mRNA_C-linearis_contig89.16427.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE) HSP 1 Score: 345 bits (885), Expect = 1.170e-95 Identity = 377/896 (42.08%), Postives = 454/896 (50.67%), Query Frame = 2
Query: 548 EGSQQAAAARAKELEVHESFLAMLGERSYDEKRQTLDYLADPTSRGDNPRIPAVSAARKQDVLLADRPVSSWPKDVAMDADYEGLSSDLADERI--RAG------GD-WRSAPSAEWMRLVPPMKRRAQQPAAVRGGRGGPSPRRGPGGSAFQVFKADDTESAEGGAAKRPR-LGTRLGYDRYGEDELF----RVDDQDRDEAR----ARRPVVPAASPAATFSPGTTTSTSLVVAAGGGALRTPNPTRARGPRGALPNR-RRVSIAAPLRYRNTGYRSQDYTPLVHKKRRSMSGGQRFGAGTLGDFLGETGTGSRSARSPSAAGANDGRRSSSDRLGSSPGLGGEASKRLAEDGQEGRDVPLSARGRGQARGSGSPAAGSKRAASHLGLAGMNATPRRRVL----EEAVAREGKMLVKKVEAEAEATAFVGGILMKVVSQESKSRDVGRQVREEQVRRANKNXXXXXXXXXXXXPKRVGTEQRT--------DERGSRTKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAPLAATQPAASLFAFPPPTSASSPSPAQKGSEFDFKDALAPGRL----QQQGGDAANGGGDLMAXXXXXXXSCSDADFAFGTTTSRRAPAR---RAAEVFFRFSQSFPGKRAAS-ARDKDSGTLALASDRDEDDAMGGDPPAFEFSTEPRKARKTRRGATAGKTSAEQTAMAPLDVAPLAIAGASSKPSGGXXXXXXXXXXXXSAAPPVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
+G++ RAK+L +E A+LG+RSY EKR + +LADPT+R NPR+P + A +K+ V A RPV SW + + D EG + DLADER RAG GD WR APS+EW RLVP M+RRA QPA R S +R G SAF F A T +A A R L R GYD DEL R+D+QDRD+A ARR P A A+ G T + + AA G RTP P RA G G R RR S+ + LRYR S+++TP + +++G QR+GAGTLGD+LGET + R +ASKR A QE PL +G Q + +G+PAA +KRAAS LGL GM+ATPRR+ + E AVA EG+ LV++V AEA+ATA VG ILM VVSQES+ RDV RQVREEQ R + +R G Q T D RGS ++ A AP AA ++ SEF F + P RL QQ+ GDA +G GD C D DFAFG ++ PAR R + F FS P KRA + ++G L D D G AFEFST+PRKAR+TRRG AGK++ EQ MAPL VAPL++AG S + PGEWKC ACLVRN P TKC SCE PKPG +A FTFGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGFDMS F+KPGEWKCDACLVRN P TKC S
Sbjct: 1777 DGARATGRGRAKQL--NEELDAVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRASRPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATGDKWRRAPSSEWTRLVPTMQRRAGQPAV----RAVASTKRTLG-SAFGAFTALGTSAAAVHLAGDLRKLSARPGYDG---DELTPMLQRLDEQDRDDAATAAAARRRPAPDAGAMASGFTGATNLSLVRAAAAGTPSRTPKPARAGGGLGVGAARDRRQSVGSALRYR-----SREFTPR-RRPSLAVAGEQRYGAGTLGDWLGET---PKQPRPGXXXXXXXXXXXXXXXXXXXXXXXXQASKRRAVRRQE---SPLLVQGL-QGQENGTPAASNKRAASSLGLDGMDATPRRKTMAIMEERAVAEEGRELVRRVAAEAKATAEVGSILMSVVSQESRGRDVTRQVREEQGLRERETQKKTELN------QRAGGNQPTTGEAGKVADVRGSPGHEEREEERRKQDDKRGRSETASFTFAAATRPPVAVAPQAAAW--------------------RESSEFGFTTSPGPARLRLQQQQENGDANDGWGDGAMSVDSLYPDC-DGDFAFGAPSASHPPARSAQRQQQPLFCFSNPPPVKRALEYGQGSETGVLTTTDDMGRDIPAG----AFEFSTKPRKARRTRRGVAAGKSAVEQQ-MAPLAVAPLSVAG--------------------SGDXXXXXXXXAKTSEPPGEWKCGACLVRNPPDATKCLSCEVPKPGA--SPAAXXXXXXXXXXXXXXXXXPKFTFGVVPDA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASTSTAPTAGGFDMSKFRKPGEWKCDACLVRNPPDATKCLS 2594
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI) HSP 1 Score: 315 bits (806), Expect = 1.500e-85 Identity = 365/891 (40.97%), Postives = 439/891 (49.27%), Query Frame = 2
Query: 566 AAARAKELEVHESFLAMLGERSYDEKRQTLDYLADPTSRGDNPRIPAVSAARKQDVLLADRPVSSWPKDVAMDADYEGLSSDLADERI--RAG------GD-WRSAPSAEWMRLVPPMKRRAQQPAAVRGGRGGPSPRRGPGGSAFQVFKADDTESAE-GGAAKRPRLGTRLGYDRYGEDELF----RVDDQDRDEARARRPVVPAASPAATFSPGTTTSTSLVVAAGGGALRTPNPTRARGPRGALPNR--------RRVSIAAPLRYRNTGYRSQDYTPLVHKKRRSMSGGQRFGAGTLGDFLGETGTGSRSARSPSAAGANDGRRSSSDRLGSSPGLG-GEASKRLAEDGQEGRDVPLSARGRGQARGSGSPAAGSKRAASHLGLAGMNATPRRRVL----EEAVAREGKMLVKKVEAEAEATAFVGGILMKVVSQESKSRDVGRQVREEQ-VRRANKNXXXXXXXXXXXXPKRVGTEQRT-DERGSRTKQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAPLAATQPAASLFAFPPPTSASSPSPAQKGSEFDFKDA-LAPGRLQQQGGDAANGGGDLMAXXXXXXXSC---SDADFAFGTTTSRRAPARRAA----EVFFRFSQSFPGKRAAS-ARDKDSGTLALASDRDEDDAMGGDPPA--FEFSTEPRKARKTRRGATAGKTSAEQTAMAPLDVAPLAIAGASSKPSGGXXXXXXXXXXXXSAAPPVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
A R + +V+E ++LG+RSY EKR + +LADPT+R NPR+P + A +K+ V A RPV SW + +D D EG + DLADER RAG GD WR APS+EW RLVP M+RRA QP R S +R G SAF F A T +A A +L R GYD DEL R+D+QDRD+A RR S+ + LRYR S+++TP + +M+G QRFGAGTLGD+LGE R P GA G G+ASKR QE PL G Q + SG+PAA +KRAAS LGL GM+ATPRR+ + E AVA EG+ LV++V AEA+ATA VG ILM VVSQE+K RDV RQVREEQ +R N +G + D R SR +++ AATQ L P +A+S ++ SEF F + P RL X S D DFAFG ++ PAR A + F FS P KRA + ++G L D MG D PA FEFST+PRKAR+TRRG AGK++ EQ MAPL VAPL++AG+ S+AP +TNGFDMS F+KPGEWKC ACLVRN P TKC SCE PKPG + T FTFGV G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGFDMS F+KPGEWKC ACLVRN P TKC S
Sbjct: 1507 ATGRGRAKQVNEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPILDIDQEGQAEDLADERTTKRAGAWCGATGDKWRRAPSSEWTRLVPTMQRRAGQPVV----RVVASTKRTLG-SAFGTFTARGTSAAAVHHAGDLRKLSARPGYDG---DELTPMLRRLDEQDRDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARDRRQSVGSALRYR-----SREFTPR-RRPSLAMAGEQRFGAGTLGDWLGEAPKQPR----PGPVGAAAXXXXXXXXXXXXXXTGQGQASKRREVGRQE---SPLLVEG-SQGQESGTPAASNKRAASSLGLDGMDATPRRKTMAMMDERAVAEEGRELVRRVAAEAKATAEVGSILMSVVSQENKGRDVTRQVREEQGLRERETNKKTELNQRAGGTQPTIGEAGKVADVRDSRGQEEREVKERRKQDEKKRGRSETASFTFA----------AATQ----LPVAVAPQAAAS----RESSEFGFTTSPKGPARLXXXXXXXXXXXXXXXXXGAMSVDSMYPDCDGDFAFGVPSASHPPARSAQRQQQQPLFCFSDPPPVKRALEHGQGSETGVLTTTDD------MGRDVPAGAFEFSTKPRKARRTRRGVAAGKSAVEQQ-MAPLAVAPLSVAGSGGGAKTSEPSKVAAGAAAASSAP-ITNGFDMSKFRKPGEWKCGACLVRNPPDATKCLSCEVPKPGA--SAXXXXXXXXXXXXXXXXXXTPKFTFGVVPDAGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTAPTA-GGFDMSKFRKPGEWKCAACLVRNPPDATKCLS 2346
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A1S3NYS8_SALSA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=3 Tax=Salmo salar TaxID=8030 RepID=A0A1S3NYS8_SALSA) HSP 1 Score: 68.6 bits (166), Expect = 7.840e-8 Identity = 46/156 (29.49%), Postives = 55/156 (35.26%), Query Frame = 2
Query: 2657 PVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFT--FGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
P +GF + KKPG+W CD C VRN+ C SC+TP P G A G+ A AT S FG + GF KK G+W CD CLVRND +KC S
Sbjct: 928 PFDSGFGVQFGKKPGQWDCDTCAVRNEASANSCLSCQTPNPS------------GKAAAGAPALATLSTRSGFGAQFSNKLGQWDCDTCVVRNEASSSSCVSCQTPNPSAKSTVEVAPTTKPTVSGFAALFSKKDGQWDCDTCLVRNDASASKCVS 1071
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: UPI0019018110 (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salvelinus namaycush TaxID=8040 RepID=UPI0019018110) HSP 1 Score: 66.6 bits (161), Expect = 3.150e-7 Identity = 43/153 (28.10%), Postives = 58/153 (37.91%), Query Frame = 2
Query: 2660 VTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
+ +GF KKPG+W+CD CLVRN+ + C SC+TP P D +A + P+T SF A G GF KKPG+W CD C+VRN+ ++ C S
Sbjct: 1555 IGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNPVAKTDVDGAA---------ESKPSTMSF-----GAPGLATLSTG-------------------------------------SGFGAQFSKKPGQWDCDTCVVRNEASSSSCVS 1656
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A673XRX8_SALTR (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673XRX8_SALTR) HSP 1 Score: 66.2 bits (160), Expect = 4.070e-7 Identity = 42/151 (27.81%), Postives = 52/151 (34.44%), Query Frame = 2
Query: 2666 NGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
+GF KKPG+W CD C VRN+ C SC+TP P G A G A AT S G + G GF KK G+W CD C+VRN+ ++ C S
Sbjct: 1424 SGFGAQFSKKPGQWDCDTCAVRNEASANSCLSCQTPNPS------------GKAAAGGPALATLSTRSGFGAQFGKKTGQWECDVRNDESTSSCVSCQTPNPPSTMPFGAPASATLSTGSGFGAQFSKKLGQWDCDTCVVRNEASSSSCVS 1562
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.220e-6 Identity = 27/35 (77.14%), Postives = 27/35 (77.14%), Query Frame = 2
Query: 2684 MFKKP-GEWKCDACLVRNDPGTTKCASCETPKPGV 2785
MFK GEWKCDACLVRN PG TKCASCETP G
Sbjct: 73 MFKAAAGEWKCDACLVRNAPGATKCASCETPAAGA 107
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: UPI001E1C7C7C (E3 SUMO-protein ligase RanBP2 isoform X3 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C7C7C) HSP 1 Score: 63.9 bits (154), Expect = 2.080e-6 Identity = 44/156 (28.21%), Postives = 59/156 (37.82%), Query Frame = 2
Query: 2657 PVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFT--FGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
P ++GF + KKPG+W+CD CLVRN+ + C SC+TP D + G+ + P+T F+ FGV GF KK +W CD CLVRND +KC S
Sbjct: 1467 PFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNQA---DKTVVDGAAASM------PSTIPFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNPTAKSTVEVAPPPKPTVSGFGDLFSKKDRQWDCDTCLVRNDASASKCIS 1613
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: UPI001E1C888B (E3 SUMO-protein ligase RanBP2 isoform X2 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C888B) HSP 1 Score: 63.9 bits (154), Expect = 2.080e-6 Identity = 44/156 (28.21%), Postives = 59/156 (37.82%), Query Frame = 2
Query: 2657 PVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFT--FGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
P ++GF + KKPG+W+CD CLVRN+ + C SC+TP D + G+ + P+T F+ FGV GF KK +W CD CLVRND +KC S
Sbjct: 1467 PFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNQA---DKTVVDGAAASM------PSTIPFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNPTAKSTVEVAPPPKPTVSGFGDLFSKKDRQWDCDTCLVRNDASASKCIS 1613
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A673XS05_SALTR (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673XS05_SALTR) HSP 1 Score: 63.5 bits (153), Expect = 2.690e-6 Identity = 43/154 (27.92%), Postives = 53/154 (34.42%), Query Frame = 2
Query: 2657 PVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
P +GF + KKPG+W CD C VRN+ C SC+TP P SG AGG PA ++ + G GF KKPG+W CD C VRN+ C S
Sbjct: 1347 PFDSGFGVQFGKKPGQWDCDTCAVRNEASANSCLSCQTPNP-----------SGKPAAGG---PALATLSNG--------------------------------------------------SGFGAQFSKKPGQWDCDTCAVRNEASANSCLS 1436
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Match: A0A673XS32_SALTR (E3 SUMO-protein ligase RanBP2-like n=2 Tax=Salmo trutta TaxID=8032 RepID=A0A673XS32_SALTR) HSP 1 Score: 63.5 bits (153), Expect = 2.700e-6 Identity = 43/154 (27.92%), Postives = 53/154 (34.42%), Query Frame = 2
Query: 2657 PVTNGFDMSMFKKPGEWKCDACLVRNDPGTTKCASCETPKPGVGGDSSASAGSGGILAGGSNAPATSSFTFGVSSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDMSMFKKPGEWKCDACLVRNDPGTTKCAS 3118
P +GF + KKPG+W CD C VRN+ C SC+TP P SG AGG PA ++ + G GF KKPG+W CD C VRN+ C S
Sbjct: 1327 PFDSGFGVQFGKKPGQWDCDTCAVRNEASANSCLSCQTPNP-----------SGKPAAGG---PALATLSNG--------------------------------------------------SGFGAQFSKKPGQWDCDTCAVRNEASANSCLS 1416 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig89.16427.1 >prot_C-linearis_contig89.16427.1 ID=prot_C-linearis_contig89.16427.1|Name=mRNA_C-linearis_contig89.16427.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=835bp MLGERSYDEKRQTLDYLADPTSRGDNPRIPAVSAARKQDVLLADRPVSSWback to top mRNA from alignment at C-linearis_contig89:579099..583121- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig89.16427.1 ID=mRNA_C-linearis_contig89.16427.1|Name=mRNA_C-linearis_contig89.16427.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4023bp|location=Sequence derived from alignment at C-linearis_contig89:579099..583121- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig89:579099..583121- >mRNA_C-linearis_contig89.16427.1 ID=mRNA_C-linearis_contig89.16427.1|Name=mRNA_C-linearis_contig89.16427.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5010bp|location=Sequence derived from alignment at C-linearis_contig89:579099..583121- (Chordaria linearis ClinC8C monoicous)back to top |