mRNA_C-linearis_contig9.16537.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16537.1
Unique NamemRNA_C-linearis_contig9.16537.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A6H5JP15_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP15_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 4.370e-78
Identity = 132/259 (50.97%), Postives = 183/259 (70.66%), Query Frame = 1
Query:   61 VPQGSLLFSAAAVI--STANPPRWQPQTIGGIFVRGG---ANAREDGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGV-DLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSREDIETAFIE 819
            V    LL +  A+   S +     +P+T G + +R       AR+DG YSFSLTT+SP G L Q+EYA+NSA  GALS A  Y GG+ +A++ +T+SPLV +  TRKIA + DG  +++SGLAAD+R+LT+KA    L Y+GK+GE+A++PV  LV++VA ++QEYTQ+GGVRPFGV  LVAG+ D     LY+++PSGS ++WK  A+GKGS  AE +LHE FE+ +DRD ALEL +S+  + S GT+ ED+ETA+IE
Sbjct:    4 VANAMLLIACTAMTAGSISRTTHARPETAGCMGMRASQIRGGARDDGRYSFSLTTYSPEGRLNQLEYAMNSALGGALSIAVIYAGGIAMATVNQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKGKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGVAFLVAGIGDDGNGLLYRLDPSGSVTSWKAAAIGKGSAEAEVILHEEFEDLVDRDHALELALSIALRCSSGTTEEDVETAYIE 262          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: D7FQX5_ECTSI (Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.120e-55
Identity = 91/171 (53.22%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  310 VASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQL-YKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSREDIETAFIE 819
            +A++ +T+SPLV +  TRKIA + DG  +++SGLAAD+R+LT+KA    L Y+ K+GE+A++PV  LV++VA ++QEYTQ+GGVRPFG   LVAG+D  G  L Y+++PSGS ++WK  A+GKGS  AE +LH+ FE+ +DRD ALEL +S+  + S GT+ ED+ETA+IE
Sbjct:    1 MATVSQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKSKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGAAFLVAGIDDDGHGLLYRLDPSGSVTSWKAAAIGKGSAEAEVILHDEFEDLVDRDHALELALSIALRCSSGTTEEDVETAYIE 171          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2F165_9CHLO (Proteasome subunit alpha type n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F165_9CHLO)

HSP 1 Score: 174 bits (441), Expect = 1.190e-49
Identity = 102/215 (47.44%), Postives = 138/215 (64.19%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLG--PQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
            YSFSLTTFSP G L QIEYA+N+   GA S       GVV+A+  KT SPLV E+  +KI ++ D    +YSG+  D RVL R+A  TA  Y   Y E   +PV  LV +VA VMQE+TQ GGVRPFGV LLVAG D LG  PQLY+V+PSG++ AWK  A+GK  + A+A L + ++ S++ D A+   +  L++   G  ++E +E A + ++
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALNAVSQGATSLGIKAKNGVVLATEKKTPSPLVDESTVQKIVNITDNIGFVYSGMGGDYRVLVRRARRTAQAYYDVYKEA--IPVSQLVREVAAVMQEFTQSGGVRPFGVSLLVAGNDGLGHGPQLYQVDPSGTYFAWKASAIGKNMVNAKAFLEKRYDASVELDDAVHTALLTLKEGFDGELTKEKVEVAVVGDD 218          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A059LMD8_9CHLO (Proteasome subunit alpha type n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMD8_9CHLO)

HSP 1 Score: 172 bits (435), Expect = 8.880e-49
Identity = 101/213 (47.42%), Postives = 133/213 (62.44%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
            YSFSLTTFSP G L QIEYA+N+A AGA S       GVV+A+  K  S LV ++  +KIA +     + YSG+  DSRVL RKA      Y  +Y E+  +PV  LV +VA VMQE+TQ GGVRPFGV LL+AG D  GPQLY+V+PSGS+ AWK  A+GK    A+  L + F E M+ D A+   +  L++   G  + ++IE   + E+
Sbjct:    6 YSFSLTTFSPNGKLVQIEYALNAASAGATSLGIKAANGVVIATEKKLPSTLVDDSTVQKIALLTPNMGMAYSGMGPDSRVLVRKARKAGQAYWQQYHEQ--IPVAQLVREVAAVMQEFTQSGGVRPFGVSLLLAGFDENGPQLYQVDPSGSYFAWKASAIGKNMTNAKTFLEKRFMEDMELDDAIHTALLTLKEGFEGELTGDNIEVGIVGED 216          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2ZX75_9RHOD (Proteasome subunit alpha type n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX75_9RHOD)

HSP 1 Score: 171 bits (434), Expect = 1.250e-48
Identity = 100/225 (44.44%), Postives = 139/225 (61.78%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIG-TSREDIETAFIEEEPYSRS**TAQIK 861
            YSFSLTTFSP G LTQIEYA+N+  AGA S     + G+VVA+  +  S L+ ET  +K+A V +   ++YSG+  DSRVL RKA   A  Y   Y E   +PV  +V ++A VMQEYTQ GGVRPFGV LLVAG D  GP LY+V+PSGS+ AWK  A+GK  + A+  L + + + ++ + A+   +  L++   G  +  +IE   + ++   R    A+IK
Sbjct:    6 YSFSLTTFSPSGKLTQIEYALNAVAAGATSLGIKASNGIVVATEKRMSSALMDETTLQKVALVTENVGMVYSGMGPDSRVLIRKARKNAQTYYQTYRES--IPVSQVVRQIASVMQEYTQSGGVRPFGVSLLVAGYDYEGPHLYQVDPSGSYFAWKASAIGKNMVNAKTFLEKRYSDDIELEDAIHTSILTLKEGFEGQVTANNIELGVVGDDKVFRVLSAAEIK 228          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: L1J0C3_GUITC (Proteasome subunit alpha type n=3 Tax=Cryptophyceae TaxID=3027 RepID=L1J0C3_GUITC)

HSP 1 Score: 168 bits (425), Expect = 2.770e-47
Identity = 95/216 (43.98%), Postives = 132/216 (61.11%), Query Frame = 1
Query:  181 DGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
            D  YSFSLTTFSP G L QIEYA+N+  AG+ S       GVVVA+  K  SPLV E+  +KIA + +   ++YSG+  DSRVL  KA   A +Y   YGE   +P   LV ++A VMQE+TQ GGVRPFGV LL+ G D  GP LY+V+PSGS+  WK  A+GK  + A+  L + + + ++ + A+   +  L++   G  S  +IE   + ++
Sbjct:    3 DSDYSFSLTTFSPSGKLVQIEYALNAVAAGSTSLGIKATNGVVVATEKKVSSPLVDESMVKKIAEIDNHIGMVYSGMGPDSRVLVAKARKIAQKYMLTYGEP--IPTNQLVREIASVMQEFTQSGGVRPFGVSLLIIGSDDKGPMLYQVDPSGSYWPWKACAIGKNMVNAKTFLEKRYNDDIELEDAIHTAILTLKEGFEGQISENNIEIGIVNDQ 216          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A0D2WKY9_CAPO3 (Proteasome subunit alpha type n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKY9_CAPO3)

HSP 1 Score: 167 bits (424), Expect = 3.910e-47
Identity = 97/216 (44.91%), Postives = 132/216 (61.11%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLL-GPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRE-DIETAFIEEEPY 831
            Y FSLTTFSP G L QIEYA+N+ Q G  S       GVV+A+  K  + L+ E+  +K++ + D    +YSG+  DSRVL RKA   A +Y   YGE   +P   LV +VA VMQEYTQ GGVRPFGV LLVAG D + GP LY+V+PSGS+ AWK  A+GK  L A   L + + E+++ + A+   +  L++   G   E +IE    +++ Y
Sbjct:    5 YGFSLTTFSPSGKLVQIEYALNAVQGGTTSVGIKAVNGVVIATEKKLPTALIDESSLQKVSSINDKVGFVYSGMGPDSRVLLRKARKIAQQYYTTYGES--MPTSQLVREVASVMQEYTQSGGVRPFGVSLLVAGYDSVKGPSLYQVDPSGSYWAWKASAIGKNMLNARTFLEKRYTETIELEDAIHTAILTLKEGFEGQMTEHNIEIGIADQKGY 218          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A388K5M7_CHABU (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5M7_CHABU)

HSP 1 Score: 167 bits (424), Expect = 3.910e-47
Identity = 95/201 (47.26%), Postives = 126/201 (62.69%), Query Frame = 1
Query:  181 DGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIG 783
            D  YSFSLTTFSP G L QIE+A+N+  AGA S     + GVV+A+  K  S LV E   RKI+ +     V+YSG+  DSRVL  K+   A +Y   Y E   +P+  LV ++A VMQE+TQ GGVRPFGV LLVAG D  GPQLY+V+PSGS+ AWK  A+GK +  A+  L + + E M+ + A+   +  L++   G
Sbjct:    3 DSQYSFSLTTFSPSGQLVQIEHALNAVAAGATSLGIKASNGVVIATEKKLPSILVDEQSVRKISVLSKNIGVVYSGMGPDSRVLVSKSRKQAQQYFRLYEEP--IPIAQLVREIAAVMQEFTQSGGVRPFGVSLLVAGYDSSGPQLYQVDPSGSYFAWKASAIGKNTANAKTFLEKRYTEDMELEDAVHTAILTLKEGFEG 201          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A1Y1V3E0_9FUNG (Proteasome subunit alpha type n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V3E0_9FUNG)

HSP 1 Score: 167 bits (424), Expect = 5.380e-47
Identity = 92/203 (45.32%), Postives = 127/203 (62.56%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRED 798
            YSFSLTTFSP G L QIEYA+N+ + G  S       GVV+A+  K+ S LV ET   KI+ + +   ++YSG+  D+RVL  KA   A +Y+  Y E    PV  LV  VA++MQEYTQ GGVRPFGV LL+AG D  GP LY+V+PSGS+  WK  A+GK  ++A+  L + + ES++ + A+   +  L++   G   E+
Sbjct:    5 YSFSLTTFSPSGKLVQIEYALNAVKQGVTSIGIKATNGVVIATEKKSPSTLVDETTVEKISLITNDIGIVYSGMGPDARVLVGKARKAAQKYKRIYNENP--PVNMLVKDVALIMQEYTQSGGVRPFGVSLLIAGYDSNGPSLYQVDPSGSYWPWKATAIGKNMISAKTFLEKRYTESLELEDAVHTAILTLKEGYEGQMTEN 205          
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2NN63_9EUKA (Proteasome subunit alpha type n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NN63_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 5.510e-47
Identity = 94/210 (44.76%), Postives = 131/210 (62.38%), Query Frame = 1
Query:  190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRE-DIETAFI 816
            YSFSLTTFSP G L QIEYA+N+  AGA S       G+V+A+  K +S L+ E+  +KI  + +   V+YSG+  DSRVL R+    A  Y   Y +   +PV  LV ++A +MQE+TQ GGVRPFGV LLVAG D LGP LY+V+PSGS+ AWK  A+GK  + A+  L + + E ++ + A+   +  L++   G   E +IE A +
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALNAVAAGATSLGIKATNGIVIATEKKLQSSLIDESTVQKIQLLTNNIGVVYSGMGPDSRVLVRRGRKVAQTYFRTYADH--IPVSQLVREIATIMQEFTQSGGVRPFGVSLLVAGYDDLGPHLYQVDPSGSYWAWKASAIGKHMVNAKTFLEKRYNEGIELEDAIHTAILTLKEGFEGEMNEHNIEVAVV 213          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP15_9PHAE4.370e-7850.97Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
D7FQX5_ECTSI1.120e-5553.22Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus... [more]
A0A7S2F165_9CHLO1.190e-4947.44Proteasome subunit alpha type n=2 Tax=Pycnococcus ... [more]
A0A059LMD8_9CHLO8.880e-4947.42Proteasome subunit alpha type n=1 Tax=Helicosporid... [more]
A0A7S2ZX75_9RHOD1.250e-4844.44Proteasome subunit alpha type n=3 Tax=Rhodosorus m... [more]
L1J0C3_GUITC2.770e-4743.98Proteasome subunit alpha type n=3 Tax=Cryptophycea... [more]
A0A0D2WKY9_CAPO33.910e-4744.91Proteasome subunit alpha type n=1 Tax=Capsaspora o... [more]
A0A388K5M7_CHABU3.910e-4747.26PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A1Y1V3E0_9FUNG5.380e-4745.32Proteasome subunit alpha type n=3 Tax=Neocallimast... [more]
A0A7S2NN63_9EUKA5.510e-4744.76Proteasome subunit alpha type n=1 Tax=Cyanoptyche ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1194418..1197470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue5.9e-45
Seed eggNOG ortholog2880.D7FQX5
KEGG koko:K02726
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsKOG0181@1,KOG0181@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons3
Model size951
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16537.1prot_C-linearis_contig9.16537.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1194526..1197425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.4430568-UTR-C-linearis_contig9:1194417..11945251622930728.4430568-UTR-C-linearis_contig9:1194417..1194525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1194418..1194525 -
1690881218.6852982-UTR-C-linearis_contig9:1194417..11945251690881218.6852982-UTR-C-linearis_contig9:1194417..1194525Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1194418..1194525 -
1622930728.5659764-UTR-C-linearis_contig9:1197425..11974701622930728.5659764-UTR-C-linearis_contig9:1197425..1197470Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1197426..1197470 -
1690881218.7296937-UTR-C-linearis_contig9:1197425..11974701690881218.7296937-UTR-C-linearis_contig9:1197425..1197470Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1197426..1197470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.478693-CDS-C-linearis_contig9:1194525..11951041622930728.478693-CDS-C-linearis_contig9:1194525..1195104Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1194526..1195104 -
1690881218.698797-CDS-C-linearis_contig9:1194525..11951041690881218.698797-CDS-C-linearis_contig9:1194525..1195104Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1194526..1195104 -
1622930728.5000913-CDS-C-linearis_contig9:1195295..11954891622930728.5000913-CDS-C-linearis_contig9:1195295..1195489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1195296..1195489 -
1690881218.7108579-CDS-C-linearis_contig9:1195295..11954891690881218.7108579-CDS-C-linearis_contig9:1195295..1195489Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1195296..1195489 -
1622930728.543163-CDS-C-linearis_contig9:1197400..11974251622930728.543163-CDS-C-linearis_contig9:1197400..1197425Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1197401..1197425 -
1690881218.7211802-CDS-C-linearis_contig9:1197400..11974251690881218.7211802-CDS-C-linearis_contig9:1197400..1197425Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1197401..1197425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16537.1

>prot_C-linearis_contig9.16537.1 ID=prot_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp
MRLASVPQGSLLFSAAAVISTANPPRWQPQTIGGIFVRGGANAREDGPYS
FSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLV
RETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVV
PVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSF
SAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRE
DIETAFIEEEPYSRS*
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mRNA from alignment at C-linearis_contig9:1194418..1197470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16537.1 ID=mRNA_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at C-linearis_contig9:1194418..1197470- (Chordaria linearis ClinC8C monoicous)
TCTGTCTCCACAGCTGTTTCACCAACGCTCAACGATCTCGCACAGATGAG GCTAGCAAGCGTACCGCAGGGTGAGCTTGATCCCTAGAACCGTTTTATGA GCGTTTGCTTGATTTTACCTGTGCACATGATGAGGGAGAAAGAAAAAATG TCCTCCTGGGTGCACGAAGTACTGCTGTAGAGTCTCGTTACACTCCATCC TTCATCAACCGGTGGTTTACTGACTCTGATAGACTAGGAGGGCTACGCTG AATACTTTAGTGCAGGGGATTAGCCCTCCTAATGTATCAAAATATTTCTG ATGCATGACGAGTCAGGCACCAGCGTGTGCTGCGCAAATCAAATTCTAGG GCAAAGCGGGTAGACTAACACTATAGATACTGGTATGTAGCAGGCCATAT TGTGGCAGTTGGTTGTAGCTCCCCGAGGTGCAATGCACACCCCGCGTGGC TACCAGGTTACATAGCAGTTGCAAGAAAACTGGGTGCCATAAAAGCACTC CATGCTTGACCGTGTGGTGGTTGAGGCCCGCCGCTCTCCGCTCGCAGAGG TTTGAATTCAAATCATTCACATCACGAGTGCAATGTGCCGGCCATGCCAG TGGTCTCTCTACGCAGCACCGCCACGTTCTCGTAGTTGCTCGCGTCCCTC TAGCTGTGCGTTGGGCACTACTGCTCTAGTCTGGAGCGAGTTACACGCAT AAATTCCTCGCTGTATCGATCTCATTGCTATGCGACGACTGGAAGTTGGT AGACTTTCTCCTCCGTTTATCCTGCATCCCTACTTTGTCCTCGCGACAAC GGCGCTGCTTGTCGGTCAAAAAAATGTGTGGTAGTACAGTATTGTACACT CTATACACGAGGGGGATCATGTAGACACGCAGAAATGTTTTTTGGAGGCC ACCAAATTCGATGTGGGGTGTGTGTGTATACGTGCACTTGCAAAGCAGCA GAAAACACCCACCTCTCTGTTTTTCTCCGAACTTCCAACCCGTGAGTCCA GGCATTCGTAGTTTCTTACAAGTCAAGAGCCTACTTGTTCATGAAAAGAA GTAGAGAGATGCAACACTGCGGTACCTGGGGGTGCGGGGCATGTGTACCC AAGGAAGCATATACTTAGGTTTGCGTGTCTAGCTATTTCTCAGTAGCACG AGAGAAAACCGCTTCAAAATGAGACTTATGGGCCCCTTGTTGGCCCCATT CCGCGATCAACTATCGCGGCAACGAAATTCGAAGTGTCGCTCTGCACGTA TATTGGCCCAGTCACAAACAGTTGGGTCAAGTTCAGATTGATTTGACAGA GCTGGCACGCAGCGCCGCTGAGTCGCCGCTGAGTCAACAGAATCTCATCT TCGGCTTTGCTGGGCTTTGCTGAGTTCCGGGCCTCAAAAAACAACTTTCA AGTCCGCGAGAGAGAACCGTCCAGGAGTGGTCTTCCAGGGTATGCGTCGG CTCCCACACTTTACCAGTAGAGGCCTCCAAGCGTACGCTGTTCTTGCTTA TCAGGGACTAGCTCGCTGATCGAGGAGGTGCGGCAGTTGAACCTGGAGAG GAATGCAAGCTTTTATGGATCAGCCCCGATGCGGGTACCAAAATCTCTGC TGAGAGCCACACCAGGACACCGGCATATCCTCGTTTTCAGCTCGCGCGGT AACCCGGCGGGTCAATTTTCGCGTTTCCAACATTGTGCAGATTTGAAATA GAGCCGCCAATTTTTGCTCCGAGCCCCGTTTTTTAACCTGTCCTCGGAAC TCCTCTTTCGCGGGAGGGCCCTTCTTCTGTTGTGTTTTTTTAGTTCGTGT GCGTTAAAAATGTAAGCATCGCGCACGCTTCGGAGCTGGTTCTTTGTGAT CCTGTCGAAACATTAACCTTTCTCGAAAACCGCCGCCGCTTTCGGGGCCG CCCACACGCGTCACGCCGTCCCCCTCCATCGTTTGCTTGTTTGTTCTTAC TGCTGTGTCCCGCACGACTATTCACCCACAGGTTCATTGCTCTTTTCCGC GGCGGCGGTGATCTCGACGGCAAATCCACCCAGATGGCAACCACAAACGA TCGGAGGCATTTTTGTCAGAGGGGGGGCAAATGCGAGGGAGGACGGGCCG TACTCTTTCTCCCTGACCACCTTCAGTCCTCGTGGATCCCTGACCCAAAT CGAGTATGCGATCAACTCAGCTCAGGTGAGAGCTATGAAACGACCGAGTC TGTCCCAACTCTGTAGTCATTAAATTATGGGCAGTAACTTCGGGAAAGTT ACAGGGGAGCTAGGAAGGGTTTTGCTGGTACCGCCGTGCTTGGCTTTATC TCGTGTGCAGAACCGTCCAACTACATATTTTCCGCCTCCTTGCTTGAAAC CGCCCCCATTTTGAAGGCGGGAGCCCTGTCGGCAGCAGCTTGTTATAATG GAGGTGTCGTAGTGGCCTCCATCTGCAAGACAGAGTCGCCGCTTGTGAGG GAGACGGGGACAAGAAAAATTGCCCATGTCAGGGACGGGTGTTGTGTACT GTACTCTGGGCTGGCAGCAGATTCAAGGGTTTTGACAAGAAAAGCCATGG ATACCGCGTTGGAATACCGAGGAAAGTATGGCGAACGGGCCGTAGTACCC GTTGTCACCCTAGTTTCAAAAGTGGCTATGGTCATGCAAGAGTACACTCA GTTGGGAGGAGTCCGTCCTTTCGGTGTAGTCCTCTTAGTGGCGGGTGTCG ACCTGCTCGGCCCTCAACTGTACAAAGTGGAGCCTTCTGGGAGTTTCTCG GCTTGGAAATGCCTCGCGGTAGGCAAAGGCAGTTTGGCCGCAGAAGCGAT GCTGCACGAGGGTTTTGAGGAGTCGATGGACAGAGATCGTGCGCTGGAAC TCGTTGTATCAGTGCTGCAGAAAAGCTCCATCGGCACCAGCAGAGAAGAC ATCGAGACGGCGTTCATTGAAGAGGAGCCCTACAGTAGAAGTTGATAGAC AGCCCAAATTAAGCATTTGTGATACGACTCTGGACATCAAGTCTTTCCAT TTCTGCAGATGGCAACACTGCAGGCATCACCAGCAGCTTCCAAAATCGCC GGA
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Coding sequence (CDS) from alignment at C-linearis_contig9:1194418..1197470-

>mRNA_C-linearis_contig9.16537.1 ID=mRNA_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at C-linearis_contig9:1194418..1197470- (Chordaria linearis ClinC8C monoicous)
ATGAGGCTAGCAAGCGTACCGCAGGATGAGGCTAGCAAGCGTACCGCAGG
GTTCATTGCTCTTTTCCGCGGCGGCGGTGATCTCGACGGCAAATCCACCC
AGATGGCAACCACAAACGATCGGAGGCATTTTTGTCAGAGGGGGGGCAAA
TGCGAGGGAGGACGGGCCGTACTCTTTCTCCCTGACCACCTTCAGTCCTC
GTGGATCCCTGACCCAAATCGAGTATGCGATCAACTCAGCTCAGGTTCAT
TGCTCTTTTCCGCGGCGGCGGTGATCTCGACGGCAAATCCACCCAGATGG
CAACCACAAACGATCGGAGGCATTTTTGTCAGAGGGGGGGCAAATGCGAG
GGAGGACGGGCCGTACTCTTTCTCCCTGACCACCTTCAGTCCTCGTGGAT
CCCTGACCCAAATCGAGTATGCGATCAACTCAGCTCAGGCGGGAGCCCTG
TCGGCAGCAGCTTGTTATAATGGAGGTGTCGTAGTGGCCTCCATCTGCAA
GACAGAGTCGCCGCTTGTGAGGGAGACGGGGACAAGAAAAATTGCCCATG
TCAGGGACGGGTGTTGTGTACTGTACTCTGGGCTGGCAGCAGATTCAAGG
GTTTTGACAAGAAAAGCCATGGATACCGCGTTGGAATACCGAGGAAAGTA
TGGCGAACGGGCCGTAGTACCCGTTGTCACCCTAGTTTCAAAAGTGGCTA
TGGTCATGCAAGAGTACACTCAGTTGGGAGGAGTCCGTCCTTTCGGTGTA
GTCCTCTTAGTGGCGGGTGTCGACCTGCTCGGCCCTCAACTGTACAAAGT
GGAGCCTTCTGGGAGTTTCTCGGCTTGGAAATGCCTCGCGGTAGGCAAAG
GCAGTTTGGCCGCAGAAGCGATGCTGCACGAGGGTTTTGAGGAGTCGATG
GACAGAGATCGTGCGCTGGAACTCGTTGTATCAGTGCTGCAGAAAAGCTC
CATCGGCACCAGCAGAGAAGACATCGAGACGGCGTTCATTGAAGAGGAGC
CCTACAGTAGAAGTTGAGCGGGAGCCCTGTCGGCAGCAGCTTGTTATAAT
GGAGGTGTCGTAGTGGCCTCCATCTGCAAGACAGAGTCGCCGCTTGTGAG
GGAGACGGGGACAAGAAAAATTGCCCATGTCAGGGACGGGTGTTGTGTAC
TGTACTCTGGGCTGGCAGCAGATTCAAGGGTTTTGACAAGAAAAGCCATG
GATACCGCGTTGGAATACCGAGGAAAGTATGGCGAACGGGCCGTAGTACC
CGTTGTCACCCTAGTTTCAAAAGTGGCTATGGTCATGCAAGAGTACACTC
AGTTGGGAGGAGTCCGTCCTTTCGGTGTAGTCCTCTTAGTGGCGGGTGTC
GACCTGCTCGGCCCTCAACTGTACAAAGTGGAGCCTTCTGGGAGTTTCTC
GGCTTGGAAATGCCTCGCGGTAGGCAAAGGCAGTTTGGCCGCAGAAGCGA
TGCTGCACGAGGGTTTTGAGGAGTCGATGGACAGAGATCGTGCGCTGGAA
CTCGTTGTATCAGTGCTGCAGAAAAGCTCCATCGGCACCAGCAGAGAAGA
CATCGAGACGGCGTTCATTGAAGAGGAGCCCTACAGTAGAAGTTGA
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