mRNA_C-linearis_contig9.16537.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A6H5JP15_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP15_9PHAE) HSP 1 Score: 248 bits (633), Expect = 4.370e-78 Identity = 132/259 (50.97%), Postives = 183/259 (70.66%), Query Frame = 1
Query: 61 VPQGSLLFSAAAVI--STANPPRWQPQTIGGIFVRGG---ANAREDGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGV-DLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSREDIETAFIE 819
V LL + A+ S + +P+T G + +R AR+DG YSFSLTT+SP G L Q+EYA+NSA GALS A Y GG+ +A++ +T+SPLV + TRKIA + DG +++SGLAAD+R+LT+KA L Y+GK+GE+A++PV LV++VA ++QEYTQ+GGVRPFGV LVAG+ D LY+++PSGS ++WK A+GKGS AE +LHE FE+ +DRD ALEL +S+ + S GT+ ED+ETA+IE
Sbjct: 4 VANAMLLIACTAMTAGSISRTTHARPETAGCMGMRASQIRGGARDDGRYSFSLTTYSPEGRLNQLEYAMNSALGGALSIAVIYAGGIAMATVNQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKGKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGVAFLVAGIGDDGNGLLYRLDPSGSVTSWKAAAIGKGSAEAEVILHEEFEDLVDRDHALELALSIALRCSSGTTEEDVETAYIE 262
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: D7FQX5_ECTSI (Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX5_ECTSI) HSP 1 Score: 187 bits (476), Expect = 1.120e-55 Identity = 91/171 (53.22%), Postives = 131/171 (76.61%), Query Frame = 1
Query: 310 VASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQL-YKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSREDIETAFIE 819
+A++ +T+SPLV + TRKIA + DG +++SGLAAD+R+LT+KA L Y+ K+GE+A++PV LV++VA ++QEYTQ+GGVRPFG LVAG+D G L Y+++PSGS ++WK A+GKGS AE +LH+ FE+ +DRD ALEL +S+ + S GT+ ED+ETA+IE
Sbjct: 1 MATVSQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKSKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGAAFLVAGIDDDGHGLLYRLDPSGSVTSWKAAAIGKGSAEAEVILHDEFEDLVDRDHALELALSIALRCSSGTTEEDVETAYIE 171
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2F165_9CHLO (Proteasome subunit alpha type n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F165_9CHLO) HSP 1 Score: 174 bits (441), Expect = 1.190e-49 Identity = 102/215 (47.44%), Postives = 138/215 (64.19%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLG--PQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
YSFSLTTFSP G L QIEYA+N+ GA S GVV+A+ KT SPLV E+ +KI ++ D +YSG+ D RVL R+A TA Y Y E +PV LV +VA VMQE+TQ GGVRPFGV LLVAG D LG PQLY+V+PSG++ AWK A+GK + A+A L + ++ S++ D A+ + L++ G ++E +E A + ++
Sbjct: 6 YSFSLTTFSPSGKLVQIEYALNAVSQGATSLGIKAKNGVVLATEKKTPSPLVDESTVQKIVNITDNIGFVYSGMGGDYRVLVRRARRTAQAYYDVYKEA--IPVSQLVREVAAVMQEFTQSGGVRPFGVSLLVAGNDGLGHGPQLYQVDPSGTYFAWKASAIGKNMVNAKAFLEKRYDASVELDDAVHTALLTLKEGFDGELTKEKVEVAVVGDD 218
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A059LMD8_9CHLO (Proteasome subunit alpha type n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMD8_9CHLO) HSP 1 Score: 172 bits (435), Expect = 8.880e-49 Identity = 101/213 (47.42%), Postives = 133/213 (62.44%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
YSFSLTTFSP G L QIEYA+N+A AGA S GVV+A+ K S LV ++ +KIA + + YSG+ DSRVL RKA Y +Y E+ +PV LV +VA VMQE+TQ GGVRPFGV LL+AG D GPQLY+V+PSGS+ AWK A+GK A+ L + F E M+ D A+ + L++ G + ++IE + E+
Sbjct: 6 YSFSLTTFSPNGKLVQIEYALNAASAGATSLGIKAANGVVIATEKKLPSTLVDDSTVQKIALLTPNMGMAYSGMGPDSRVLVRKARKAGQAYWQQYHEQ--IPVAQLVREVAAVMQEFTQSGGVRPFGVSLLLAGFDENGPQLYQVDPSGSYFAWKASAIGKNMTNAKTFLEKRFMEDMELDDAIHTALLTLKEGFEGELTGDNIEVGIVGED 216
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2ZX75_9RHOD (Proteasome subunit alpha type n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX75_9RHOD) HSP 1 Score: 171 bits (434), Expect = 1.250e-48 Identity = 100/225 (44.44%), Postives = 139/225 (61.78%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIG-TSREDIETAFIEEEPYSRS**TAQIK 861
YSFSLTTFSP G LTQIEYA+N+ AGA S + G+VVA+ + S L+ ET +K+A V + ++YSG+ DSRVL RKA A Y Y E +PV +V ++A VMQEYTQ GGVRPFGV LLVAG D GP LY+V+PSGS+ AWK A+GK + A+ L + + + ++ + A+ + L++ G + +IE + ++ R A+IK
Sbjct: 6 YSFSLTTFSPSGKLTQIEYALNAVAAGATSLGIKASNGIVVATEKRMSSALMDETTLQKVALVTENVGMVYSGMGPDSRVLIRKARKNAQTYYQTYRES--IPVSQVVRQIASVMQEYTQSGGVRPFGVSLLVAGYDYEGPHLYQVDPSGSYFAWKASAIGKNMVNAKTFLEKRYSDDIELEDAIHTSILTLKEGFEGQVTANNIELGVVGDDKVFRVLSAAEIK 228
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: L1J0C3_GUITC (Proteasome subunit alpha type n=3 Tax=Cryptophyceae TaxID=3027 RepID=L1J0C3_GUITC) HSP 1 Score: 168 bits (425), Expect = 2.770e-47 Identity = 95/216 (43.98%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 181 DGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGT-SREDIETAFIEEE 825
D YSFSLTTFSP G L QIEYA+N+ AG+ S GVVVA+ K SPLV E+ +KIA + + ++YSG+ DSRVL KA A +Y YGE +P LV ++A VMQE+TQ GGVRPFGV LL+ G D GP LY+V+PSGS+ WK A+GK + A+ L + + + ++ + A+ + L++ G S +IE + ++
Sbjct: 3 DSDYSFSLTTFSPSGKLVQIEYALNAVAAGSTSLGIKATNGVVVATEKKVSSPLVDESMVKKIAEIDNHIGMVYSGMGPDSRVLVAKARKIAQKYMLTYGEP--IPTNQLVREIASVMQEFTQSGGVRPFGVSLLIIGSDDKGPMLYQVDPSGSYWPWKACAIGKNMVNAKTFLEKRYNDDIELEDAIHTAILTLKEGFEGQISENNIEIGIVNDQ 216
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A0D2WKY9_CAPO3 (Proteasome subunit alpha type n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKY9_CAPO3) HSP 1 Score: 167 bits (424), Expect = 3.910e-47 Identity = 97/216 (44.91%), Postives = 132/216 (61.11%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLL-GPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRE-DIETAFIEEEPY 831
Y FSLTTFSP G L QIEYA+N+ Q G S GVV+A+ K + L+ E+ +K++ + D +YSG+ DSRVL RKA A +Y YGE +P LV +VA VMQEYTQ GGVRPFGV LLVAG D + GP LY+V+PSGS+ AWK A+GK L A L + + E+++ + A+ + L++ G E +IE +++ Y
Sbjct: 5 YGFSLTTFSPSGKLVQIEYALNAVQGGTTSVGIKAVNGVVIATEKKLPTALIDESSLQKVSSINDKVGFVYSGMGPDSRVLLRKARKIAQQYYTTYGES--MPTSQLVREVASVMQEYTQSGGVRPFGVSLLVAGYDSVKGPSLYQVDPSGSYWAWKASAIGKNMLNARTFLEKRYTETIELEDAIHTAILTLKEGFEGQMTEHNIEIGIADQKGY 218
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A388K5M7_CHABU (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5M7_CHABU) HSP 1 Score: 167 bits (424), Expect = 3.910e-47 Identity = 95/201 (47.26%), Postives = 126/201 (62.69%), Query Frame = 1
Query: 181 DGPYSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIG 783
D YSFSLTTFSP G L QIE+A+N+ AGA S + GVV+A+ K S LV E RKI+ + V+YSG+ DSRVL K+ A +Y Y E +P+ LV ++A VMQE+TQ GGVRPFGV LLVAG D GPQLY+V+PSGS+ AWK A+GK + A+ L + + E M+ + A+ + L++ G
Sbjct: 3 DSQYSFSLTTFSPSGQLVQIEHALNAVAAGATSLGIKASNGVVIATEKKLPSILVDEQSVRKISVLSKNIGVVYSGMGPDSRVLVSKSRKQAQQYFRLYEEP--IPIAQLVREIAAVMQEFTQSGGVRPFGVSLLVAGYDSSGPQLYQVDPSGSYFAWKASAIGKNTANAKTFLEKRYTEDMELEDAVHTAILTLKEGFEG 201
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A1Y1V3E0_9FUNG (Proteasome subunit alpha type n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V3E0_9FUNG) HSP 1 Score: 167 bits (424), Expect = 5.380e-47 Identity = 92/203 (45.32%), Postives = 127/203 (62.56%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRED 798
YSFSLTTFSP G L QIEYA+N+ + G S GVV+A+ K+ S LV ET KI+ + + ++YSG+ D+RVL KA A +Y+ Y E PV LV VA++MQEYTQ GGVRPFGV LL+AG D GP LY+V+PSGS+ WK A+GK ++A+ L + + ES++ + A+ + L++ G E+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALNAVKQGVTSIGIKATNGVVIATEKKSPSTLVDETTVEKISLITNDIGIVYSGMGPDARVLVGKARKAAQKYKRIYNENP--PVNMLVKDVALIMQEYTQSGGVRPFGVSLLIAGYDSNGPSLYQVDPSGSYWPWKATAIGKNMISAKTFLEKRYTESLELEDAVHTAILTLKEGYEGQMTEN 205
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Match: A0A7S2NN63_9EUKA (Proteasome subunit alpha type n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NN63_9EUKA) HSP 1 Score: 167 bits (423), Expect = 5.510e-47 Identity = 94/210 (44.76%), Postives = 131/210 (62.38%), Query Frame = 1
Query: 190 YSFSLTTFSPRGSLTQIEYAINSAQAGALSAAACYNGGVVVASICKTESPLVRETGTRKIAHVRDGCCVLYSGLAADSRVLTRKAMDTALEYRGKYGERAVVPVVTLVSKVAMVMQEYTQLGGVRPFGVVLLVAGVDLLGPQLYKVEPSGSFSAWKCLAVGKGSLAAEAMLHEGFEESMDRDRALELVVSVLQKSSIGTSRE-DIETAFI 816
YSFSLTTFSP G L QIEYA+N+ AGA S G+V+A+ K +S L+ E+ +KI + + V+YSG+ DSRVL R+ A Y Y + +PV LV ++A +MQE+TQ GGVRPFGV LLVAG D LGP LY+V+PSGS+ AWK A+GK + A+ L + + E ++ + A+ + L++ G E +IE A +
Sbjct: 6 YSFSLTTFSPSGKLVQIEYALNAVAAGATSLGIKATNGIVIATEKKLQSSLIDESTVQKIQLLTNNIGVVYSGMGPDSRVLVRRGRKVAQTYFRTYADH--IPVSQLVREIATIMQEFTQSGGVRPFGVSLLVAGYDDLGPHLYQVDPSGSYWAWKASAIGKHMVNAKTFLEKRYNEGIELEDAIHTAILTLKEGFEGEMNEHNIEVAVV 213 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16537.1 >prot_C-linearis_contig9.16537.1 ID=prot_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp MRLASVPQGSLLFSAAAVISTANPPRWQPQTIGGIFVRGGANAREDGPYSback to top mRNA from alignment at C-linearis_contig9:1194418..1197470- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16537.1 ID=mRNA_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3053bp|location=Sequence derived from alignment at C-linearis_contig9:1194418..1197470- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1194418..1197470- >mRNA_C-linearis_contig9.16537.1 ID=mRNA_C-linearis_contig9.16537.1|Name=mRNA_C-linearis_contig9.16537.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at C-linearis_contig9:1194418..1197470- (Chordaria linearis ClinC8C monoicous)back to top |