mRNA_C-linearis_contig9.16526.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: D7FR53_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR53_ECTSI) HSP 1 Score: 353 bits (906), Expect = 3.300e-114 Identity = 208/270 (77.04%), Postives = 230/270 (85.19%), Query Frame = 1
Query: 355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKERXXXXXXXXL-KEKPGARSASACCGDVSSRVGETDNA-GKTGQSFVP 1158
FEAPLEPLQVLTW+LLLLI+GGFY+ IVPAL +WAIVA +VYGVLAS+TVLAG+LAC KDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNY++FV LL+STF MT IQLG+S WFA++YH+DN FSDRVE +Y +L TGHIVLVY FAV+VLPFLGLLAQLLGFHIMLIS++LTTYDYIVQEQRKER L K+K GAR ACC VS G D A K+GQ+ VP
Sbjct: 6 FEAPLEPLQVLTWVLLLLIVGGFYSFIVPALARVWAIVAGLVYGVLASSTVLAGILACLKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYRYFVTLLVSTFFMTSIQLGISAWFAIMYHSDNAAFSDRVEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKSGARHPLACC--VSGERGGVDAAPAKSGQALVP 273
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A835YWP3_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP3_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.470e-54 Identity = 124/223 (55.61%), Postives = 159/223 (71.30%), Query Frame = 1
Query: 364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHT--DNGTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
PLEPLQV TW LLL++I FYAI+VP L AI +YGV A + G +AC DP+D NV H G A S ++TFCFLCQ+HVNKGSRHCRY XXXXXXXXXXXXXXX +NY++FV LL+ST +T +QL LS W VL+HT + R++++Y L G+I++VY+FAV+VLPF+GLL QL+GFH+ML + LTTYDYI++EQ++ER
Sbjct: 2 PLEPLQVFTWSLLLVMIVEFYAIVVPGLERGPAIGLGCLYGVFAVGCTIMGFMACKVDPMDHNVGA-HAG--AGSSTQERTFCFLCQVHVNKGSRHCRYCDKXXXXXXXXXXXXXXXIGGTNYRYFVMLLVSTLGLTGLQLALSIWLIVLFHTQSEGDPLYQRIDDRYGSLSSDGYIIIVYVFAVMVLPFVGLLIQLIGFHMMLAREGLTTYDYIIREQKRER 221
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S2UYM7_9STRA (Palmitoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYM7_9STRA) HSP 1 Score: 169 bits (427), Expect = 3.640e-43 Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1
Query: 355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQ-LDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
F+ PLEPLQV+TW LL+L+IGGFY II+P L L+ I+ I++G + AG +AC DPIDPNV+ +G + G +DK FC LC++HVNK S+H XXXXXXXXXXXXXXXXXX +NY++F+ LL+ TF T ++LGL Y D F D V + Y D +VL +FA ++P LL QL FH MLI +DLTTYDYI++EQR+ER
Sbjct: 13 FQRPLEPLQVVTWGLLILMIGGFYGIIIPPLEELYQIICGIIFGASTVGAIWAGFMACITDPIDPNVQEALKGNHSPGPHSDKLFCALCRVHVNKSSKHXXXXXXXXXXXXXXXXXXXXXIGAANYRYFIILLVFTFIFTLLELGLFARHISAYFVDKDGFQDSVRDAYGGGSDPMVVLVLCLVFAAALVPVALLLGQLFFFHGMLIHEDLTTYDYIMREQRRER 237
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3YC54_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC54_HETAK) HSP 1 Score: 133 bits (335), Expect = 9.710e-31 Identity = 96/223 (43.05%), Postives = 131/223 (58.74%), Query Frame = 1
Query: 358 EAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQY-TQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKE 1023
EAP EPLQ+ TW LL +I GFY +I+P L + + I++ +L V+A LACW DP D NV G D +C C HVN+ S+H XXXXXXXXXXXXXXXXXX + NY+ F+ LL++TF+ T ++L + +Y D + +VE+ Y G ++ +IF V + P GLL QL FHI L+ + LTTYDYI++EQ +E
Sbjct: 13 EAPFEPLQIATWFLLATMIAGFYGVIIPPLSIVLQALLGIIFAILVVIAVVAAFLACWIDPSDDNVLGLATVGVNNGGT-DNIYCRFCATHVNRSSKHXXXXXXXXXXXXXXXXXXXXXIGKKNYRHFLVLLVATFAFTLLELAMFIHNVAVYFQDKDDYKTQVEDAYGASASPLGPLIASWIFIVALTPVAGLLGQLFFFHITLLREGLTTYDYIIREQTRE 234
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7R9U7W5_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W5_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.880e-26 Identity = 74/225 (32.89%), Postives = 119/225 (52.89%), Query Frame = 1
Query: 358 EAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRF-HQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQ-LDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
+ P LQ+ TWLLL +++ GF+ I++P L + A V++ VY VL V G C +P+DP + RF GE G + TFC L Q++V+K SRHCR+ NY++F + + + + + L L+G+ +Y TD DR+E+ + + +V +++V++L L+ QL FH+ LI L+TY+YI+ EQR+ER
Sbjct: 12 QPPYSVLQISTWLLLPVLMSGFFVILLPTLSVVEAAVSTAVYSVLLCIAVFCGYKTCAINPVDPGLERFLSTGERPPGGV-NTTFCALDQINVHKDSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRWFFSTVTAVVAFVLVHLALNGYVIAIYITDREDLEDRIEDGFDSGFPVDAFLAIVIVYSVLLLTVGLLMLQLWTFHLYLIYLGLSTYEYIISEQRRER 235
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A6U4ETW1_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ETW1_9STRA) HSP 1 Score: 104 bits (260), Expect = 9.900e-21 Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAV----IVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRK 1020
P LQV TW+LL +++GGFY ++VPAL L + Y + + + A C +P+DP + +F +A+ TFC L Q++V K SRHCR+ NY+FF + + + G++ + LY TD +RVE + HI + + F V ++L L+ QL FHI LI L+TY+YI+ EQR+
Sbjct: 14 PYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A6U4EWZ3_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EWZ3_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.420e-20 Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAV----IVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRK 1020
P LQV TW+LL +++GGFY ++VPAL L + Y + + + A C +P+DP + +F +A+ TFC L Q++V K SRHCR+ NY+FF + + + G++ + LY TD +RVE + HI + + F V ++L L+ QL FHI LI L+TY+YI+ EQR+
Sbjct: 14 PYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3K685_9STRA (Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K685_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.540e-19 Identity = 93/252 (36.90%), Postives = 135/252 (53.57%), Query Frame = 1
Query: 355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNV---RRFHQGETAAGS------------------AADKT-----FCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDN---GTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKE 1023
F+ P PLQVLTW + LI+ G+Y I++P L N ++Y +LA T L+ + DP DP V +R Q A+GS A D++ C+LC+ V S+HCR XXXXXXXXXXXXXXXXXX + NY +F+ ++ T+ +QL L+ + + + F +N + I+ + +A I+LP +GL+ QL FH+ML+ + LTTY+YI+ EQRKE
Sbjct: 6 FDRPFHPLQVLTWFVFPLILFGYYGILMPLLENELLYSTGLIYSMLALFTFLSAWITSAIDPRDPRVDEAQRRQQQIMASGSCLSRCCEPLAMGPAFEYVAVDESDTETIVCYLCEARVESSSKHCRXXXXXXXXXXXXXXXXXXXIGQRNYAYFLCVICCTWLFATLQLALTVYVLIRLTVPSLRASLFVRNAQNHWCLPTMQAVIIALGAWAGILLPLVGLVGQLGAFHLMLLGEGLTTYEYIINEQRKE 257
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3ZJ70_9STRA (Palmitoyltransferase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ70_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.390e-15 Identity = 94/266 (35.34%), Postives = 132/266 (49.62%), Query Frame = 1
Query: 355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPN---LWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAA-------------DKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDN---GTFSDRVENQYTQLDRTGHIVLVYI--FAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKERXXXXXXXXLKEKPGARSASAC 1089
F+ PL PLQ LTW L +++ FY +++P LP WA+ VY A+ T + DP DP+V T + D C+LCQ+HV S+HCR XXXXXXXXXXXXXXXXXX NY +F+A++ ST T +QL LS + V + + R +R VL + +A +++P + L+ QL FH ML+ + LTTY+YI+ EQR + E+P A + C
Sbjct: 6 FDYPLHPLQCLTWALFPVVLLDFYWLLLPLLPGEATRWAV--GTVYTAAAATTFFCAWITAAVDPRDPSVAAAAPPATNRLARCCEPLALWPPPVGEDTCRCYLCQVHVFASSKHCRXXXXXXXXXXXXXXXXXXXVGAKNYGYFLAVIASTCVFTTMQLALSVYVVVELAVPDRRRSAVAARARRHAVGRERGVDAVLALVCAYAALLVPLVVLIGQLALFHAMLVRRGLTTYEYILGEQR-----------VDERPSAPPRTIC 258
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A482T4P4_9ARCH (DHHC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4P4_9ARCH) HSP 1 Score: 85.1 bits (209), Expect = 6.470e-14 Identity = 90/230 (39.13%), Postives = 133/230 (57.83%), Query Frame = 1
Query: 355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWA-IVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQY-TQLDRTGHIVLVY-IFAVIVLPFLGLLA---QLLGFHIMLISQDLTTYDYIVQEQRKER 1026
FE P +PLQ++TW + LI+ ++A + L +L + IV +I+YG+ A A ++ L C DP D + + ++A ++ +C+ C+++V+ S+H XXXXXXXXXXXXXXXXXX NYKFF+A++ S +T L LS V F DRV+ T L +V V I V V FL L+A QL FH+MLI + ++TY++IV EQ++ R
Sbjct: 18 FERPWDPLQLVTWAMFPLILTHYFAFLNFLLWDLASKIVITILYGIFAIALAISVHLTCSTDPADDALCQVKTVKSAVDD--EEVYCYFCEINVHHTSKHXXXXXXXXXXXXXXXXXXXXXVGGKNYKFFLAVISSALLLTGTNLALSTALMVYSFAYVQHFHDRVDGVLRTFLGSPLSVVAVQAILVVSVAVFLALVAMIVQLFSFHMMLIYRKMSTYEFIVSEQKRLR 245 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16526.1 >prot_C-linearis_contig9.16526.1 ID=prot_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=285bp MSTLQSTDAPRSCRCRFEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLback to top mRNA from alignment at C-linearis_contig9:1104296..1108127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16526.1 ID=mRNA_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3832bp|location=Sequence derived from alignment at C-linearis_contig9:1104296..1108127+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1104296..1108127+ >mRNA_C-linearis_contig9.16526.1 ID=mRNA_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at C-linearis_contig9:1104296..1108127+ (Chordaria linearis ClinC8C monoicous)back to top |