mRNA_C-linearis_contig87.16281.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 115 bits (288), Expect = 3.390e-27 Identity = 62/136 (45.59%), Postives = 91/136 (66.91%), Query Frame = 2
Query: 2 QSPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDISD----GDLRVSYEEGLIDMAFDPGWSGN---SFFYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
Q+PDGS +W++G+ G++ V +++M V+D+S G V YEEGL+D+AF P +S + ++FY+S+TVDL + + + NR++RFTY GD T+ SE +LLTT PK + IHSAGW+GFKPS YG
Sbjct: 182 QTPDGSQWWLLGIAGEIYAVDSDNMDDSELVIDVSGSVTGGTFYVDYEEGLLDVAFGPMFSESGYPNYFYVSYTVDL-----NDDLMQRNRLARFTYIPGDPEGTKASEEVLLTTVPKYNSIHSAGWLGFKPSVYG 312
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 115 bits (287), Expect = 4.880e-27 Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 2
Query: 2 QSPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDISD-----GDLRVSYEEGLIDMAFDPGWSGNSF---FYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
Q+PDGS +W++G+ GQ+ V ++ M V+D+S G+ +EEGL+D+AF P + NS+ FY+S+TV L GE + NR+++FTY D VATR SE +LLTT PK + IHSAGW+GFKPSDYG
Sbjct: 135 QTPDGSQWWLLGISGQIYAVDSDSMDESELVIDVSGPVPSGGNFYDDFEEGLLDVAFGPMFGDNSYPQYFYVSYTVLL----DDGE-MQRNRLAKFTYFPEDPVATRASEEVLLTTVPKYNSIHSAGWLGFKPSDYG 266
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 110 bits (274), Expect = 9.050e-26 Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 2
Query: 2 QSPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDI-----SDGDLRVSYEEGLIDMAFDPGWSGNSF---FYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
Q+PDGS +W++G+ GQ+ V ++ M V+ + S G V +EEGL+D+AF P + NS+ FY+S+TV L GE NR++RFTY GD ATR SE +LLTT P+ +H+AGW+GFKPS YG
Sbjct: 109 QTPDGSQWWLLGISGQIYAVNSDSMDESELVIHVAGPVPSGGSFYVDFEEGLLDVAFGPMFGDNSYPQYFYVSYTVLL----DDGENQ-RNRLARFTYVPGDAAATRASEEVLLTTVPRFISVHAAGWLGFKPSAYG 240
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.140e-21 Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 2
Query: 47 QVKGVQANDMGVIFDVV-DISDGDLRVSYEEGLIDMAFDPGWSGN---SFFYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
QV +D ++ DV ++DG V YEEGL+D+AF P +S + ++FY+S+TVDL + GE + NR++RFTY GD T+ SE +LLT+ PKS+ IHSAGW+GFKPS YG
Sbjct: 137 QVDSDNMDDSSLVIDVSGSVTDGTFYVDYEEGLLDVAFGPMFSESDYPNYFYVSYTVDL----NDGE-VQRNRLARFTYIPGDPAGTKASEEVLLTSAPKSTSIHSAGWLGFKPSVYG 249
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 7.800e-21 Identity = 55/128 (42.97%), Postives = 75/128 (58.59%), Query Frame = 2
Query: 5 SPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDISDGDLRVSYEEGLIDMAFDPGWSGNSFFYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
+PDGS +WI+GL+GQ+ V D V+D+S L ++EEGL+ MAF P + FY S+ +G + G NR+SRF Y T SE IL+T++ K S +HSAGW+GFKPS YG
Sbjct: 94 TPDGSKWWILGLKGQIVEVDVADATWAKTVLDMSSLVLW-TFEEGLLSMAFSPAFHTTGVFYASYV--------NGPSFGTNRLSRFKYDPDSAANTLASEEILITSSEKKSNVHSAGWIGFKPSSYG 212
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.380e-20 Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 2
Query: 14 GSMYWIVGLEGQVKGVQANDMGVIFDVVDI-----SDGDLRVSYEEGLIDMAFDPGWSGNSF---FYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
G + +V L G ++ V + M V+D+ S G +EEGL+D+AF P + NS+ FY+S+TV L GE NR++RFTY GD ATR SE +LLTT PK + +HSAGW+GFKPS YG
Sbjct: 40 GGLILVVPLRGSMRQVNLDSMDESELVIDVAGPVPSGGSFYGDFEEGLLDVAFGPMFGDNSYPQYFYVSYTVLL----DDGENQ-RNRLARFTYVPGDAAATRASEEVLLTTVPKYNSVHSAGWLGFKPSAYG 167
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.380e-19 Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 2
Query: 5 SPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDISDGDLRVSYEEGLIDMAFDPGWSGNSFFYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
+PDGS +WI+GL+GQ+ V D V+D+S L ++EEGL+ MAF P + FY S+ +G + G NR+SRF Y T SE +L+ ++ K S +HSAGW+GFKPS YG
Sbjct: 181 TPDGSKWWILGLKGQIVEVDVADPTSAKTVLDMSSLILW-TFEEGLLSMAFSPAFHTTGVFYASYV--------NGPSFGTNRLSRFKYDPNSAENTLGSEEVLIISSEKQSNVHSAGWIGFKPSSYG 299
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 5.960e-19 Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 2
Query: 2 QSPDGSMYWIVGLEGQVKGVQANDMGVIFDVVDISDGDLRVSYEEGLIDMAFDPGWSGNSF---FYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
Q+PDGS +W++G+ GQ+ GL+D+AF P + +S+ FY+S+TV L GE NR++RFTY GD VATR +E +LLTT PK + +HSAGW+GFKPS YG
Sbjct: 187 QTPDGSQWWLLGISGQIYA--------------------------GLLDLAFGPMFGDDSYPQYFYVSYTVLL----DDGENQ-RNRLARFTYVPGDPVATRATEEVLLTTVPKYNSVHSAGWLGFKPSVYG 287
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.900e-18 Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 2
Query: 104 SDGDLRVSYEEGLIDMAFDPGWSGNSF---FYLSHTVDLGATGSSGETLGNNRISRFTYSAGDTVATRISELILLTTTPKSSFIHSAGWVGFKPSDYG 388
S G+ +EEGL+D+ F P +S S+ FY+S+TV L GE + NR++RFTY GD VATR +E +LLTT PK + IHSAGW+GFKPSDYG
Sbjct: 114 SGGNFYDDFEEGLLDVVFGPMFSVPSYPSYFYVSYTVLL----DDGE-MQRNRLARFTYVPGDPVATRATEEVLLTTVPKYNSIHSAGWLGFKPSDYG 206
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Match: A0A419GUD8_9ACTN (Glucose dehydrogenase n=1 Tax=Gaiellales bacterium TaxID=2093372 RepID=A0A419GUD8_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 1.430e-5 Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 2
Query: 29 IVGLEGQVKGVQANDMGVIFDVVDISDGDLRVSYEEGLIDMAFDPGWSGNSFFYLSHTVD-LGATGSSGETLGNNRISRFTYSAGD---TVATRISELILLTTTPKSSFIHSAGWVGFKPSDY 385
+V G +K + + ++DISD + E+GLI +AFDPG++GN +FY+++T GAT RISRFT SAG A SE ++L P+ H+ G + F P Y
Sbjct: 81 VVEQAGVIKVFEDREGAEALVLLDISDR-VESGGEQGLIGLAFDPGFAGNGYFYVNYTASPSGAT----------RISRFTTSAGPGGALAADAGSEEVMLEQ-PQPYSNHNGGMLAFGPDGY 191 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig87.16281.1 >prot_C-linearis_contig87.16281.1 ID=prot_C-linearis_contig87.16281.1|Name=mRNA_C-linearis_contig87.16281.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp MYWIVGLEGQVKGVQANDMGVIFDVVDISDGDLRVSYEEGLIDMAFDPGWback to top mRNA from alignment at C-linearis_contig87:135204..137146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig87.16281.1 ID=mRNA_C-linearis_contig87.16281.1|Name=mRNA_C-linearis_contig87.16281.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1943bp|location=Sequence derived from alignment at C-linearis_contig87:135204..137146- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig87:135204..137146- >mRNA_C-linearis_contig87.16281.1 ID=mRNA_C-linearis_contig87.16281.1|Name=mRNA_C-linearis_contig87.16281.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig87:135204..137146- (Chordaria linearis ClinC8C monoicous)back to top |