mRNA_C-linearis_contig87.16322.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16322.1
Unique NamemRNA_C-linearis_contig87.16322.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.270e-70
Identity = 342/461 (74.19%), Postives = 352/461 (76.36%), Query Frame = 3 
Query:  183 AMTASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQASLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKKVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANGNXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPHKDSA---SNGVANGDGMKTPVKGDGAEANGDG---------GKSSTGXXXXXXKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1529
            A  A+A+ED+PASALHPL+HSFLLECGLS TAAALREETGKSSKKL K QA+LGGGC+DLL IVN HRKRLA  AA A   +VQED+ HTKK      XXXX                                        ANG               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WVPK LTP+K      SNGVANGDGMKTP KG                  GK STG      KSRTQGEAFKRVQDE+WVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    4 AAAAAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXK-------------------------------------GKANG-----------VKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGG-----KSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.140e-64
Identity = 371/528 (70.27%), Postives = 383/528 (72.54%), Query Frame = 3 
Query:  183 AMTASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQASLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKK--------------------------------------------------------------VRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANGNXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPHK--DSASNGVANGDGMKTPVKGDGAEANGDG---------------GKSSTGXXXXXXKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1529
            A  A+A++D+PASALHPL+HSFLLECGLS TAAALREETGKS+KKL K QA+LGGGC+DLL IVN HRKRLA  AA A   +VQEDV HTKKVKK                                                                AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A A   XXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXAWVPK LTP+K     SNGVANGDGMKTP KG      G G               GK STG      KSR+QGEAFKRVQDE+WVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    4 AAAAAAVDDLPASALHPLVHSFLLECGLSATAAALREETGKSAKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDVAHTKKVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKGKGKANGVKPKKVVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAAAKAAAKAXXXXXXXXXAESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDADNSXXXXXXXSDSDXXXXXXXXXXXXXXXXXXXXXXXXSDGDDSXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKDLTPNKAGGGVSNGVANGDGMKTPAKG------GQGXXXXXXXXXXXXXXXGKKSTGG-----KSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 103 bits (257), Expect = 4.520e-21
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3 
Query: 1278 RTQGEAFKRVQDEEWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG*CLDDAE 1550
            R QGEAFKRV  + W   +K     DN+YEGTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD    DD E
Sbjct:  158 RVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD----DDEE 245
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE)

HSP 1 Score: 98.2 bits (243), Expect = 1.120e-20
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 3 
Query: 1272 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1526
            K  T G+AF+RV+ EEW+G  KKG  DN YE TFGQ G+G+KA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:   31 KVGTAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.160e-20
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 3 
Query: 1287 GEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 1520
            GEAF+RV+DEEWV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  443 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.350e-20
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3 
Query: 1281 TQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1526
            T  +AF+RV++EEW+G  KKG  DN+Y GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.940e-20
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 3 
Query: 1278 RTQGEAFKRVQDEEWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 1517
            R  GEAF+RV DE W   +K     DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 5.300e-20
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 3 
Query: 1272 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 1526
            K  T  +AF+RV++EEW+G  KKG  DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  205 KFGTAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 102 bits (255), Expect = 9.490e-20
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 3 
Query: 1272 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1526
            K  +  +AF+RV+ EEW+G  KKG  DN+YEGTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  298 KGNSTFKAFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380
[Close]
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE)

HSP 1 Score: 102 bits (255), Expect = 1.120e-19
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 3 
Query: 1272 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1526
            K  T  +AF+RV+ EEW+G  KKG  DN+YEGTFGQGG+GFKA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:  310 KPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI1.270e-7074.19LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.140e-6470.27LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3Y1Y8_HETAK4.520e-2163.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A8JCQ6_CHLRE1.120e-2061.63Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A836CH62_9STRA1.160e-2070.51SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A061RD47_9CHLO1.350e-2064.63SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A4D9D037_9STRA1.940e-2067.90SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S1T5X8_9CHLO5.300e-2062.79Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3QVY0_DUNTE9.490e-2063.53Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A150FVM7_GONPE1.120e-1963.95SRP40_C domain-containing protein n=1 Tax=Gonium p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:761373..766445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue7.3e-64
Seed eggNOG ortholog2880.D7FH06
Preferred nameSRP40
KEGG koko:K10771,ko:K11294
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.RNA polymerase I core binding
EggNOG OGsKOG2992@1,KOG2992@2759
Ec32 ortholog descriptionSRP40, C-terminal
Ec32 orthologEc-26_003010.1
EC4.2.99.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
Exons7
Model size2355
Cds size1347
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.1256645-UTR-C-linearis_contig87:761372..7621951622930675.1256645-UTR-C-linearis_contig87:761372..762195Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 761373..762195 -
1690881190.4269636-UTR-C-linearis_contig87:761372..7621951690881190.4269636-UTR-C-linearis_contig87:761372..762195Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 761373..762195 -
1622930675.2958724-UTR-C-linearis_contig87:766260..7664451622930675.2958724-UTR-C-linearis_contig87:766260..766445Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 766261..766445 -
1690881190.5072074-UTR-C-linearis_contig87:766260..7664451690881190.5072074-UTR-C-linearis_contig87:766260..766445Chordaria linearis ClinC8C monoicousUTRC-linearis_contig87 766261..766445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930675.1446693-CDS-C-linearis_contig87:762195..7623631622930675.1446693-CDS-C-linearis_contig87:762195..762363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 762196..762363 -
1690881190.4390414-CDS-C-linearis_contig87:762195..7623631690881190.4390414-CDS-C-linearis_contig87:762195..762363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 762196..762363 -
1622930675.1605496-CDS-C-linearis_contig87:762806..7629631622930675.1605496-CDS-C-linearis_contig87:762806..762963Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 762807..762963 -
1690881190.4478898-CDS-C-linearis_contig87:762806..7629631690881190.4478898-CDS-C-linearis_contig87:762806..762963Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 762807..762963 -
1622930675.1794655-CDS-C-linearis_contig87:763248..7634091622930675.1794655-CDS-C-linearis_contig87:763248..763409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 763249..763409 -
1690881190.458017-CDS-C-linearis_contig87:763248..7634091690881190.458017-CDS-C-linearis_contig87:763248..763409Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 763249..763409 -
1622930675.2419438-CDS-C-linearis_contig87:763724..7638771622930675.2419438-CDS-C-linearis_contig87:763724..763877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 763725..763877 -
1690881190.4678614-CDS-C-linearis_contig87:763724..7638771690881190.4678614-CDS-C-linearis_contig87:763724..763877Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 763725..763877 -
1622930675.2569382-CDS-C-linearis_contig87:764375..7649361622930675.2569382-CDS-C-linearis_contig87:764375..764936Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 764376..764936 -
1690881190.4778726-CDS-C-linearis_contig87:764375..7649361690881190.4778726-CDS-C-linearis_contig87:764375..764936Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 764376..764936 -
1622930675.2682495-CDS-C-linearis_contig87:765384..7654621622930675.2682495-CDS-C-linearis_contig87:765384..765462Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 765385..765462 -
1690881190.4895434-CDS-C-linearis_contig87:765384..7654621690881190.4895434-CDS-C-linearis_contig87:765384..765462Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 765385..765462 -
1622930675.2830746-CDS-C-linearis_contig87:766191..7662601622930675.2830746-CDS-C-linearis_contig87:766191..766260Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 766192..766260 -
1690881190.4982154-CDS-C-linearis_contig87:766191..7662601690881190.4982154-CDS-C-linearis_contig87:766191..766260Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 766192..766260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16322.1prot_C-linearis_contig87.16322.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 762196..766260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16322.1

>prot_C-linearis_contig87.16322.1 ID=prot_C-linearis_contig87.16322.1|Name=mRNA_C-linearis_contig87.16322.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=449bp
MTASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQA
SLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKKVRAAAA
AAAAVVASSSSSSSSSSSSSSEEEEESDEESEEEVPEKKADANGNKPEAN
GKKPKKVAAAAAAAAESSSEDESSDDSDSEESSSEEEEEKEEKQEQKRPK
KRKAAEAESSSEEESESDDDDDDNDKTKKPPAKKKKVEPADAAAAADDES
SSSSDSSSDSSSDSSSSSDSSDSDDSSSSDDETDEEQEAERAMVKASAEK
ERRRSSAAAAAAWVPKVLTPHKDSASNGVANGDGMKTPVKGDGAEANGDG
GKSSTGKKSTGSKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGG
YGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG*
back to top

mRNA from alignment at C-linearis_contig87:761373..766445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16322.1 ID=mRNA_C-linearis_contig87.16322.1|Name=mRNA_C-linearis_contig87.16322.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5073bp|location=Sequence derived from alignment at C-linearis_contig87:761373..766445- (Chordaria linearis ClinC8C monoicous)
AAGGACACAGGACACACCGCGAATTGCTGTCTTGTTCTCTCTCGCCCTGG
CCGTGAGGTAGCGAAGCCATCGGACAACCGACCGAAAGCTCGAGAAAGAA
GTCAAGTTGAGCTTCTAGCAGTGATACTCCCCGCCTCGAGTGGGCCGTCC
AACACACGAACACACAGCAGCAGACGCGCGTGGCCATGACAGCATCAGCA
ATCGAGGACATCCCGGCCAGCGCCCTGCACCCTCTGCTCCACTCCTTCCT
GCTGGTGAGATAGCCTTTAGCTTCAGGAGTGGAGACAGGCCGACGCTCCC
ATTCCAGCTGCTGGCTGGCGTGTTCTTGGTAGCCTCAGCCTTGTTGTCTC
AGCAAGGCAGTTAGTTACACGCAACCTGGCTGGGCGGTTGACAGCCGCGC
AGTGTAAAACGAACATTTTTGAACCTACGCCCTGTACTTGTACTTGTAGC
GCCTTCTCTTCTCGGGTGTCTTGGTGCTAGTGCGCCGGCCTGGCTCGCGC
GTTACAGAGGCCTCCCTGTTCAGAAATTGGTGCGGTCAAGTACTGGGTCC
AGGTCAGGTGGTTATTGCCGAATTTGTTTGGTGGCACCCGCAAACAAACT
CGGGGTGTGGAGTGTTGTGGGATAGCACACCATGTACTTTGGAGCCGCCC
ACGCCGGCGCACATGATCGTACGCAAACCAGCCAAGTTACGACGTTCCCT
CCAACACCTTTCAGTGTAGAACTGCTGCAAGAACCCCTTGCTTGCGTTTC
GCAGCGGGTTGTATGTACACTGAAGAGCAGGGGCTGAAACATTGTATATG
GGGGTGGAAGGCCCTCAACCCGGATACGCGTTGGCTTCAGGGAAACGGCC
CTGTGTGCACAGAGCAGCTAGTGCAGCTACACCTGAGACAAGGACGGTAT
CTAAAAGGCAGAGTCGTGTAAGATATGTCACCCAATCAAGCTGAACCGGT
GATGTGTCGCTCCTCTTCCTGTCATTTTGTCAGGAATGCGGACTTTCAAC
CACGGCGGCAGCCCTGCGCGAGGAGACGGGCAAGAGTTCGAAAAAGCTCG
CGAAAGCCCAGGTACATACATACGGGTTCGCTCTTGTAGTGGCGTGCGCG
TTCACGCAAGAGTTGTTTTATCATTACGCCTGTCGACGACAGCGGTGTAG
ATTGGCACACTCGGCGATTTCGGAGGCTCGCTAGTACCTCTCTTGTTTGT
GACACCGGCACATCTGCACATCTGTTGTGTCGTTGTCCTCTTCGCGTGTC
CATACCGCCAAGACTCTGCGGTCGGTCGTGTTGTTGTTTTGGTTGGGCGA
TATCTGCATTTTGCTGCTGCCAAGTTTTCATGTGAACATGACGATGCTGT
GTTCTAATTTGATCTGATGGGGGGTGTCTGTGGCCCACCGACACGACCCA
ACGTTTCACTGCTGCCCCCCGCTCAGCTTTATGCTCTCGAAAGCAACTCC
TTGTTTGCTGCGCTGCTGCTTGTCCTCCTTCTGGCGCGTATCTTACACGC
AACACGCAGGCATCGCTGGGAGGGGGCTGCGAAGATCTTTTGGGGATCGT
GAACCTCCACCGCAAGCGTCTCGCGGAGGCGGCGGCAGATGCGGAGGACA
GCGAGGTGCAAGAGGACGTGGTACACACCAAGAAGGTGAAGAAAGTCAGG
GCAGCTGCAGCGGCTGCGGCAGCGGTGGTGGCTTCTTCTTCATCATCGTC
GTCCAGCAGCAGCAGCAGCAGCAGCGAAGAAGAAGAAGAGAGCGACGAAG
AGAGTGAGGAAGAAGTCCCGGAGAAAAAGGCCGATGCAAACGGTAACAAA
CCCGAGGCGAACGGCAAGAAGCCCAAGAAGGTAGCTGCGGCGGCGGCAGC
AGCGGCTGAGTCTAGCAGCGAGGACGAGAGCAGCGACGACAGCGATAGCG
AGGAATCTTCGTCCGAGGAGGAGGAAGAAAAGGAGGAGAAGCAGGAACAA
AAGCGACCGAAAAAGCGGAAGGCGGCAGAGGCGGAGTCGTCTTCTGAGGA
GGAAAGCGAGAGCGACGACGATGACGACGACAACGACAAAACGAAGAAGC
CCCCCGCTAAAAAGAAGAAGGTAAGAGAGTCCCGTTTTTTGGTCTGCTCG
CTCGTCCGGTGTGCCGGGTATCACACTATTTCCCATCATCTCAGCAAACC
CTTCCCAAGAGAGTAGTCGGGTTGACCCGAGCTGAGTTGAGTTCAGCTCC
TTCGAGAAACACGACGCCGGTCGCGTGTTTTCGCCGTTCCGCCTCCCGTT
TTGTGTGCGATGCGACCTTCACGTCGTGCTCGGCGTTGGTTTTGCGTGCA
GGGCGTTCTAAGCATGCTGGTCGTTCTAAGCAACGTGTCGTTTGATGTCC
CTTGTGTCGAAGGAACCAAGAGACAACGTGACCAGTTGTTTGGATTGCGC
GACCTTCGTGCGCACTGCTTTTGCTGCTTTTGCTGCTGTTGCTGCTGCTC
TTGTTGCTCTTGTTTTGCTCGGTCGTCACCACACCAATCATATAGATCCA
TCGATTCCGCGGGAAACGCCCCCGATCCCAACCTATAATGCTAAATTCTC
TTGCTGTCGTTGTGGCAGGTGGAACCTGCTGACGCTGCAGCTGCCGCCGA
TGACGAGAGTAGCAGCAGCAGCGACAGCAGCAGTGACAGCAGCAGTGACA
GCAGCAGTAGCAGTGACAGCAGCGACAGCGACGACTCTTCCTCCTCGGAC
GATGAGACGGACGAAGAACAGGTGTGTGGTGTTTTCGTCTGTGGGTGTGC
TTGTTCGGTGTTGATCTCTCGGCTTTCCCATCTGTCGCCGATCGCCGATC
GTCTGTTAAGTCGTACCTGGTAGTTGTCTGTCTTCTGAGTGGAGTTTTAC
GGGTTCTTTCTTCCTTTCGCCCTTTTGCGGGTCTCGTTCTCTTTCGCCTG
GAACGATTCGTCGATTAACTGCTGCTTTTCAAATGTCCCCGTCTGCCCAT
CCTTTTCTAACCTCGATGCTGCCTGGCATAACGTTCCGCCGCAAAAAATT
ATGGCGTTGCCTTTCGTTTATTCTTTCTTTTTCTAGGAGGCAGAAAGGGC
GATGGTGAAAGCGTCTGCGGAGAAGGAGAGGAGGCGATCCTCGGCGGCCG
CGGCGGCGGCGTGGGTTCCCAAGGTTCTGACGCCCCACAAAGACTCCGCT
TCCAACGGCGTGGCAAACGGTGACGGCATGAAGACACCGGTTAAGGGGTG
AGTATGCGAATGGGAAGGCATGATGCTCACGATGGGAAGATTGGTGCCAA
CTAACCCACAGTACAAGCGGTCTTGCTGTGGGCAGCAACACTTGTCGCGG
AACGGGAAACGGTCTCGTAGGCTTGTGCTTTTCAGTGCTCAATAGCTCCA
GTACCACCACTGCCCTCGATTTCGAACGCTTTTTATCAAAACTGCCAGCA
ATTGTTTTGGACCTTTCTAGGAAACAAACTGAACTTGTTTGGCGACCCCT
CGTTTCCCGATCAACCCCCCCCCCCTAAACAGCGACGGGGCAGAGGCCAA
TGGAGACGGGGGAAAGAGCAGCACCGGCAAGAAATCAACGGGGAGCAAAT
CGAGGACGCAGGGGGAGGCTTTCAAGAGGGTCCAGGACGAGGAGTGGGTA
GGGGGGCTGAAGAAGGGGTTCGATGACAACACCTACGAGGTGAGTGTATG
TGGGCGGGCGTGACCTCGTCGTTGCTGGCATCTACTGCCTTTTTCAACGG
GCTGGCCAAGGATGTCAAGAGAGAAGAAGGTTGGTTGGTTGTTTGGTGTG
CCTGTTTTGTTGTGTTGTTGTCGTTGTCGACTGCGCTCAACGCTCAACCG
CCGGGCTGTGGTCAATCTGCCAAGATAGAGTTGACATGGTGGCACATTTT
CTTCGTGTTGAATACGTAAAATCATCCAGCCCTGCGTGGGTAATGTCGTG
CGCGCGCATTCGAGCGGGGAGCTCTCGTCCTATGTAGACGGGAAAGTGCC
AGTTTTGTCTCGTCGTCCTTGATCTTCCGTGTCGGTTTTTGCTGCGTCTC
GCCCCATCGGCACAGTCGGAGGGCGTTGAGCGACTATTTTTTCTCCCTCT
CCCTCTGCCCCTGTCCTGTTTATTTTTGTCAGGGGACATTTGGACAAGGA
GGGTACGGGTTCAAGGCTAGCGAGAAGCTGTCGAAGGTGCGAGGGAAGGA
CTTCAGGCACGAGAAGACCAAGAAGAAGCGCGGCAGCTACCGAGGGGGAG
AGATCTCGATGAACAGCTACTCGGTCAAGTTCGACGACAGCGATGGGTGA
TGTTTAGATGATGCTGAGGAACGATGGAAGATGGTGCGACGATCCGTAGA
GCCAACCATTTGCTGAAGGGGACTCTGTATCTGTATCTCTCTATCTTGTG
TCTCTGAGTCGTTCTGTGTGTACAACCGAGAGGTTACGAAAGAATTGTCC
GCCAAGCTGCAAGGAGGGCTTGTCGCAAAAGCGTTATTTACGTCCGATAG
TACGGGTCGCGTTTGCGTTTGAAGCGACGCAACAACCGGGACACAGGAGG
ACATCTTTGCTTTTCTGGCGATGGTTTTGAAAACAACCAGCGATGAGTGC
GGGTAGGGTACTGGCAAGACGCCACCACCATCCGAAGCAGCTAGCGCTTG
GTCGGTTGATGGAGGCGAGAGACAACTGGATAGGCGGAACGGCGGCATCA
CGCGTAGTCGTGCTACATAATCTGTTTGGTAGGAGTGGTTGGTGCGTTGA
GGCGCCTTGTTGATCGATTCAGTTTAGCCTAGCAAGACATGCCTTGCCGG
AGTTGTTCCACGCGAGACACGCTCGGTCCTCGCACGGAGAGAATTTCTGG
CGCTTTTTTCGTCGTGCGCTGTTGTAGCACCCCCTCGTGGTAAACCATTC
AGCTGGAGGAGGTCTCCGTCCCTGTATCTTCGGACCAGAACCACACGCTA
TGCACTTGCATGTGATGTGGTACGCCCCAAGCCTGGGTTGTGAATGAAAC
GGTCTCGACGATAGAATCCGACCCGGCCGTCGTCTGTGTTGGCGTGATAC
GCTTTGAAAGGTTGTTTGGTGACTGGGTCTTGGGAAAACGAAATACTTTT
TGAGCGCACCTTCCTGTTGCCCA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig87:761373..766445-

>mRNA_C-linearis_contig87.16322.1 ID=mRNA_C-linearis_contig87.16322.1|Name=mRNA_C-linearis_contig87.16322.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2694bp|location=Sequence derived from alignment at C-linearis_contig87:761373..766445- (Chordaria linearis ClinC8C monoicous)
ATGACAGCATCAGCAATCGAGGACATCCCGGCCAGCGCCCTGCACCCTCT
GCTCCACTCCTTCCTGCTGATGACAGCATCAGCAATCGAGGACATCCCGG
CCAGCGCCCTGCACCCTCTGCTCCACTCCTTCCTGCTGGAATGCGGACTT
TCAACCACGGCGGCAGCCCTGCGCGAGGAGACGGGCAAGAGTTCGAAAAA
GCTCGCGAAAGCCCAGGAATGCGGACTTTCAACCACGGCGGCAGCCCTGC
GCGAGGAGACGGGCAAGAGTTCGAAAAAGCTCGCGAAAGCCCAGGCATCG
CTGGGAGGGGGCTGCGAAGATCTTTTGGGGATCGTGAACCTCCACCGCAA
GCGTCTCGCGGAGGCGGCGGCAGATGCGGAGGACAGCGAGGTGCAAGAGG
ACGTGGTACACACCAAGAAGGTGAAGAAAGTCAGGGCAGCTGCAGCGGCT
GCGGCAGCGGTGGTGGCTTCTTCTTCATCATCGTCGTCCAGCAGCAGCAG
CAGCAGCAGCGAAGAAGAAGAAGAGAGCGACGAAGAGAGTGAGGAAGAAG
TCCCGGAGAAAAAGGCCGATGCAAACGGTAACAAACCCGAGGCGAACGGC
AAGAAGCCCAAGAAGGTAGCTGCGGCGGCGGCAGCAGCGGCTGAGTCTAG
CAGCGAGGACGAGAGCAGCGACGACAGCGATAGCGAGGAATCTTCGTCCG
AGGAGGAGGAAGAAAAGGAGGAGAAGCAGGAACAAAAGCGACCGAAAAAG
CGGAAGGCGGCAGAGGCGGAGTCGTCTTCTGAGGAGGAAAGCGAGAGCGA
CGACGATGACGACGACAACGACAAAACGAAGAAGCCCCCCGCTAAAAAGA
AGAAGGCATCGCTGGGAGGGGGCTGCGAAGATCTTTTGGGGATCGTGAAC
CTCCACCGCAAGCGTCTCGCGGAGGCGGCGGCAGATGCGGAGGACAGCGA
GGTGCAAGAGGACGTGGTACACACCAAGAAGGTGAAGAAAGTCAGGGCAG
CTGCAGCGGCTGCGGCAGCGGTGGTGGCTTCTTCTTCATCATCGTCGTCC
AGCAGCAGCAGCAGCAGCAGCGAAGAAGAAGAAGAGAGCGACGAAGAGAG
TGAGGAAGAAGTCCCGGAGAAAAAGGCCGATGCAAACGGTAACAAACCCG
AGGCGAACGGCAAGAAGCCCAAGAAGGTAGCTGCGGCGGCGGCAGCAGCG
GCTGAGTCTAGCAGCGAGGACGAGAGCAGCGACGACAGCGATAGCGAGGA
ATCTTCGTCCGAGGAGGAGGAAGAAAAGGAGGAGAAGCAGGAACAAAAGC
GACCGAAAAAGCGGAAGGCGGCAGAGGCGGAGTCGTCTTCTGAGGAGGAA
AGCGAGAGCGACGACGATGACGACGACAACGACAAAACGAAGAAGCCCCC
CGCTAAAAAGAAGAAGGTGGAACCTGCTGACGCTGCAGCTGCCGCCGATG
ACGAGAGTAGCAGCAGCAGCGACAGCAGCAGTGACAGCAGCAGTGACAGC
AGCAGTAGCAGTGACAGCAGCGACAGCGACGACTCTTCCTCCTCGGACGA
TGAGACGGACGAAGAACAGGTGGAACCTGCTGACGCTGCAGCTGCCGCCG
ATGACGAGAGTAGCAGCAGCAGCGACAGCAGCAGTGACAGCAGCAGTGAC
AGCAGCAGTAGCAGTGACAGCAGCGACAGCGACGACTCTTCCTCCTCGGA
CGATGAGACGGACGAAGAACAGGAGGCAGAAAGGGCGATGGTGAAAGCGT
CTGCGGAGAAGGAGAGGAGGCGATCCTCGGCGGCCGCGGCGGCGGCGTGG
GTTCCCAAGGTTCTGACGCCCCACAAAGACTCCGCTTCCAACGGCGTGGC
AAACGGTGACGGCATGAAGACACCGGTTAAGGGGAGGCAGAAAGGGCGAT
GGTGAAAGCGTCTGCGGAGAAGGAGAGGAGGCGATCCTCGGCGGCCGCGG
CGGCGGCGTGGGTTCCCAAGGTTCTGACGCCCCACAAAGACTCCGCTTCC
AACGGCGTGGCAAACGGTGACGGCATGAAGACACCGGTTAAGGGCGACGG
GGCAGAGGCCAATGGAGACGGGGGAAAGAGCAGCACCGGCAAGAAATCAA
CGGGGAGCAAATCGAGGACGCAGGGGGAGGCTTTCAAGAGGGTCCAGGAC
GAGGAGTGGGTAGGGGGGCTGAAGAAGGGGTTCGATGACAACACCTACGA
GCGACGGGGCAGAGGCCAATGGAGACGGGGGAAAGAGCAGCACCGGCAAG
AAATCAACGGGGAGCAAATCGAGGACGCAGGGGGAGGCTTTCAAGAGGGT
CCAGGACGAGGAGTGGGTAGGGGGGCTGAAGAAGGGGTTCGATGACAACA
CCTACGAGGGGACATTTGGACAAGGAGGGTACGGGTTCAAGGCTAGCGAG
AAGCTGTCGAAGGTGCGAGGGAAGGACTTCAGGCACGAGAAGACCAAGAA
GAAGCGCGGCAGCTACCGAGGGGGAGAGATCTCGATGAACAGCTACTCGG
TCAAGTTCGACGACAGCGATGGGTGAGGGACATTTGGACAAGGAGGGTAC
GGGTTCAAGGCTAGCGAGAAGCTGTCGAAGGTGCGAGGGAAGGACTTCAG
GCACGAGAAGACCAAGAAGAAGCGCGGCAGCTACCGAGGGGGAGAGATCT
CGATGAACAGCTACTCGGTCAAGTTCGACGACAGCGATGGGTGA
back to top