S G + NP VR P R G R+++S + G G A R Q Y
Sbjct: 71 SPTKEKWVYSADALKRDLGNIPTKEKDIPQLVSAVKDVCEQHGVKVSV--STSSKERGGGRVVATTLQCVHGMPQRKKP---ASTDNSTKSRRSDSQRTGCNCKINIRWPIKTDVHQHPRLTT---MDLEHLHTVDKEAADVQQAQKGPLTTPMKETAAKLTDAGLKPAAQAVVIEALHGRRVHPRTMSGQRGRRATTEWPEGAKPKWAVTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGGAVVGAARRTYNQTY 428
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.470e-22 Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 2
Query: 1073 DRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFERSMNTAAMISSGQGAVLGNPQAVRQPAVRSQ 1276
DRRLLYVEMLKKATAAVS+GVQ VPP+ MRA+V+TFE SMN AAMISSGQGAVLGNPQAVRQPAVRS+
Sbjct: 489 DRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 7.870e-15 Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 2
Query: 1073 DRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFERSMNTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYN 1345
DRR LYV+ LK+ATAAVS GV+TVPPEA+RA+VR F++ ++ A+ I S G + NP VR P R G R+++S E G G A R Q+Y+
Sbjct: 36 DRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.170e-12 Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 2
Query: 1073 DRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFERSMNTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYN 1345
DRR LYV+ LK+ATAAVS GV+TVPPEA+RA+VR F++ ++ A+ I S G + NP VR P R G R+++S E G G A R Q+Y+
Sbjct: 781 DRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 3.090e-12 Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 2
Query: 1073 DRRLLYVEMLKKATAAVSAGVQTVPPEAMRAVVRTFER-SMNTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSEYG---GPASRRRAQNYN 1345
DRR LYV+ LK+ATAAVS GV+TVPPEA+RA+VR F++ ++ A+ I S G + NP VR P R G R+++S E G G A R Q+Y+
Sbjct: 135 DRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16547.1 >prot_C-linearis_contig9.16547.1 ID=prot_C-linearis_contig9.16547.1|Name=mRNA_C-linearis_contig9.16547.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=427bp MSLQQLLAECGGRDGGTEACIAGSDTEVCIAGSDTEACIGNDSPPVGSTSback to top mRNA from alignment at C-linearis_contig9:1276185..1280753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16547.1 ID=mRNA_C-linearis_contig9.16547.1|Name=mRNA_C-linearis_contig9.16547.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4569bp|location=Sequence derived from alignment at C-linearis_contig9:1276185..1280753- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1276185..1280753- >mRNA_C-linearis_contig9.16547.1 ID=mRNA_C-linearis_contig9.16547.1|Name=mRNA_C-linearis_contig9.16547.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at C-linearis_contig9:1276185..1280753- (Chordaria linearis ClinC8C monoicous)back to top |