prot_C-linearis_contig87.16322.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16322.1
Unique Nameprot_C-linearis_contig87.16322.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length449
Homology
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 6.210e-73
Identity = 341/458 (74.45%), Postives = 351/458 (76.64%), Query Frame = 0
Query:    3 ASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQASLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKKVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANGNXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPHKDSA---SNGVANGDGMKTPVKGDGAEANGDG---------GKSSTGXXXXXXKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 448
            A+A+ED+PASALHPL+HSFLLECGLS TAAALREETGKSSKKL K QA+LGGGC+DLL IVN HRKRLA  AA A   +VQED+ HTKK      XXXX                                        ANG               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WVPK LTP+K      SNGVANGDGMKTP KG                  GK STG      KSRTQGEAFKRVQDE+WVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    7 AAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXK-------------------------------------GKANG-----------VKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGG-----KSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.520e-66
Identity = 370/525 (70.48%), Postives = 382/525 (72.76%), Query Frame = 0
Query:    3 ASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQASLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKK--------------------------------------------------------------VRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADANGNXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKVLTPHK--DSASNGVANGDGMKTPVKGDGAEANGDG---------------GKSSTGXXXXXXKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 448
            A+A++D+PASALHPL+HSFLLECGLS TAAALREETGKS+KKL K QA+LGGGC+DLL IVN HRKRLA  AA A   +VQEDV HTKKVKK                                                                AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      A A   XXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXAWVPK LTP+K     SNGVANGDGMKTP KG      G G               GK STG      KSR+QGEAFKRVQDE+WVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    7 AAAVDDLPASALHPLVHSFLLECGLSATAAALREETGKSAKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDVAHTKKVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKGKGKANGVKPKKVVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAAAKAAAKAXXXXXXXXXAESSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDADNSXXXXXXXSDSDXXXXXXXXXXXXXXXXXXXXXXXXSDGDDSXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKDLTPNKAGGGVSNGVANGDGMKTPAKG------GQGXXXXXXXXXXXXXXXGKKSTGG-----KSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 102 bits (253), Expect = 4.320e-21
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 0
Query:  365 RTQGEAFKRVQDEEWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 447
            R QGEAFKRV  + W   +K     DN+YEGTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  158 RVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.710e-21
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0
Query:  368 GEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 445
            GEAF+RV+DEEWV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  443 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.820e-21
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0
Query:  365 RTQGEAFKRVQDEEWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 444
            R  GEAF+RV DE W   +K     DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 9.080e-21
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0
Query:  366 TQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 447
            T  +AF+RV++EEW+G  KKG  DN+Y GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE)

HSP 1 Score: 97.1 bits (240), Expect = 1.040e-20
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 0
Query:  363 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 447
            K  T G+AF+RV+ EEW+G  KKG  DN YE TFGQ G+G+KA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:   31 KVGTAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 3.690e-20
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = 0
Query:  363 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 447
            K  T  +AF+RV++EEW+G  KKG  DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  205 KFGTAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 101 bits (252), Expect = 5.580e-20
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0
Query:  363 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 447
            K  +  +AF+RV+ EEW+G  KKG  DN+YEGTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  298 KGNSTFKAFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380          
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE)

HSP 1 Score: 101 bits (252), Expect = 6.470e-20
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 0
Query:  363 KSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 447
            K  T  +AF+RV+ EEW+G  KKG  DN+YEGTFGQGG+GFKA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:  310 KPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16322.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI6.210e-7374.45LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE1.520e-6670.48LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3Y1Y8_HETAK4.320e-2165.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CH62_9STRA4.710e-2170.51SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A4D9D037_9STRA8.820e-2167.90SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A061RD47_9CHLO9.080e-2164.63SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A8JCQ6_CHLRE1.040e-2061.63Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A7S1T5X8_9CHLO3.690e-2062.79Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3QVY0_DUNTE5.580e-2063.53Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A150FVM7_GONPE6.470e-2063.95SRP40_C domain-containing protein n=1 Tax=Gonium p... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 10..42
e-value: 0.0028
score: 26.9
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 10..42
score: 9.295
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 371..443
e-value: 4.4E-25
score: 88.3
IPR039191Srp40/Nopp140PANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 177..446
coord: 11..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:762196..766260 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16322.1mRNA_C-linearis_contig87.16322.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 761373..766445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16322.1 ID=prot_C-linearis_contig87.16322.1|Name=mRNA_C-linearis_contig87.16322.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=449bp
MTASAIEDIPASALHPLLHSFLLECGLSTTAAALREETGKSSKKLAKAQA
SLGGGCEDLLGIVNLHRKRLAEAAADAEDSEVQEDVVHTKKVKKVRAAAA
AAAAVVASSSSSSSSSSSSSSEEEEESDEESEEEVPEKKADANGNKPEAN
GKKPKKVAAAAAAAAESSSEDESSDDSDSEESSSEEEEEKEEKQEQKRPK
KRKAAEAESSSEEESESDDDDDDNDKTKKPPAKKKKVEPADAAAAADDES
SSSSDSSSDSSSDSSSSSDSSDSDDSSSSDDETDEEQEAERAMVKASAEK
ERRRSSAAAAAAWVPKVLTPHKDSASNGVANGDGMKTPVKGDGAEANGDG
GKSSTGKKSTGSKSRTQGEAFKRVQDEEWVGGLKKGFDDNTYEGTFGQGG
YGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH
IPR007718Srp40_C
IPR039191Srp40/Nopp140