mRNA_C-linearis_contig9.16526.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16526.1
Unique NamemRNA_C-linearis_contig9.16526.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: D7FR53_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR53_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 3.300e-114
Identity = 208/270 (77.04%), Postives = 230/270 (85.19%), Query Frame = 1
Query:  355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKERXXXXXXXXL-KEKPGARSASACCGDVSSRVGETDNA-GKTGQSFVP 1158
            FEAPLEPLQVLTW+LLLLI+GGFY+ IVPAL  +WAIVA +VYGVLAS+TVLAG+LAC KDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNY++FV LL+STF MT IQLG+S WFA++YH+DN  FSDRVE +Y +L  TGHIVLVY FAV+VLPFLGLLAQLLGFHIMLIS++LTTYDYIVQEQRKER        L K+K GAR   ACC  VS   G  D A  K+GQ+ VP
Sbjct:    6 FEAPLEPLQVLTWVLLLLIVGGFYSFIVPALARVWAIVAGLVYGVLASSTVLAGILACLKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYRYFVTLLVSTFFMTSIQLGISAWFAIMYHSDNAAFSDRVEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDKDKSGARHPLACC--VSGERGGVDAAPAKSGQALVP 273          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A835YWP3_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP3_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.470e-54
Identity = 124/223 (55.61%), Postives = 159/223 (71.30%), Query Frame = 1
Query:  364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHT--DNGTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
            PLEPLQV TW LLL++I  FYAI+VP L    AI    +YGV A    + G +AC  DP+D NV   H G  A  S  ++TFCFLCQ+HVNKGSRHCRY   XXXXXXXXXXXXXXX   +NY++FV LL+ST  +T +QL LS W  VL+HT  +      R++++Y  L   G+I++VY+FAV+VLPF+GLL QL+GFH+ML  + LTTYDYI++EQ++ER
Sbjct:    2 PLEPLQVFTWSLLLVMIVEFYAIVVPGLERGPAIGLGCLYGVFAVGCTIMGFMACKVDPMDHNVGA-HAG--AGSSTQERTFCFLCQVHVNKGSRHCRYCDKXXXXXXXXXXXXXXXIGGTNYRYFVMLLVSTLGLTGLQLALSIWLIVLFHTQSEGDPLYQRIDDRYGSLSSDGYIIIVYVFAVMVLPFVGLLIQLIGFHMMLAREGLTTYDYIIREQKRER 221          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S2UYM7_9STRA (Palmitoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYM7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.640e-43
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1
Query:  355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQ-LDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
            F+ PLEPLQV+TW LL+L+IGGFY II+P L  L+ I+  I++G      + AG +AC  DPIDPNV+   +G  + G  +DK FC LC++HVNK S+H   XXXXXXXXXXXXXXXXXX   +NY++F+ LL+ TF  T ++LGL       Y  D   F D V + Y    D    +VL  +FA  ++P   LL QL  FH MLI +DLTTYDYI++EQR+ER
Sbjct:   13 FQRPLEPLQVVTWGLLILMIGGFYGIIIPPLEELYQIICGIIFGASTVGAIWAGFMACITDPIDPNVQEALKGNHSPGPHSDKLFCALCRVHVNKSSKHXXXXXXXXXXXXXXXXXXXXXIGAANYRYFIILLVFTFIFTLLELGLFARHISAYFVDKDGFQDSVRDAYGGGSDPMVVLVLCLVFAAALVPVALLLGQLFFFHGMLIHEDLTTYDYIMREQRRER 237          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3YC54_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC54_HETAK)

HSP 1 Score: 133 bits (335), Expect = 9.710e-31
Identity = 96/223 (43.05%), Postives = 131/223 (58.74%), Query Frame = 1
Query:  358 EAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQY-TQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKE 1023
            EAP EPLQ+ TW LL  +I GFY +I+P L  +   +  I++ +L    V+A  LACW DP D NV          G   D  +C  C  HVN+ S+H   XXXXXXXXXXXXXXXXXX  + NY+ F+ LL++TF+ T ++L +      +Y  D   +  +VE+ Y       G ++  +IF V + P  GLL QL  FHI L+ + LTTYDYI++EQ +E
Sbjct:   13 EAPFEPLQIATWFLLATMIAGFYGVIIPPLSIVLQALLGIIFAILVVIAVVAAFLACWIDPSDDNVLGLATVGVNNGGT-DNIYCRFCATHVNRSSKHXXXXXXXXXXXXXXXXXXXXXIGKKNYRHFLVLLVATFAFTLLELAMFIHNVAVYFQDKDDYKTQVEDAYGASASPLGPLIASWIFIVALTPVAGLLGQLFFFHITLLREGLTTYDYIIREQTRE 234          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7R9U7W5_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.880e-26
Identity = 74/225 (32.89%), Postives = 119/225 (52.89%), Query Frame = 1
Query:  358 EAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRF-HQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQ-LDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKER 1026
            + P   LQ+ TWLLL +++ GF+ I++P L  + A V++ VY VL    V  G   C  +P+DP + RF   GE   G   + TFC L Q++V+K SRHCR+                      NY++F + + +  +   + L L+G+   +Y TD     DR+E+ +         + +V +++V++L    L+ QL  FH+ LI   L+TY+YI+ EQR+ER
Sbjct:   12 QPPYSVLQISTWLLLPVLMSGFFVILLPTLSVVEAAVSTAVYSVLLCIAVFCGYKTCAINPVDPGLERFLSTGERPPGGV-NTTFCALDQINVHKDSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRWFFSTVTAVVAFVLVHLALNGYVIAIYITDREDLEDRIEDGFDSGFPVDAFLAIVIVYSVLLLTVGLLMLQLWTFHLYLIYLGLSTYEYIISEQRRER 235          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A6U4ETW1_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ETW1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.900e-21
Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAV----IVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRK 1020
            P   LQV TW+LL +++GGFY ++VPAL  L   +    Y +  +  + A    C  +P+DP + +F         +A+ TFC L Q++V K SRHCR+                      NY+FF   + +      +  G++ +   LY TD     +RVE  +       HI + + F V    ++L    L+ QL  FHI LI   L+TY+YI+ EQR+
Sbjct:   14 PYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A6U4EWZ3_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EWZ3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.420e-20
Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query:  364 PLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIFAV----IVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRK 1020
            P   LQV TW+LL +++GGFY ++VPAL  L   +    Y +  +  + A    C  +P+DP + +F         +A+ TFC L Q++V K SRHCR+                      NY+FF   + +      +  G++ +   LY TD     +RVE  +       HI + + F V    ++L    L+ QL  FHI LI   L+TY+YI+ EQR+
Sbjct:   14 PYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3K685_9STRA (Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K685_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.540e-19
Identity = 93/252 (36.90%), Postives = 135/252 (53.57%), Query Frame = 1
Query:  355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWAIVASIVYGVLASATVLAGVLACWKDPIDPNV---RRFHQGETAAGS------------------AADKT-----FCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDN---GTFSDRVENQYTQLDRTGHIVLVYIFAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKE 1023
            F+ P  PLQVLTW +  LI+ G+Y I++P L N       ++Y +LA  T L+  +    DP DP V   +R  Q   A+GS                  A D++      C+LC+  V   S+HCR XXXXXXXXXXXXXXXXXX  + NY +F+ ++  T+    +QL L+ +  +     +     F    +N +        I+ +  +A I+LP +GL+ QL  FH+ML+ + LTTY+YI+ EQRKE
Sbjct:    6 FDRPFHPLQVLTWFVFPLILFGYYGILMPLLENELLYSTGLIYSMLALFTFLSAWITSAIDPRDPRVDEAQRRQQQIMASGSCLSRCCEPLAMGPAFEYVAVDESDTETIVCYLCEARVESSSKHCRXXXXXXXXXXXXXXXXXXXIGQRNYAYFLCVICCTWLFATLQLALTVYVLIRLTVPSLRASLFVRNAQNHWCLPTMQAVIIALGAWAGILLPLVGLVGQLGAFHLMLLGEGLTTYEYIINEQRKE 257          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A7S3ZJ70_9STRA (Palmitoyltransferase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ70_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.390e-15
Identity = 94/266 (35.34%), Postives = 132/266 (49.62%), Query Frame = 1
Query:  355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPN---LWAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAA-------------DKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDN---GTFSDRVENQYTQLDRTGHIVLVYI--FAVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKERXXXXXXXXLKEKPGARSASAC 1089
            F+ PL PLQ LTW L  +++  FY +++P LP     WA+    VY   A+ T     +    DP DP+V       T   +               D   C+LCQ+HV   S+HCR XXXXXXXXXXXXXXXXXX    NY +F+A++ ST   T +QL LS +  V     +      + R        +R    VL  +  +A +++P + L+ QL  FH ML+ + LTTY+YI+ EQR           + E+P A   + C
Sbjct:    6 FDYPLHPLQCLTWALFPVVLLDFYWLLLPLLPGEATRWAV--GTVYTAAAATTFFCAWITAAVDPRDPSVAAAAPPATNRLARCCEPLALWPPPVGEDTCRCYLCQVHVFASSKHCRXXXXXXXXXXXXXXXXXXXVGAKNYGYFLAVIASTCVFTTMQLALSVYVVVELAVPDRRRSAVAARARRHAVGRERGVDAVLALVCAYAALLVPLVVLIGQLALFHAMLVRRGLTTYEYILGEQR-----------VDERPSAPPRTIC 258          
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Match: A0A482T4P4_9ARCH (DHHC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4P4_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 6.470e-14
Identity = 90/230 (39.13%), Postives = 133/230 (57.83%), Query Frame = 1
Query:  355 FEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNLWA-IVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYKFFVALLLSTFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQY-TQLDRTGHIVLVY-IFAVIVLPFLGLLA---QLLGFHIMLISQDLTTYDYIVQEQRKER 1026
            FE P +PLQ++TW +  LI+  ++A +   L +L + IV +I+YG+ A A  ++  L C  DP D  + +    ++A     ++ +C+ C+++V+  S+H   XXXXXXXXXXXXXXXXXX    NYKFF+A++ S   +T   L LS    V        F DRV+    T L     +V V  I  V V  FL L+A   QL  FH+MLI + ++TY++IV EQ++ R
Sbjct:   18 FERPWDPLQLVTWAMFPLILTHYFAFLNFLLWDLASKIVITILYGIFAIALAISVHLTCSTDPADDALCQVKTVKSAVDD--EEVYCYFCEINVHHTSKHXXXXXXXXXXXXXXXXXXXXXVGGKNYKFFLAVISSALLLTGTNLALSTALMVYSFAYVQHFHDRVDGVLRTFLGSPLSVVAVQAILVVSVAVFLALVAMIVQLFSFHMMLIYRKMSTYEFIVSEQKRLR 245          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR53_ECTSI3.300e-11477.04Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YWP3_9STRA2.470e-5455.61Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UYM7_9STRA3.640e-4350.67Palmitoyltransferase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YC54_HETAK9.710e-3143.05Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U7W5_9STRA3.880e-2632.89Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4ETW1_9STRA9.900e-2131.39Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U4EWZ3_9STRA1.420e-2031.39Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3K685_9STRA1.540e-1936.90Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZJ70_9STRA1.390e-1535.34Palmitoyltransferase n=3 Tax=Pelagomonas calceolat... [more]
A0A482T4P4_9ARCH6.470e-1439.13DHHC domain-containing protein n=1 Tax=archaeon Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1104296..1108127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue3e-95
Seed eggNOG ortholog2880.D7FR53
KEGG koko:K07964,ko:K16675,ko:K20027
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko04391,ko05205,map00531,map01100,map04391,map05205
KEGG ModuleM00078
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-09_003460.1
EC2.3.1.225,3.2.1.166
COG Functional cat.Z
CAZyGH79
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko04131
Exons6
Model size2060
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16526.1prot_C-linearis_contig9.16526.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 1104602..1107228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930726.172993-UTR-C-linearis_contig9:1104295..11046011622930726.172993-UTR-C-linearis_contig9:1104295..1104601Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1104296..1104601 +
1690881217.6734254-UTR-C-linearis_contig9:1104295..11046011690881217.6734254-UTR-C-linearis_contig9:1104295..1104601Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1104296..1104601 +
1622930726.2957516-UTR-C-linearis_contig9:1107228..11081271622930726.2957516-UTR-C-linearis_contig9:1107228..1108127Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1107229..1108127 +
1690881217.750136-UTR-C-linearis_contig9:1107228..11081271690881217.750136-UTR-C-linearis_contig9:1107228..1108127Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 1107229..1108127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930726.1906805-CDS-C-linearis_contig9:1104601..11048651622930726.1906805-CDS-C-linearis_contig9:1104601..1104865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1104602..1104865 +
1690881217.6854093-CDS-C-linearis_contig9:1104601..11048651690881217.6854093-CDS-C-linearis_contig9:1104601..1104865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1104602..1104865 +
1622930726.202066-CDS-C-linearis_contig9:1105096..11052271622930726.202066-CDS-C-linearis_contig9:1105096..1105227Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1105097..1105227 +
1690881217.6960514-CDS-C-linearis_contig9:1105096..11052271690881217.6960514-CDS-C-linearis_contig9:1105096..1105227Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1105097..1105227 +
1622930726.2192216-CDS-C-linearis_contig9:1105889..11060351622930726.2192216-CDS-C-linearis_contig9:1105889..1106035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1105890..1106035 +
1690881217.7056072-CDS-C-linearis_contig9:1105889..11060351690881217.7056072-CDS-C-linearis_contig9:1105889..1106035Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1105890..1106035 +
1622930726.2355368-CDS-C-linearis_contig9:1106357..11064801622930726.2355368-CDS-C-linearis_contig9:1106357..1106480Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1106358..1106480 +
1690881217.716182-CDS-C-linearis_contig9:1106357..11064801690881217.716182-CDS-C-linearis_contig9:1106357..1106480Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1106358..1106480 +
1622930726.2560215-CDS-C-linearis_contig9:1106794..11068801622930726.2560215-CDS-C-linearis_contig9:1106794..1106880Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1106795..1106880 +
1690881217.7288017-CDS-C-linearis_contig9:1106794..11068801690881217.7288017-CDS-C-linearis_contig9:1106794..1106880Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1106795..1106880 +
1622930726.2776966-CDS-C-linearis_contig9:1107123..11072281622930726.2776966-CDS-C-linearis_contig9:1107123..1107228Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1107124..1107228 +
1690881217.7388637-CDS-C-linearis_contig9:1107123..11072281690881217.7388637-CDS-C-linearis_contig9:1107123..1107228Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 1107124..1107228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16526.1

>prot_C-linearis_contig9.16526.1 ID=prot_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=285bp
MSTLQSTDAPRSCRCRFEAPLEPLQVLTWLLLLLIIGGFYAIIVPALPNL
WAIVASIVYGVLASATVLAGVLACWKDPIDPNVRRFHQGETAAGSAADKT
FCFLCQLHVNKGSRHCRYCDKCVDRFDHHCKWLNNCIGRSNYKFFVALLL
STFSMTFIQLGLSGWFAVLYHTDNGTFSDRVENQYTQLDRTGHIVLVYIF
AVIVLPFLGLLAQLLGFHIMLISQDLTTYDYIVQEQRKERERKERRRKLK
EKPGARSASACCGDVSSRVGETDNAGKTGQSFVP*
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mRNA from alignment at C-linearis_contig9:1104296..1108127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16526.1 ID=mRNA_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3832bp|location=Sequence derived from alignment at C-linearis_contig9:1104296..1108127+ (Chordaria linearis ClinC8C monoicous)
AAGCAAAGACCGCGGCGGTGCTCGTGGGGTGGAGTGCAGGAGAGCCATGC GAAAAAATGGGTGAGGGTAGTATGTAGATCGTGTCTAAGTGACACCTGCC GAAAACGAGCAGAGGCGCGACAAAATCCGTCCTAGAGGGAGGAGCAGTGA GAGGTGTATGAACTTGTGAACGTTTTTTTCTCTTACTCTATGGTTTCCTT GCCCGTCACATGTTTCACTTCTACCGCCTTGCCCATTAACAGTCTTCCGA AGTGCAAACTTAGCTCACGACATTCGATTGAGTCTTGAGTCCCAAATTTC TAACGAATGTCCACCCTACAGAGTACAGACGCTCCTCGGTCGTGCCGGTG CAGGTTTGAGGCTCCGCTGGAGCCTCTGCAGGTGCTAACATGGCTGCTTC TCCTCCTTATCATCGGAGGCTTCTACGCTATCATTGTCCCCGCTCTGCCA AACCTCTGGGCTATCGTGGCATCAATCGTGTACGGGGTGTTGGCCTCTGC CACGGTCCTAGCCGGGGTGTTGGCATGTTGGAAAGACCCGATCGACCCAA ACGTCCGCCGCTTCCACCAGGTACATAGAGCATTTGGCGGTTCCGCTCTG TTTCCCCTGGTATGTACAACAATGAGCAGAGCGTGGCTTCGAGGACGTAT CCAACAATGCCCCTGGACCGCTCCCACGCTCTCTCTTTGCCTGCCCTCGG CACATTTATTCGTTATCTGACATTTTAAACTTGTGTCAAACTGGCAACAT GGTCGTGTGTGCTCGGCTACTGCATGTATGATGTTTTTTGGACGCTCTCA GGGCGAAACTGCAGCAGGGTCGGCAGCGGACAAAACTTTCTGCTTCCTCT GCCAGCTTCATGTGAACAAGGGCAGTCGCCATTGTCGCTATTGCGACAAG TGCGTCGACAGATTCGACCACCATTGCAAGTGGTGAGTCCCAGGGCGAAC GACGGCCAGCTTCCTCCCCGCTTGCACCAACCCTACAGCACAGCAACGAA TGCATTTTCGAAGTCCGTGGCGTTTCTCGTGTCTTGTTTACACACGCCCT TGATTCGTCCTTGCAAGGCGTGTACATAAGCATGTTTTGACGCAACATAT CTACCTACAATGCGGCAACTGCTACGCCCTGCGCGGTAAAACATAAACTT TCATTTTCTCGCTTGTGCCGGCGCCGCTTCTGAGTGATGCTGCGTTGCGA TGTAAGCGTCTCTCATATTAGAGCGGCCGCTATTTGGTGGTGGTGGTTTG TCGTTGATATGTTTCCCACGGCTCGCGGCGCTTTCAATCGTAAGTCGCAG GCCTGAATTTGTGTAACTTGCCCGTGACGCTCGGCGTACAAGTCAATAGC CTACGATAGGCCACAAGGTATACAGTAAGGGAGAAATCCACTGGAACGCG CACGAAGACGGGCTGTCTGCCTTCTGTAGGGCGTGAGACCATTGCTGCCT CGACGTTTTAGTTGCTTGCAACAACCCTGGTATCGAGTTATGAAAGTCTG TCTCATTTTCGGCAACATAACTCGTTTTTTTGTTTTGGCATCACGCCAAT TCTTCCTTCGCCCCCATCGCCCCGTTTTCGTTAAACCTCTGCAGGCTCAA CAACTGCATCGGCCGCAGCAACTACAAGTTCTTCGTTGCGCTTTTGTTGT CGACATTCTCTATGACTTTCATCCAACTTGGACTTTCTGGCTGGTTTGCC GTCCTGTACCACACGGACAACGGGACTTTCAGCGATAGAGGTGGATTTGT GTTCTTCCCCGTTGACTTCCTGTTTGTTGCAAGTTGAACGGCAATATCTA CTTGTTAAATTTCTATGGCAGGTGAACAAACATCGAAAGCATGCCATAAA GTTATCAGGTTGGGCATGTTTGCATGAGATAAATGTACGTGGGAAAAGTT CGCAGTTTGCAAACAAGATTGGCGGGCGGTGATGAAAACGATTCGTGGGA TGCCGCAAAGCGACATCGATTACATGCTTTCAGCACTTCACCTAACCCTC AAGCCCTGCGGCCGTTCCTCTGCACCTCCCCTTCCCTCTGTGCGTCCGTA TTCGGTTGCCAGTCGAAAACCAGTACACACAATTAGACAGGACAGGGCAC ATTGTTCTTGTGTATATATTTGCCGTGATAGTTCTACCCTTCCTCGGACT GCTGGCGCAACTGCTGGGGTTCCACATCATGCTGAGTGAGTCGCTGGAGG GCATTCCTGATAGCTCAATATTTCAATCCGTCTCGTCACTCCTGTATTGT TGCACAGGCGCGCTTTTTTATTTCTCGGGTAAGAACTCACATGCCCTGCC AGCAGATATCTTGACGATCGCTTGCAGGGGTCGTGGTAACGACGTGACTC GAGCACCCATCGAGTGGTACAGGCCACTGGGTACACAAGGACGCAAGACG CTGCCCCGGTACAGGAGATGACTGAGTTATATGCTGTAGCGTTCATTGCA TGTGTGTGTCTCACGTCCTCTCCTCCGCCCAAACCCTTTGTTTTCGCAGT CTCACAGGACTTGACAACGTACGACTACATCGTACAGGAGCAGCGGAAAG AGCGGGAACGCAAGGAGCGACGAAGAAAATTGAAGGTCCGTACATGCTTC TCGACCACTTTGGTCCATACTCGATGGGGGTATGTATATGGGTTGCTTTT TGTAGCAAAGAGGTTGATGACGGTTTAGTCTTTTTCGCCTCGATGTGTTC GTGACTGATACGTACGACTTGGACGCATGAAGGTGAAAGCAACGGTGACT GACATCGCCTTTTCTGTTTCTAAAATAGCCCGTGATGGTTGACCGCGCGC GCCCTGTGCTTTGTGACCAATCATGCAGGAAAAGCCAGGAGCGCGTTCAG CATCGGCGTGCTGCGGTGACGTGTCTAGTCGAGTGGGGGAAACGGACAAC GCCGGAAAAACAGGGCAAAGCTTCGTGCCATGACACCGTTCCGATTGCGT TCTTTGGCAGGTACTGCTGTATTTGCTTGTCTCTGTAGCGGTTAGTTTAA CTTGGATGAGTTCACCGAACTCTTATTGTTTTAGTTGGAGTGTGTTGGAC AGGCAATGGCTATATCTTGCCCTGTATCGGGTATTTTTGTTGAATAGTGA CAAGACCAAAGTTTAAGTTCAGATGGCGTTTCGCATGGGGCACACCCTTT TAGATTGAAACGGGGTTGGGTGGCGGACCTTCCCTGTCCTCTGTGCGTGA AGAACTGAGAATGCTGGTGCTGGGGTGGTCAAAACGCATCTGTTCTCAGC CTGCGACGTTTCGTTAAGCAAAACGATGTTCTGTGCGAAGCGGGAAACGA TGATGCTGGCATTTGAAGAACTATTGCAAGCATAAAGCCGGCGTCGTTGT TGGCGTACCTGCCTAACTTTCAATTGTCCAATTATAGTCATGTCATGTAC GCCGAAGTCTACCATTTCCTGCTGAGGACCGCAGAGCGCGAAATGCACGA CTATACTACTTTCAGTTATTGCCGAGCGCTGCGGCCTTCTTGCTGTCGTT GACCATGAACTGCCGACGGCGCTTTTGTCGAACATCGTACTTCGACACAG TGCCGATTTGATCGCGACGAGGAGCTCCTTGCTCGCGCTTTCGTCGGTCA GATCGCCTCTCCTTTTTCATGGTTAGCATCCAATCTGGGACCTGCCCGGC AGTCGATGGTCCACGGAATGAGGTGGTGGCACGTACTGGCACGTACTGGC GTTGATGAGGGAGGACAGAAGTTGTATATCTCAATTTAAGCCTTGCGCCC CACCTTTCACCCAAGATGGTCGGTGTTAATCCCAGCACTTGCCGTGAAAC TTACTTGGAGCCTTGTTCAGCGAGAAGCGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:1104296..1108127+

>mRNA_C-linearis_contig9.16526.1 ID=mRNA_C-linearis_contig9.16526.1|Name=mRNA_C-linearis_contig9.16526.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at C-linearis_contig9:1104296..1108127+ (Chordaria linearis ClinC8C monoicous)
ATGTCCACCCTACAGAGTACAGACGCTCCTCGGTCGTGCCGGTGCAGGTT
TGAGGCTCCGCTGGAGCCTCTGCAGGTGCTAACATGGCTGCTTCTCCTCC
TTATCATCGGAGGCTTCTACGCTATCATTGTCCCCGCTCTGCCAAACCTC
TGGGCTATCGTGGCATCAATCGTGTACGGGGTGTTGGCCTCTGCCACGGT
CCTAGCCGGGGTGTTGGCATGTTGGAAAGACCCGATCGACCCAAACGTCC
GCCGCTTCCACCAGATGTCCACCCTACAGAGTACAGACGCTCCTCGGTCG
TGCCGGTGCAGGTTTGAGGCTCCGCTGGAGCCTCTGCAGGTGCTAACATG
GCTGCTTCTCCTCCTTATCATCGGAGGCTTCTACGCTATCATTGTCCCCG
CTCTGCCAAACCTCTGGGCTATCGTGGCATCAATCGTGTACGGGGTGTTG
GCCTCTGCCACGGTCCTAGCCGGGGTGTTGGCATGTTGGAAAGACCCGAT
CGACCCAAACGTCCGCCGCTTCCACCAGGGCGAAACTGCAGCAGGGTCGG
CAGCGGACAAAACTTTCTGCTTCCTCTGCCAGCTTCATGTGAACAAGGGC
AGTCGCCATTGTCGCTATTGCGACAAGTGCGTCGACAGATTCGACCACCA
TTGCAAGTGGGCGAAACTGCAGCAGGGTCGGCAGCGGACAAAACTTTCTG
CTTCCTCTGCCAGCTTCATGTGAACAAGGGCAGTCGCCATTGTCGCTATT
GCGACAAGTGCGTCGACAGATTCGACCACCATTGCAAGTGGCTCAACAAC
TGCATCGGCCGCAGCAACTACAAGTTCTTCGTTGCGCTTTTGTTGTCGAC
ATTCTCTATGACTTTCATCCAACTTGGACTTTCTGGCTGGTTTGCCGTCC
TGTACCACACGGACAACGGGACTTTCAGCGATAGAGGCTCAACAACTGCA
TCGGCCGCAGCAACTACAAGTTCTTCGTTGCGCTTTTGTTGTCGACATTC
TCTATGACTTTCATCCAACTTGGACTTTCTGGCTGGTTTGCCGTCCTGTA
CCACACGGACAACGGGACTTTCAGCGATAGAGTCGAAAACCAGTACACAC
AATTAGACAGGACAGGGCACATTGTTCTTGTGTATATATTTGCCGTGATA
GTTCTACCCTTCCTCGGACTGCTGGCGCAACTGCTGGGGTTCCACATCAT
GCTGATCGAAAACCAGTACACACAATTAGACAGGACAGGGCACATTGTTC
TTGTGTATATATTTGCCGTGATAGTTCTACCCTTCCTCGGACTGCTGGCG
CAACTGCTGGGGTTCCACATCATGCTGATCTCACAGGACTTGACAACGTA
CGACTACATCGTACAGGAGCAGCGGAAAGAGCGGGAACGCAAGGAGCGAC
GAAGAAAATTGAAGTCTCACAGGACTTGACAACGTACGACTACATCGTAC
AGGAGCAGCGGAAAGAGCGGGAACGCAAGGAGCGACGAAGAAAATTGAAG
GAAAAGCCAGGAGCGCGTTCAGCATCGGCGTGCTGCGGTGACGTGTCTAG
TCGAGTGGGGGAAACGGACAACGCCGGAAAAACAGGGCAAAGCTTCGTGC
CATGAGAAAAGCCAGGAGCGCGTTCAGCATCGGCGTGCTGCGGTGACGTG
TCTAGTCGAGTGGGGGAAACGGACAACGCCGGAAAAACAGGGCAAAGCTT
CGTGCCATGA
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